Dataset: Boron and Calcium in mussel larvae - mass spec headers
Deployment: Herrmann_lab

Mass spec headers for Boron and Calcium geochemistry of mussel larvae bulk material

Principal Investigator:

Dr Achim D. Herrmann (Louisiana State University, LSU-CSI)

BCO-DMO Data Manager:

Nancy Copley (Woods Hole Oceanographic Institution, WHOI BCO-DMO)

Project:

Development of geochemical proxies to evaluate larval pH-exposure history (OA_Proxies)

Current State:

Final no updates expected

Version:

2014-07-03

Version Date:

2014-07-03

Data URL:

https://www.bco-dmo.org/dataset-deployment/562084/data

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Description

These data are the headers from the mass spectrometer runs of mussel larvae shells, conducted on 4 Jan. 2014 and 1 June 2015.

Methods & Sampling

Dataset acquisition description

The concentrations of B and Ca in each mussel were analyzed using a laser ablation inductively coupled plasma mass spectrometer (LA-ICPMS; Cetac LSX-213; 213 nm laser coupled to an iCap Qc ICPMS) located in the Department of Geology and Geophysics at Louisiana State University. Boron isotopes of bulk mussel larvae and additional B/Ca ratios were measured in the Secondary Ion Mass Spectrometry Labs at Arizona State University using a Cameca IMS 3F.

Data Processing Description

Dataset Processing Description

LA-ICPMS data can be evaluated using Iolite. SIMS data was evaluated using an instrument fractionation factor as established from Bahamian carbonates.

BCO-DMO Data Processing:
In order to serve on the BCO-DMO system, these changes were made to the originally submitted files:
- headers were split off from data
- separated each pair of meta/value into single record
- sorted files by time_start
- added columns for date, run, sample, time_start, meta, and value

More information about this dataset deployment

Funding

Award Number	Funding Source
OCE-1401349	NSF Division of Ocean Sciences

Instruments

Inductively Coupled Plasma Mass Spectrometer

Supplied Name: ICP Mass Spec

Supplied Description:

LA-ICPMS; Cetac LSX-213; 213 nm laser coupled to an iCap Qc ICPMS located in the Department of Geology and Geophysics at Louisiana State University.

Instrument Type

Generic Name: Inductively Coupled Plasma Mass Spectrometer

Acronym: ICP Mass Spec

Community Identifier: http://vocab.nerc.ac.uk/collection/L05/current/LAB15/

Generic Description:

An ICP Mass Spec is an instrument that passes nebulized samples into an inductively-coupled gas plasma (8-10000 K) where they are atomized and ionized. Ions of specific mass-to-charge ratios are quantified in a quadrupole mass spectrometer.

Mass Spectrometer

Supplied Name: Mass Spec

Supplied Description:

Cameca IMS 3F located at the Secondary Ion Mass Spectrometry Labs at Arizona State University

Instrument Type

Generic Name: Mass Spectrometer

Acronym: Mass Spec

Community Identifier: http://vocab.nerc.ac.uk/collection/L05/current/LAB16/

Generic Description:

General term for instruments used to measure the mass-to-charge ratio of ions; generally used to find the composition of a sample by generating a mass spectrum representing the masses of sample components.

Parameters

Supplied Name	Supplied description	Supplied Units	Standard Name
date	date of analysis	yyyymmdd	date
run	mass spec run id	unitless	sample
sample	sample identification	unitless	sample
time_start	time at start of mass spec run	HH:MM:SS	time_start
meta	mass spectrometer parameter	unitless	no_bcodmo_term
value	value of parameter	various	no_bcodmo_term

Database

Contribute Data

Dataset: Boron and Calcium in mussel larvae - mass spec headers
Deployment: Herrmann_lab

Dataset acquisition description

Dataset Processing Description

Database

Contribute Data

Dataset: Boron and Calcium in mussel larvae - mass spec headersDeployment: Herrmann_lab

Dataset acquisition description

Dataset Processing Description

Dataset: Boron and Calcium in mussel larvae - mass spec headers
Deployment: Herrmann_lab