Dataset: alongtrack
Deployment: KN207-03

Data collected along the ship's track during cruise KN207-03 (NA-VICE).

Chief Scientist:

Kay D. Bidle (Rutgers University, Rutgers IMCS)

BCO-DMO Data Manager:

Shannon Rauch (Woods Hole Oceanographic Institution, WHOI BCO-DMO)

Project:

Lipid lubrication of oceanic carbon and sulfur biogeochemistry via a host-virus chemical arms race (NA-VICE)

Current State:

Final no updates expected

Version:

05 Oct 2012

Deployment Synonyms:

NA-VICE

Version Date:

2012-10-05

Data URL:

https://www.bco-dmo.org/dataset-deployment/455468/data

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Description

This alongtrack data was recorded by the R/V Knorr's data logging system, Calliope, during the KN207-03 cruise from 06/15/12 to 07/14/12. The data are preliminary; no QC has been done.

Methods & Sampling

Dataset acquisition description

A .csv file was generated for each day of the cruise.

Known data acquisition problems:
On both 22 June 2012 from 11:20am (UTC) through 12:34pm (UTC) and on 01 July 2012 from 09:36am (UTC) through 11:13pm (UTC): Underway Fluorometer and SBE45 sensors were flushed with fresh water and Fluorometer cell cleaned as data showed 'greens growing' behavior, ie fluorometer data steadily rising. Data columns affected are: flr, sal_ss_SBE, temp_ss5_2, sal_ss, cond_mS. Data from these items should be considered faulty from 11:20am UTC until 12:35pm UTC on 22 June 2012 and from 09:36am UTC until 11:14pm UTC on 01 July 2012, while waterflow was secured to these instruments for cleaning.

Data Processing Description

Dataset Processing Description

BCO-DMO retrieved the .csv files from the WHOI's Data Library and Archives (DLA) and the following edits were made:
- Blank values were replaced with 'nd' to indicate 'no data';
- Parameter names were changed to conform to BCO-DMO conventions;
- time_gmt was converted from HH:MM:SS format to HHMM.mm (hours, minutes, decimal minutes);
- temp_ss5_2 values for 01 July 2012 from 1136.37 to 1211.37 (time_gmt) were corrupt, containing undecipherable symbols. Those have been replaced with 'nd';
- The following parameters were removed from display:
   Depth35 (3.5 kHz depth) - all values were 0 or nd.
   HdChkSum61 - no data; column used for QC only.
   SBE45C - duplication of cond_mS; both are sea surface conductivity from the primary source (SBE45).
   SBE48T - duplication of temp_ss; both are sea surface temp from the primary sensor (SBE48).
   WXTS_Ta (air temp starboard) - values are identical to temp_air.
   WXTS_Pa (press_bar starboard) - values are identical to press_bar.
   WXTP_Ua (humidity port) - values are identical to humidity.

More information about this dataset deployment

Funding

Award Number	Funding Source
OCE-1061883	NSF Division of Ocean Sciences

Instruments

Fluorometer

Supplied Description:

Wetlabs Wet-Star fluorometer located in the Hydro Lab clean seawater piping. A MetraByte A/D converter is used to convert the 0 - 5 volt dc fluorometer output to serial (count) data. Output: 0 - 5 VDC; 0 - 4095 counts.

Instrument Type

Generic Name: Fluorometer

Community Identifier: http://vocab.nerc.ac.uk/collection/L05/current/113/

Generic Description:

A fluorometer or fluorimeter is a device used to measure parameters of fluorescence: its intensity and wavelength distribution of emission spectrum after excitation by a certain spectrum of light. The instrument is designed to measure the amount of stimulated electromagnetic radiation produced by pulses of electromagnetic radiation emitted into a water sample or in situ.

Global Positioning System Receiver

Supplied Description:

Simrad MX512 GPS receiver.

Instrument Type

Generic Name: Global Positioning System Receiver

Acronym: GPS

Community Identifier: http://vocab.nerc.ac.uk/collection/L05/current/POS03/

Generic Description:

The Global Positioning System (GPS) is a U.S. space-based radionavigation system that provides reliable positioning, navigation, and timing services to civilian users on a continuous worldwide basis. The U.S. Air Force develops, maintains, and operates the space and control segments of the NAVSTAR GPS transmitter system. Ships use a variety of receivers (e.g. Trimble and Ashtech) to interpret the GPS signal and determine accurate latitude and longitude.

Improved Meteorological Recorder

Supplied Description:

humidity, air_temp, press_bar, true wind speed (wind_speed_c), and true wind direction (wind_dir_c) are obtained from the IMET sensors, mounted on the forward mast 15.5 meters about the waterline.

Instrument Type

Generic Name: Improved Meteorological Recorder

Acronym: IMET

Community Identifier: http://vocab.nerc.ac.uk/collection/L05/current/102/

Generic Description:

An IMET Recorder is an instrument package that can be mounted on a ship or buoy to record mean weather data including air and sea-surface temperature, incoming short and long-wave radiation, precipitation, humidity, wind velocity and barometric pressure. Each sensor in the system communicates digitally and returns calibrated values to a central data recorder.

Knudsen 320 BR deepwater echosounder

Supplied Description:

Knudsen 320B/R with digital data logging and EPC graphic recorder. Array of twelve 3.5 kHz transducers located 5 meters below the surface.

Instrument Type

Generic Name: Knudsen 320 BR deepwater echosounder

Acronym: Knudsen 320

Community Identifier: http://vocab.nerc.ac.uk/collection/L05/current/156/

Generic Description:

The Knudsen 320 B/R deepwater echosounder is a digital data logging system used to measure water depth (e.g. depth of the seafloor). The system is configured to work with different frequency transducers. For example, the Edo 323 B is a 12 kHz High Frequency (HF) transducer or it can be configured to work with an array of 3.5 kHz Low Frequency (LF) transducers mounted in the hull of a vessel.

MicroTSG Thermosalinograph

Supplied Description:

The SBE45 Thermosalinograph is mounted in the main lab and connected to the clean seawater system. The intake for the system in in the bow dome ~5 meters below water level. More information on this instrument is available on its spec sheet.

Instrument Type

Generic Name: MicroTSG Thermosalinograph

Acronym: MicroTSG

Community Identifier: http://vocab.nerc.ac.uk/collection/L05/current/133/

Generic Description:

An externally powered, high-accuracy instrument, designed for shipboard determination of sea surface (pumped-water) conductivity and temperature. Salinity and sound velocity can also be computed.

Photosynthetically Available Radiation Sensor

Supplied Description:

Surface irradiance (or surface PAR) measured by Biospherical Instruments Inc. Model QSR-2240A.

Instrument Type

Generic Name: Photosynthetically Available Radiation Sensor

Acronym: PAR sensor

Community Identifier: http://vocab.nerc.ac.uk/collection/L05/current/122/

Generic Description:

A PAR sensor measures photosynthetically available (or active) radiation. The sensor measures photon flux density (photons per second per square meter) within the visible wavelength range (typically 400 to 700 nanometers). PAR gives an indication of the total energy available to plants for photosynthesis. This instrument name is used when specific type, make and model are not known.

Sea-Bird SBE 48 Hull Temperature Sensor

Supplied Name: SBE 48 Hull Temperature Sensor

Supplied Description:

Hull Temperature Sensor; magnetically coupled SBE48 to measure sea surface temperature through the hull. Sensor is located in the bow chamber outboard of the UCSW pump, a few feet aft of the UCSW intake. Sensor housing is contained in an insulation jacket to limit the effect of ambient bow chamber air.

Instrument Type

Generic Name: Sea-Bird SBE 48 Hull Temperature Sensor

Acronym: SBE 48

Community Identifier: http://vocab.nerc.ac.uk/collection/L05/current/134/

Generic Description:

The SBE 48 is a high-accuracy temperature recorder with non-volatile memory, designed for shipboard determination of sea surface temperature. Installed with magnets just below the water line, the SBE 48's temperature sensor is in contact with the inside of the ship's hull. For more information, see the SBE48 Manual.

Speedlog

Supplied Description:

Model: Furuno DS-50 Doppler. The DS50 measures and displays the ship's over-the-ground or through-the-water speed based on the Doppler effect.

Instrument Type

Generic Name: Speedlog

Generic Description:

Measures Doppler near surface vessel speed through the water.

Weather Transmitter

Supplied Description:

Vaisala WXT520 MET sensors mounted on both port and starborad side of the forward mast 15.5 meters above the water line.

Instrument Type

Generic Name: Weather Transmitter

Acronym: WXT520

Community Identifier: http://vocab.nerc.ac.uk/collection/L05/current/102/

Generic Description:

The ship-mounted Vaisala Weather Transmitter WXT520 measures: Wind speed and direction; Liquid precipitation: rainfall, duration, intensity; Barometric pressure; Air temperature and Relative humidity. (for more information see http://www.vaisala.com/en/products/multiweathersensors/Pages/WXT520.aspx)

Parameters

Supplied Name	Supplied description	Supplied Units	Standard Name
day_gmt	2-digit day of month (GMT).	dd (01 to 31)	day_gmt
month_gmt	2-digit month of year (GMT).	mm (01 to 12)	month_gmt
year_gmt	4-digit year (GMT).	YYYY	year
time_gmt	Time in GMT format; 24-hour clock.	HHMM.mm	time_gmt
date	Date (GMT).	YYYY/mm/dd	date
lat	Latitude; negative = South.	decimal degrees	lat
lon	Longitude; negative = West.	decimal degrees	lon
cond_mS	Sea surface conductivity from the primary source (SBE45). Originally named 'SSCND'.	mS/cm	cond_mS
temp_ss5	Sea surface temperature from primary sensor (SBE48) located in the bow chamber 5 meters below water level. Originally named 'SSTMP'.	degrees Celsius	temp_ss5
sal_ss	Sea surface salinity calculated from the temperature and conductivity values measured by the SBE45 (temp_ss5_2 and cond_mS). Calculations made in accordance with UNESCO 44. Originally named 'Salinity'.	PSU	sal_ss
sal_ss_SBE	Surface salinity from SBE45 located in main lab. This value is provided by the instrument rather than being calculated from the temperature and conductivity values. (For calculated salinity see sal_ss.) Originally named 'SBE45S'.	PSU	sal_ss
depth_w_12	12 kHz depth from sea surface obtained from Knudsen bathymetry system. Originally named 'Depth12'.	meters	depth_w
temp_air	Air temperature. Originally named 'AT'.	degrees Celsius	temp_air
press_bar	Primary barometric pressure reading; corrected for 15.5 meter mast height (0.1185 millibars/m). Originally named 'BPR'.	millibars	press_bar
humidity	Relative humidity (%) from best source. Sensor is mounted on the forward mast (15.5 meters above waterline). Originally named 'HRH'.	%	humidity
flr	Fluorescence measured by WetLabs Wet-Star fluorometer located in the Hydro Lab clean seawater piping. Measured in volts dc converted to MetraByte serial (count) data. 1 volt dc = +0100.00 counts.	counts	flr
SPAR	Surface irradiance (or surface PAR) measured by QSR-2240A sensor. Surface irradiance values were calculated by dividing the net voltage reading by the calibration scale factor of 6.0452 V/(uE/cm^2/sec).	uE/cm^2/sec	SPAR
precip_port	Rain accumulation obtained from the Vaisala WXT520 mounted on the forward mast port-side (15.5 m above waterline). The accumulation value is reset only when the sensor power is reset. Originally named 'WXTP_Rc'.	millimeters	precip_level
precip_stbd	Rain accumulation obtained from the Vaisala WXT520 mounted on the forward mast stbd-side (15.5 m above waterline). The accumulation value is reset only when the sensor power is reset. Originally named 'WXTS_Rc'.	millimeters	precip_level
precip_rate_port	Rain intensity obtained from the Vaisala WXT520 mounted on the forward mast port-side (15.5 m above waterline). Calculated over 10 second intervals. Originally named 'WXTP_Ri'.	mm	precip_rate
precip_rate_stbd	Rain intensity obtained from the Vaisala WXT520 mounted on the forward mast stbd-side (15.5 m above waterline). Calculated over 10 second intervals. Originally named 'WXTS_Ri'.	mm	precip_rate
wind_dir_r_port	Relative wind direction from port-side Vaisala WXT520. Data has not been corrected for sensor mounting alignment error. A 0-degree wind comes over the bow; 90-degree wind comes over the stbd side. Originally named 'WXTP_Dm'.	degrees	wind_dir_r
wind_dir_r_stbd	Relative wind direction from stbd-side Vaisala WXT520. Data has not been corrected for sensor mounting alignment error. A 0-degree wind comes over the bow; 90-degree wind comes over the stbd side. Originally named 'WXTS_Dm'.	degrees	wind_dir_r
wind_dir_c_port	True port-side wind direction. Calculated from the Vaisala WXT520. Raw data corrected for sensor alignment error and combined with gyro heading and sog and cog values. Originally named 'WXTP_TD'.	degrees	wind_dir_c
wind_dir_c_stbd	True stbd-side wind direction. Calculated from the Vaisala WXT520. Raw data corrected for sensor alignment error and combined with gyro heading and sog and cog values. Originally named 'WXTS_TD'.	degrees	wind_dir_c
wind_dir_c	True wind direction from the primary sensor (IMET). Calculations use heading and sog and cog data values. Originally named 'Wnd_TD'.	degrees	wind_dir_c
wind_speed_r_port	Relative port-side wind speed from the Vaisala WXT520. Wind sampling done at 2 Hz and averaged over 10 seconds. Originally named 'WXTP_Sm'.	meters/second	wind_speed_r
wind_speed_r_stbd	Relative stbd-side wind speed obtained from Vaisala WXT520. Wind sampling done at 2 Hz and averaged over 10 seconds. Originally named 'WXTS_Sm'.	meters/second	wind_speed_r
wind_speed_c_port	True port-side wind speed. Values calculated from the Vaisala WXT520. Raw data corrected for sensor alignment error and combined with the ship's heading and sog and cog values. Originally named 'WXTP_TS'.	meters/second	wind_speed_c
wind_speed_c_stbd	True stbd-side wind speed. Values calculated from the Vaisala WXT520. Raw data corrected for sensor alignment error and combined with the ship's heading and sog and cog values. Originally named 'WXTS_TS'.	meters/second	wind_speed_c
wind_speed_c	True wind speed from primary wind sensor (IMET). Calculations use heading and sog and cog values. Originally named 'Wnd_TS'.	meters/second	wind_speed_c
sound_vel	Sea surface sound velocity calculated from salinity and temp values (sal_ss and temp_ss5). Originally named 'SSV'.	meters/second	sound_vel
temp_ss5_2	Sea surface temperature measured by SBE45 sensor located in main lab plumbed into the uncontaminated salt water system. Intake located 5 meters below water level. Originally named 'SBE45T'.	degrees Celsius	temp_ss5
temp_air_port	Air temperature obtained from the Vaisala WXT520 sensor mounted on forward mast port-side (15.5 m above waterline). Originally named 'WXTP_Ta'.	degrees Celsius	temp_air
press_bar_port	Barometric pressure obtained from Vaisala WXT520. Data has been corrected for 15.5 meter mast height (0.1185 millibars per meter). Originally named 'WXTP_Pa'.	millibars	press_bar
humidity_stbd	Relative humidity (%) obtained from Vaisala WXT520 mounted on forward mast stbd-side (15.5 m above waterline). Originally named 'WXTS_Ua'.	%	humidity
sog	Primary speed-over-ground obtained from the GPS.	knots	sog
cog	Primary course-over-ground (true) obtained from the GPS.	degrees	cog
speedlog	Ship's speed through the water from the Furuno Speedlog. Originally named 'SPD'.	knots	speed_f_w
head	The ship's primary heading data. Originally named 'HDT'.	degrees true	heading
ISO_DateTime_UTC	Date and time (UTC) formatted to ISO8601 standard.	YYYY-mm-ddTHH:MM:SS.ss	ISO_DateTime_UTC

Database

Contribute Data

Dataset: alongtrack
Deployment: KN207-03

Dataset acquisition description

Dataset Processing Description

Database

Contribute Data

Dataset: alongtrackDeployment: KN207-03

Dataset acquisition description

Dataset Processing Description

Dataset: alongtrack
Deployment: KN207-03