Dataset: P_globosa_growth
Deployment: lab_Kustka_Allen

P.globosa growth under varied Fe, Zn, Mn, Cu availability.

Principal Investigator:

Andrew E. Allen (J. Craig Venter Institute, JCVI)

Contact:

Adam Kustka (Rutgers University)

BCO-DMO Data Manager:

Shannon Rauch (Woods Hole Oceanographic Institution, WHOI BCO-DMO)

Project:

Expression profiling and functional genomics of a pennate diatom: Mechanisms of iron acquisition, stress acclimation, and recovery (Pennate Diatom Genomics)

Current State:

Final no updates expected

Version:

28 June 2012

Version Date:

2012-06-28

Data URL:

https://www.bco-dmo.org/dataset-deployment/455317/data

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Description

Results of metal limitation experiments (Cu, Zn, Fe, Mn) conducted in the prymensiophyte Phaeocystis globosa (one species of a fairly cosmopolitan and globally significant genus with local abundances often inversely correlated with diatom abundance).

Methods & Sampling

Dataset acquisition description

Data Processing Description

Dataset Processing Description

PI-submitted parameter names have been modified to conform with BCO-DMO conventions.

More information about this dataset deployment

Funding

Award Number	Funding Source
OCE-0727997	NSF Division of Ocean Sciences

Instruments

None available yet

Parameters

Supplied Name	Supplied description	Supplied Units	Standard Name
condition	Condition under which the experiment was carried out.	dimensionless	no_bcodmo_term
growth_rate_mean	Mean of growth_rate of the 3 replicates under each condition.	ln(cell density)/day	no_bcodmo_term
growth_rate_mean_sd	Standard deviation of growth_rate_mean.	dimensionless	no_bcodmo_term
p_fe_prime	The negative log of fe_prime concentration (which is the summed concentration of all Fe species not complexed to EDTA). The additional effect of photochemistry of FeEDTA complexes on calculating fe_prime_log was considered. Originally notated as pFe'.	dimensionless	no_bcodmo_term
p_cu_prime	The negative log of Cu prime concentration (which is the summed concentration of all Cu species not complexed to either EDTA or TETA). Originally notated as pCu'.	dimensionless	no_bcodmo_term
p_mn_prime	The negative log of the Mn prime concentration (which is the summed concentration of all Mn species not complexed to EDTA). Originally notated as pMn'.	dimensionless	no_bcodmo_term
p_zn_prime	The negative log of the Zn prime concentration (which is the summed concentration of all Zn species not complexed to EDTA). Originally notated as pZn'.	dimensionless	no_bcodmo_term
replicate	Replicate number; chemical conditions for replicates are nominally the same.	dimensionless	replicate
growth_rate	Cell specific growth rate (per day), calculated as the slope of the linear regression between ln (cell density) versus time.	ln(cell density)/day	no_bcodmo_term

Database

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Dataset: P_globosa_growth
Deployment: lab_Kustka_Allen

Dataset acquisition description

Dataset Processing Description

Database

Contribute Data

Dataset: P_globosa_growthDeployment: lab_Kustka_Allen

Dataset acquisition description

Dataset Processing Description

Dataset: P_globosa_growth
Deployment: lab_Kustka_Allen