Dataset: Pigments and Nutrients
Deployment: NBP0606

Pigments and Nutrients

Principal Investigator:

B. Gregory Mitchell (University of California-San Diego Scripps, UCSD-SIO)

BCO-DMO Data Manager:

Stephen R. Gegg (Woods Hole Oceanographic Institution, WHOI BCO-DMO)

Project:

Blue Water Zone (BWZ)

Current State:

Final no updates expected

Version:

10 May 2011

Deployment Synonyms:

R/V Palmer, NBP, (July 2006)

Version Date:

2011-05-10

Data URL:

https://www.bco-dmo.org/dataset-deployment/454581/data

Expand/Collapse All

Description

Concentration of pigments in phytoplankton, Particulate organic matter concentration, Macronutrients

One component of a Biological dataset collected from Southern Drake Passage and Scotia Sea

Ocean biology data were collected in Southern Drake Passage and Scotia Sea during two research cruises supported by NSF awards. These two cruises, namely LMG0402 and NBP0606, were conducted during Feb. to March 2004 and Jul. to Aug 2006, respectively. Dataset includes concentration of pigments in phytoplankton, particulate organic matter concentration, macronutrients, primary productivity and microbial biomass and productivity

As part of the data collection from the collaborative research, this dataset was for the study of plankton community structure and their response to the distribution and natural variability of dissolved iron in Southern Drake Passage and Scotia Sea

Methods & Sampling

Dataset acquisition description

Notes:

1. HPLC pigments samples were analyzed by CHORS/SDSU for LMG0402 and by HPL for NBP0606, respectively

2. Pigments not found by CHORS were given a concentration of 0; pigments not found by HPL were given a concentration of 0.0001

Data Processing Description

Dataset Processing Description

More information about this dataset deployment

Funding

Award Number	Funding Source
ANT-0444134	NSF Antarctic Sciences

Instruments

CHN Elemental Analyzer

Supplied Description:

Instrument Type

Generic Name: CHN Elemental Analyzer

Acronym: CHN_EA

Generic Description:

A CHN Elemental Analyzer is used for the determination of carbon, hydrogen, and nitrogen content in organic and other types of materials, including solids, liquids, volatile, and viscous samples.

Fluorometer

Supplied Description:

Instrument Type

Generic Name: Fluorometer

Community Identifier: http://vocab.nerc.ac.uk/collection/L05/current/113/

Generic Description:

A fluorometer or fluorimeter is a device used to measure parameters of fluorescence: its intensity and wavelength distribution of emission spectrum after excitation by a certain spectrum of light. The instrument is designed to measure the amount of stimulated electromagnetic radiation produced by pulses of electromagnetic radiation emitted into a water sample or in situ.

Liquid Scintillation Counter

Supplied Description:

Instrument Type

Generic Name: Liquid Scintillation Counter

Acronym: LSC

Community Identifier: http://vocab.nerc.ac.uk/collection/L05/current/LAB21/

Generic Description:

Liquid scintillation counting is an analytical technique which is defined by the incorporation of the radiolabeled analyte into uniform distribution with a liquid chemical medium capable of converting the kinetic energy of nuclear emissions into light energy. Although the liquid scintillation counter is a sophisticated laboratory counting system used the quantify the activity of particulate emitting (ß and a) radioactive samples, it can also detect the auger electrons emitted from 51Cr and 125I samples.

Liquid scintillation counters are instruments assaying alpha and beta radiation by quantitative detection of visible light produced by the passage of rays or particles through a suitable scintillant incorporated into the sample.

Nutrient Autoanalyzer

Supplied Description:

Instrument Type

Generic Name: Nutrient Autoanalyzer

Community Identifier: http://vocab.nerc.ac.uk/collection/L05/current/LAB04/

Generic Description:

Nutrient Autoanalyzer is a generic term used when specific type, make and model were not specified. In general, a Nutrient Autoanalyzer is an automated flow-thru system for doing nutrient analysis (nitrate, ammonium, orthophosphate, and silicate) on seawater samples.

Parameters

Supplied Name	Supplied description	Supplied Units	Standard Name
cruise_id	Cruise name	text	cruise_id
cast_id	identification of CTD/TMC cast	text	cast
date	Date (GMT)	YYYYMMDD	date
time	Time (GMT)	HHMM	time
lat	Station latitude (South is negative)	decimal degrees	lat
lon	Station longitude (West is negative)	decimal degrees	lon
Rosette_Bottle_ID	Rosette bottle number	integer	bottle
depth	Depth where sample taken	meters	depth
Chlorophyll_a_Fluor	Chlorophyll a by fluorometric analysis; Pigments_Fluor	mg m-3	no_bcodmo_term
Nitrate	Nitrate; Macro-nutrients	umol/l	no_bcodmo_term
Nitrite	Nitrite; Macro-nutrients	umol/l	no_bcodmo_term
Ammonium	Ammonium; Macro-nutrients	umol/l	no_bcodmo_term
Phosphate	Phosphate; Macro-nutrients	umol/l	no_bcodmo_term
Silicate	Silicate; Macro-nutrients	umol/l	Silicate
Chlorophyll_c3	Chlorophyll c3; Pigments_HPLC	mg m-3	no_bcodmo_term
Chlorophyll_c2	Chlorophyll c2; Pigments_HPLC	mg m-3	no_bcodmo_term
Chlorophyll_c1	Chlorophyll c1; Pigments_HPLC	mg m-3	no_bcodmo_term
Chlorophyllide_a	Chlorophyllide a; Pigments_HPLC	mg m-3	no_bcodmo_term
Pheophorbide_a	Pheophorbide a; Pigments_HPLC	mg m-3	no_bcodmo_term
Peridinin	Peridinin; Pigments_HPLC	mg m-3	peridinin
Butanoyloxyfucoxanthin	Butanoyloxyfucoxanthin; Pigments_HPLC	mg m-3	no_bcodmo_term
Fucoxanthin	Fucoxanthin; Pigments_HPLC	mg m-3	no_bcodmo_term
Neoxanthin	Neoxanthin; Pigments_HPLC	mg m-3	no_bcodmo_term
Prasinoxanthin	Prasinoxanthin; Pigments_HPLC	mg m-3	no_bcodmo_term
Violaxanthin	Violaxanthin; Pigments_HPLC	mg m-3	no_bcodmo_term
Hexanoyloxyfucoxanthin	Hexanoyloxyfucoxanthin; Pigments_HPLC	mg m-3	no_bcodmo_term
Diadinoxanthin	Diadinoxanthin; Pigments_HPLC	mg m-3	no_bcodmo_term
Alloxanthin	Alloxanthin; Pigments_HPLC	mg m-3	no_bcodmo_term
Diatoxanthin	Diatoxanthin; Pigments_HPLC	mg m-3	no_bcodmo_term
Zeaxanthin	Zeaxanthin; Pigments_HPLC	mg m-3	no_bcodmo_term
Lutein	Lutein; Pigments_HPLC	mg m-3	lutein
Gyroxanthin_diester	Gyroxanthin diester; Pigments_HPLC	mg m-3	no_bcodmo_term
Chlorophyll_b	Chlorophyll b; Pigments_HPLC; CHORS did not report this pigment	mg m-3	no_bcodmo_term
Divinyl_Chlorophyll_b	Divinyl Chlorophyll b; Pigments_HPLC; HPL included this pigments into Chlorophyll b	mg m-3	no_bcodmo_term
Monovinyl_Chlorophyll_b	Monovinyl Chlorophyll b; Pigments_HPLC; HPL did not report this pigment	mg m-3	no_bcodmo_term
Chlorophyll_a_Allomer	Chlorophyll a Allomer; Pigments_HPLC; HPL did not report this pigment	mg m-3	no_bcodmo_term
Divinyl_Chlorophyll_a	Divinyl Chlorophyll a; Pigments_HPLC	mg m-3	no_bcodmo_term
Monovinyl_Chlorophyll_a	Monovinyl Chlorophyll a; Pigments_HPLC	mg m-3	no_bcodmo_term
Chlorophyll_a_epimer	Chlorophyll a epimer; Pigments_HPLC; HPL did not report this pigment	mg m-3	no_bcodmo_term
Pheophytin	Pheophytin; Pigments_HPLC	mg m-3	no_bcodmo_term
alpha_Carotene	alpha-Carotene; Pigments_HPLC; HPL did not report this pigment	mg m-3	no_bcodmo_term
beta_Carotene	beta-Carotene; Pigments_HPLC; HPL did not report this pigment	mg m-3	no_bcodmo_term
alpha_beta_Carotene	the sum of alpha and beta carotene; Pigments_HPLC	mg m-3	no_bcodmo_term
Total_Chlorophyll_a	Total Chlorophyll a; Pigments_HPLC	mg m-3	no_bcodmo_term
POC	Particulate organic carbon; CHN	mg m-3	POC
PON	Particulate organic nitrogen; CHN	mg m-3	PON

Database

Contribute Data

Dataset: Pigments and Nutrients
Deployment: NBP0606

Dataset acquisition description

Dataset Processing Description

Database

Contribute Data

Dataset: Pigments and NutrientsDeployment: NBP0606

Dataset acquisition description

Dataset Processing Description

Dataset: Pigments and Nutrients
Deployment: NBP0606