Dataset: mean_calcification
Deployment: lab_Carpenter_Moorea

Mean calcification rates for the coral Porites rus and alga Hydrolithon onkodes

Lead Principal Investigator:

Robert Carpenter (California State University Northridge, CSUN)

Co-Principal Investigator:

Peter J. Edmunds (California State University Northridge, CSUN)

Contact:

Steeve Comeau (California State University Northridge, CSUN)

BCO-DMO Data Manager:

Danie Kinkade (Woods Hole Oceanographic Institution, WHOI BCO-DMO)

Project:

Moorea Coral Reef Long-Term Ecological Research site (MCR LTER)

RUI: Ocean Acidification- Category 1- The effects of ocean acidification on the organismic biology and community ecology of corals, calcified algae, and coral reefs (OA_Corals)

Current State:

Final no updates expected

Version Date:

2012-11-20

Data URL:

https://www.bco-dmo.org/dataset-deployment/455535/data

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Description

Mean calcification rates for the coral Porites rus and alga Hydrolithon onkodes in varying carbonate chemistry conditions. These data are part of a larger data set containing light and dark calcification rates and experimental chemistry conditions, which in turn are part of experiments performed during July-August 2011 in French Polynesia to test the effect of various concentrations of carbonate and bicarbonate ions on the calcification of a coral and a calcifying alga.

Related References:

Comeau, S., Carpenter, R. C., & Edmunds, P. J. (2013). Coral reef calcifiers buffer their response to ocean acidification using both bicarbonate and carbonate. Proceedings of the Royal Society B: Biological Sciences, 280(1753), 20122374. doi:10.1098/rspb.2012.2374

Methods & Sampling

Dataset acquisition description

For calculating mean calcification rates, buoyant weight (± 1 mg) was recorded before and after the 15 d of incubation, and the difference between the two was converted to dry weight using an aragonite density of 2.93 g cm^-3 for Porites rus, and a calcite density of 2.71 g cm^-3 for Hydrolithon onkodes. Calcification was normalized to surface area estimated using aluminum foil for P. rus, and by digital photography and image analysis (Image J, US NIH) for H. onkodes.

Data Processing Description

Dataset Processing Description

BCO-DMO Processing Notes:

Original data file: “Raw_data_Comeau_et_al_PRSB-1.xls” contained three spreadsheets. This file was split into three separate datasets. Resultant datasets were edited in excel by BCODMO. The following edits were made to the file mean_calcification.dat:

-Added BCO-DMO header
    -edited 'Porites run calcification' to 'calcification_Porites_rus'
    -edited 'Hydrolithon onkodes calcification' to 'calcification_Hydrolithon_onkodes'
    -replaced spaces in condition text with underscores
-Added column for 'date_begin' and 'date_end'
-Added 'lat' and 'lon' column of experiment site (Richard B. Gump Research Site, Moorea, Tahiti)
-Added title, version and PI lines

-Added column for deployment ID 'deploy_id' with "lab_Carpenter_Moorea" as a value.

More information about this dataset deployment

Funding

Award Number	Funding Source
OCE-1041270	NSF Division of Ocean Sciences

Instruments

None available yet

Parameters

Supplied Name	Supplied description	Supplied Units	Standard Name
condition	Description for nine experimental treatments of varying concentrations of carbonate and bicarbonate ions used to test the effects of various carbonate chemistry regimes on coral and calcifying alga.	dimensionless	no_bcodmo_term
calcification_Porites_rus	Mean rate of calcium carbonate (aragonite or calcite) fixation.	mg CaCO3/d/cm	no_bcodmo_term
calcification_Hydrolithon_onkodes	Mean rate of calcium carbonate (aragonite or calcite) fixation.	mg CaCO3/d/cm	no_bcodmo_term
lat	Latitude component of geographic position where experiments were conducted.	decimal degrees	lat
lon	Longitude component of geographic position where experiments were conducted.	decimal degrees	lon
date_begin	Beginning date of experiment trial in local time.	dd/mm/yy	date_begin
date_end	Ending date of experiment trial in local time.	dd/mm/yy	date_end
deploy_id	Unique descriptor for experiments, indicating physical location where they were conducted (lab), lead investigator and lab location.		no_bcodmo_term

Database

Contribute Data

Dataset: mean_calcification
Deployment: lab_Carpenter_Moorea

Dataset acquisition description

Dataset Processing Description

Database

Contribute Data

Dataset: mean_calcificationDeployment: lab_Carpenter_Moorea

Dataset acquisition description

Dataset Processing Description

Dataset: mean_calcification
Deployment: lab_Carpenter_Moorea