Dataset: Sample key: Dcyl_Symb_2015-2016
Deployment: Coral_Bleaching_FRRP

Dendrogyra cylindrus 23S Illumina 2015-2016 sample key

Principal Investigator:

Dr Mauricio Rodriguez-Lanetty (Florida International University, FIU)

Co-Principal Investigator:

Dr Diego Lirman (University of Miami Rosenstiel School of Marine and Atmospheric Science, UM-RSMAS)

Dr Laurie Richardson (Florida International University, FIU)

BCO-DMO Data Manager:

Nancy Copley (Woods Hole Oceanographic Institution, WHOI BCO-DMO)

Project:

RAPID: A hyper-thermal anomaly in the Florida Reef Tract: An opportunity to explore the mechanisms underpinning patterns of coral bleaching and disease (EMUCoReS)

Data URL:

https://www.bco-dmo.org/dataset-deployment/700109/data

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Description

This dataset includes a key to samples of Dendrogyra cylindrus which were analyzed for 23S on an Illumina platform from three sites in the Florida Reef Tract, one each in the upper, middle and lower Keys in 2015-2016. Tube numbers are matched to sample name, status (pre-bleach, pale, bleached, recovery), region, locations, sampling time point, total number of colonies and number of colonies sampled.

Methods & Sampling

Dataset acquisition description

Data Processing Description

Dataset Processing Description

BCO-DMO Processing Notes:
- added conventional header with dataset name, PI name, version date
- modified parameter names to conform with BCO-DMO naming conventions

More information about this dataset deployment

Funding

Award Number	Funding Source
OCE-1503430	NSF Division of Ocean Sciences
OCE-1503483	NSF Division of Ocean Sciences

Instruments

None available yet

Parameters

Supplied Name	Supplied description	Supplied Units	Standard Name
date_sampled	date sampled	unitless	date
site	collection site	unitless	site
tube	sample tube	unitless	sample
sample_ID	sample identifier ((yyyymmdd.site.colony-num)	unitless	sample
depth	sampling depth	meters	depth
total_num_colonies	total number of Dendrogyra cylindrus colonies	colonies	count
num_colonies_sampled	number of Dendrogyra cylindrus colonies sampled	colonies	count
lat	latitude; north is positive	decimal degrees	lat
lon	longitude; east is postivie	decimal degrees	lon

Database

Contribute Data

Dataset: Sample key: Dcyl_Symb_2015-2016
Deployment: Coral_Bleaching_FRRP

Dataset acquisition description

Dataset Processing Description

Database

Contribute Data

Dataset: Sample key: Dcyl_Symb_2015-2016Deployment: Coral_Bleaching_FRRP

Dataset acquisition description

Dataset Processing Description

Dataset: Sample key: Dcyl_Symb_2015-2016
Deployment: Coral_Bleaching_FRRP