Dataset: Weekly surface water samples from Newport Pier, CA collected between 11 January 2012 and 3 November 2023

ValidatedFinal with updates expectedDOI: 10.26008/1912/bco-dmo.564351.3Version 3 (2025-03-05)Dataset Type:Other Field Results

Principal Investigator, Contact: Adam Martiny (University of California-Irvine)

Co-Principal Investigator: Alyse A. Larkin (University of California-Irvine)

Student: Adam J. Fagan (University of California-Irvine)

Student: Skylar Dominic Gerace (University of California-Irvine)

BCO-DMO Data Manager: Amber D. York (Woods Hole Oceanographic Institution)

Program: Dimensions of Biodiversity (Dimensions of Biodiversity)

Program: Ocean Carbon and Biogeochemistry (OCB)

Project: Biological Controls on the Ocean C:N:P ratios (Biological C:N:P ratios)

Abstract

Weekly surface water samples from Newport Pier, CA, were collected between 11 January 2012 and 3 November 2023. This project is a continuation of a time series with weekly surface water sampling from the Microbes in the Coastal Region of Orange County (MICRO) time series station at Newport Pier (33°36.37’N, 117°55.87’W). We measured dissolved nitrate and phosphate in the water, as well as particulate organic carbon, nitrogen and phosphorus. These data were published in Fagan et al. (2019),...

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Cite Dataset

Associated sequence data are available at The National Center for Biotechnology Information (NCBI) under BioProject PRJNA624320 "Microbes In the Coastal Region of Orange County (MICRO) time series". This dataset includes NCBI accession numbers in the column "NCBI_BioSample". This BioSample accession information and related SRA data are accessible from the BioProject page https://www.ncbi.nlm.nih.gov/bioproject/PRJNA624320/.

Additional metagenomic data across the entire time series is available from the DOE Joint Genome Institute under "Detecting nutrient limitation and coastal biogeochemical responses to El Nino using microbial eco-genomic biomarkers" (award DOI: 10.46936/10.25585/60001365) accessible from page https://genome.jgi.doe.gov/portal/Detnutbiomarkers/Detnutbiomarkers.info.html.

Related Datasets

IsRelatedTo
Dataset: https://genome.jgi.doe.gov/portal/Detnutbiomarkers/Detnutbiomarkers.info.html
Swartout, A., Martiny, A. (2021). Detecting nutrient limitation and coastal biogeochemical responses to El Nino using microbial eco-genomic biomarkers. Joint Genome Insitute (JGI) Genome Portal version:8.18.177. The Regents of the University of California. Available from https://genome.jgi.doe.gov/portal/Detnutbiomarkers/Detnutbiomarkers.info.html
IsRelatedTo
Dataset: http://www.ncbi.nlm.nih.gov/bioproject/PRJNA624320
University of California - Irvine. Microbes In the Coastal Region of Orange County (MICRO) time series. (2020). In: NCBI:BioProject: PRJNA624320 [Internet]. Bethesda, MD: National Library of Medicine (US), National Center for Biotechnology Information; Available from: http://www.ncbi.nlm.nih.gov/bioproject/PRJNA624320.

Related Publications

Results
Fagan, A. J., Moreno, A. R., & Martiny, A. C. (2019). Role of ENSO Conditions on Particulate Organic Matter Concentrations and Elemental Ratios in the Southern California Bight. Frontiers in Marine Science, 6. doi:10.3389/fmars.2019.00386
Results
Larkin, A. A., Moreno, A. R., Fagan, A. J., Fowlds, A., Ruiz, A., & Martiny, A. C. (2020). Persistent El Niño driven shifts in marine cyanobacteria populations. PLOS ONE, 15(9), e0238405. https://doi.org/10.1371/journal.pone.0238405
Results
Larkin, A.A., Brock, M.L., Fagan, A.J., Moreno, A.R., Gerace, S.D., Lees, L.E., Suarez, S.A., Eloe-Fadros, E.A., & Martiny, A. (in press). Climate-driven succession in marine microbiome biodiversity and biogeochemical function. Nature Comm.
Methods
Allison, S. D., Chao, Y., Farrara, J. D., Hatosy, S., & Martiny, A. C. (2012). Fine-Scale Temporal Variation in Marine Extracellular Enzymes of Coastal Southern California. Frontiers in Microbiology, 3. doi:10.3389/fmicb.2012.00301
Methods
Karl, D. M., & Tien, G. (1992). MAGIC: A sensitive and precise method for measuring dissolved phosphorus in aquatic environments. Limnology and Oceanography, 37(1), 105–116. doi:10.4319/lo.1992.37.1.0105

Gerace, S. D., Fagan, A. J., Larkin, A. A., Martiny, A. (2025) Weekly surface water samples from Newport Pier, CA collected between 11 January 2012 and 3 November 2023. Biological and Chemical Oceanography Data Management Office (BCO-DMO). (Version 3) Version Date 2025-03-05 [if applicable, indicate subset used]. doi:10.26008/1912/bco-dmo.564351.3 [access date]

Terms of Use

This dataset is licensed under Creative Commons Attribution 4.0.


If you wish to use this dataset, it is highly recommended that you contact the original principal investigators (PI). Should the relevant PI be unavailable, please contact BCO-DMO (info@bco-dmo.org) for additional guidance. For general guidance please see the BCO-DMO Terms of Use document.

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Funded by the U.S. National Science Foundation