HPLC measured pigments, TM Primary Production casts from R/V Thomas G. Thompson TT045 cruise in the Arabian Sea in 1995 (U.S. JGOFS Arabian Sea project)

Website: https://www.bco-dmo.org/dataset/2549
Version: May 8, 2001
Version Date: 2001-05-08

Project
» U.S. JGOFS Arabian Sea (Arabian Sea)

Program
» U.S. Joint Global Ocean Flux Study (U.S. JGOFS)
ContributorsAffiliationRole
Bidigare, Robert R.University of Hawai'i (UH)Principal Investigator
Chandler, Cynthia L.Woods Hole Oceanographic Institution (WHOI BCO-DMO)BCO-DMO Data Manager


Dataset Description

HPLC measured pigments, samples drawn from "TM" Primary Production casts.


Methods & Sampling

   PI:                Robert R. Bidigare
   of:                University of Hawaii
   dataset:           Pigments, HPLC method, sampled from TM casts
   dates:             March 17, 1995 to April 07, 1995
   location:          N: 19.883  S: 9.9988  W: 58.0035  E: 68.7474
   project/cruise:    Arabian Sea/TTN-045; Process cruise 2 (Spring Intermonsoon)
   ship:              R/V Thomas Thompson
 
 

Data Processing Description

HPLC Pigment methods

Method by Wright et al (Mar. Ecol. Prog. Ser. 1991, 77:183-196) CHLA1, CHLA2, CHLB1 and CHLB2 estimated following the method of Latasa et al (Mar. Chem. 1996, 51:315-324)
Pigment data for P2 & P5: A comparison of the TURNER-determined chlorophyll a concentrations with the HPLC-determined TOTCHLA concentrations (monovinyl chlorophyll a + divinyl chlorophyll a + monovinyl chlorophyllide a; units = ng Chl a equivalents/L) was performed for Process Cruise #2 (TTN-045) and Process Cruise #5 (TTN-050). While good correlations were obtained for both cruises, the slope obtained for Process Cruise #5 was significantly different from 1 (i.e., TURNER > HPLC). This difference was probably caused by the presence of Chl a-related pigments during Process Cruise #5. Thus, we recommend that whenever possible use the HPLC pigment data and not the TURNER pigment data. If HPLC data is not available for a given cast, we further recommend that you use the following equations to transform the TURNER data into HPLC-equivalent concentrations (cf., Babin, M., A. Morel, H. Claustre, A. Bricaud, Z. Kolber and P.G. Falkowski. 1996. Nitrogen- and irradiance-dependent variations of the maximum quantum yield of carbon fixation in eutrophic, mesotrophic and oligotrophic marine systems. Deep-Sea Research, in press). Results of geometric mean regression analyses (reduced major axis): Y = HPLC TOTCHLA (monovinyl chlorophyll a + divinyl chlorophyll a + monovinyl chlorophyllide a), units = ng Chl a equivalents/L X = TURNER chlorophyll a (it is necessary to convert the Turner Chl a concentrations in the Arabian Sea data base from mg/m3 to ng/L by multiplying concentrations by 1000) (1) Process Cruise #2 (TTN-045) HPLC TOTCHLA = TURNER*(0.975) + 4.833 (r = 0.9822, n = 146) (2) Process Cruise #5 (TTN-050) HPLC TOTCHLA = TURNER*(0.708) + 12.881 (r = 0.9772, n = 575) Robert R. Bidigare Department of Oceanography University of Hawaii Honolulu, HI 96822 808-956-6567 (voice mail) 808-956-9516 (fax)

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Data Files

File
HPLC_pigmentsTM.csv
(Comma Separated Values (.csv), 12.73 KB)
MD5:c8945210a6868147dbe444937171083f
Primary data file for dataset ID 2549

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Parameters

ParameterDescriptionUnits
event

event number, from event log

sta

station number, from event log

sta_std

Arabian Sea standard station identifier

cast

cast number, from event log

bot

rosette bottle number

depth_n

nominal sample depth

meters
chlide_a

Chlorophyllide a

nanogram/liter
chl_c3

Chlorophyll c3

nanogram/liter
chl_c

Chlorophyll c1 + chlorophyll c2 + Mg 3,8 divinyl pheoporphyrin a5

nanogram/liter
peridinin

Peridinin

nanogram/liter
fucox_but

19'-Butanoyloxyfucoxanthin

nanogram/liter
fucox

Fucoxanthin

nanogram/liter
fucox_hex

19'-Hexanoyloxyfucoxanthin

nanogram/liter
cis_fucox

Cis-fucoxanthin

nanogram/liter
cis_hex

Cis-19'-hexanoyloxyfucoxanthin

nanogram/liter
prasinox

Prasinoxanthin

nanogram/liter
violax

Violaxanthin

nanogram/liter
diadinox

Diadinoxanthin

nanogram/liter
allox

Alloxanthin

nanogram/liter
diatox

Diatoxanthin

nanogram/liter
lutein

Lutein

nanogram/liter
zeax

Zeaxanthin

nanogram/liter
carotene_a

alpha-carotene

nanogram/liter
carotene_b

beta-carotene

nanogram/liter
chl_b2

Divinyl chlorophyll b

nanogram/liter
chl_b1

Monovinyl chlorophyll b

nanogram/liter
chl_a2

Divinyl chlorophyll a

nanogram/liter
chl_a1

Monovinyl chlorophyll a

nanogram/liter
chl_b_tot

Divinyl chlorophyll b plus Monovinyl chlorophyll b

nanogram/liter
chl_a_tot

Divinyl chlorophyll a plus Monovinyl chlorophyll a plus chlorophyllide a

nanogram/liter


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Instruments

Dataset-specific Instrument Name
Trace Metal Bottle
Generic Instrument Name
Trace Metal Bottle
Dataset-specific Description
Trace Metal (TM) Rosette bottles
Generic Instrument Description
Trace metal (TM) clean rosette bottle used for collecting trace metal clean seawater samples.


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Deployments

TT045

Website
Platform
R/V Thomas G. Thompson
Start Date
1995-03-14
End Date
1995-04-10


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Project Information

U.S. JGOFS Arabian Sea (Arabian Sea)


Coverage: Arabian Sea


The U.S. Arabian Sea Expedition which began in September 1994 and ended in January 1996, had three major components: a U.S. JGOFS Process Study, supported by the National Science Foundation (NSF); Forced Upper Ocean Dynamics, an Office of Naval Research (ONR) initiative; and shipboard and aircraft measurements supported by the National Aeronautics and Space Administration (NASA). The Expedition consisted of 17 cruises aboard the R/V Thomas Thompson, year-long moored deployments of five instrumented surface buoys and five sediment-trap arrays, aircraft overflights and satellite observations. Of the seventeen ship cruises, six were allocated to repeat process survey cruises, four to SeaSoar mapping cruises, six to mooring and benthic work, and a single calibration cruise which was essentially conducted in transit to the Arabian Sea.



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Program Information

U.S. Joint Global Ocean Flux Study (U.S. JGOFS)


Coverage: Global


The United States Joint Global Ocean Flux Study was a national component of international JGOFS and an integral part of global climate change research.

The U.S. launched the Joint Global Ocean Flux Study (JGOFS) in the late 1980s to study the ocean carbon cycle. An ambitious goal was set to understand the controls on the concentrations and fluxes of carbon and associated nutrients in the ocean. A new field of ocean biogeochemistry emerged with an emphasis on quality measurements of carbon system parameters and interdisciplinary field studies of the biological, chemical and physical process which control the ocean carbon cycle. As we studied ocean biogeochemistry, we learned that our simple views of carbon uptake and transport were severely limited, and a new "wave" of ocean science was born. U.S. JGOFS has been supported primarily by the U.S. National Science Foundation in collaboration with the National Oceanic and Atmospheric Administration, the National Aeronautics and Space Administration, the Department of Energy and the Office of Naval Research. U.S. JGOFS, ended in 2005 with the conclusion of the Synthesis and Modeling Project (SMP).



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Funding

Funding SourceAward
National Science Foundation (NSF)

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