Bio Optical Profiler data from R/V Thomas G. Thompson cruises TT007, TT008, TT011, TT012 in the Equatorial Pacific in 1992 during the U.S. JGOFS Equatorial Pacific (EqPac) project

Website: https://www.bco-dmo.org/dataset/2664
Version: final
Version Date: 1995-06-16

Project
» U.S. JGOFS Equatorial Pacific (EqPac)

Program
» U.S. Joint Global Ocean Flux Study (U.S. JGOFS)
ContributorsAffiliationRole
Davis, CurtissU.S. Naval Research Laboratory (NRL)Principal Investigator
Trees, Charles C.San Diego State University (SDSU)Principal Investigator
Chandler, Cynthia L.Woods Hole Oceanographic Institution (WHOI BCO-DMO)BCO-DMO Data Manager


Dataset Description

Bio Optical Profiler Data


Methods & Sampling

See Platform deployments for cruise specific documentation


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Parameters

ParameterDescriptionUnits
event

event/operation number from event log

sta

station number fro event log

cast

optical profile cast number

cast_type

either upcast or downcast

lat

latitude, negative = south

decimal degrees
lon

longitude, negative = west

decimal degrees
depth

depth_of_observation

meters
Es_n456

spectral irradiance above sea su wave length of 456nm

uW/cm^2nm^-1*10^-3
Es_n488

spectral irradiance above sea su wave length of 488nm

uW/cm^2nm^-1*10^-3
Es_n532

spectral irradiance above sea su wave length of 532nm

uW/cm^2nm^-1*10^-3
Es_n670

spectral irradiance above sea su wave length of 670nm

uW/cm^2nm^-1*10^-3
Kd_452

diffuse attenuation coefficient for Ed 452

m^-1*10^-4
Ed_452

downwelled irradiance at wave length of 452

uW/cm^2nm^-1*10^-4
Kd_440

diffuse attenuation coefficient for Ed 440

m^-1*10^-4
Ed_440

downwelled irradiance at wave length of 440

uW/cm^2nm^-1*10^-4
Kd_486

diffuse attenuation coefficient for Ed 486

m^-1*10^-4
Ed_486

downwelled irradiance at wave length of 486

uW/cm^2nm^-1*10^-4
Kd_519

diffuse attenuation coefficient for Ed 519

m^-1*10^-4
Ed_519

downwelled irradiance at wave length of 519

uW/cm^2nm^-1*10^-4
Kd_530

diffuse attenuation coefficient for Ed 530

m^-1*10^-4
Ed_530

downwelled irradiance at wave length of 530

uW/cm^2nm^-1*10^-4
Kd_548

diffuse attenuation coefficient for Ed 548

m^-1*10^-4
Ed_548

downwelled irradiance at wave length of 548

uW/cm^2nm^-1*10^-4
Kd_589

diffuse attenuation coefficient for Ed 589

m^-1*10^-4
Ed_589

downwelled irradiance at wave length of 589

uW/cm^2nm^-1*10^-4
Kd_632

diffuse attenuation coefficient for Ed 632

m^-1*10^-4
Ed_632

downwelled irradiance at wave length of 632

uW/cm^2nm^-1*10^-4
Kd_655

diffuse attenuation coefficient for Ed 655

m^-1*10^-4
Ed_655

downwelled irradiance at wave length of 655

uW/cm^2nm^-1*10^-4
Kd_670

diffuse attenuation coefficient for Ed 670

m^-1*10^-4
Ed_670

downwelled irradiance at wave length of 670

uW/cm^2nm^-1*10^-4
Kd_696

diffuse attenuation coefficient for Ed 696

m^-1*10^-4
Ed_696

downwelled irradiance at wave length of 696

uW/cm^2nm^-1*10^-4
K_par

diffuse attenuation coefficient for E par

m^-1*10^-4
E_par

underwater photosynthetically available radiation

uE/m^2/sec*10^-4
Ku_439

diffuse attenuation coefficient for Eu 439

m^-1*10^-4
Eu_439

upwelled irradiance at wave length of 439

uW/cm^2nm^-1*10^-4
Ku_453

diffuse attenuation coefficient for Eu 453

m^-1*10^-4
Eu_453

upwelled irradiance at wave length of 453

uW/cm^2nm^-1*10^-4
Ku_486

diffuse attenuation coefficient for Eu 486

m^-1*10^-4
Eu_486

upwelled irradiance at wave length of 486

uW/cm^2nm^-1*10^-4
Ku_529

diffuse attenuation coefficient for Eu 529

um^-1*10^-4
Eu_529

upwelled irradiance at wave length of 529

uW/cm^2nm^-1*10^-4
Ku_549

diffuse attenuation coefficient for Eu 549

m^-1*10^-4
Eu_549

upwelled irradiance at wave length of 549

uW/cm^2nm^-1*10^-4
Ku_589

diffuse attenuation coefficient for Eu 589

m^-1*10^-4
Eu_589

upwelled irradiance at wave length of 589

uW/cm^2nm^-1*10^-4
Ku_632

diffuse attenuation coefficient for Eu 632

m^-1*10^-4
Eu_632

upwelled irradiance at wave length of 632

uW/cm^2nm^-1*10^-4
Ku_670

diffuse attenuation coefficient for

Eu 670
Eu_670

upwelled irradiance at wave length of 670

uW/cm^2nm^-1*10^-4
Kl_442

diffuse attenuation coefficient for Lu 442

m^-1*10^-4
Lu_442

upwelled radiance at wave length of 442

uW/cm^2nm^-1sr^-1*10^-5
Kl_456

diffuse attenuation coefficient for Lu 456

m^-1*10^-4
Lu_456

upwelled radiance at wave length of 456

uW/cm^2nm^-1sr^-1*10^-5
Kl_489

diffuse attenuation coefficient for Lu 489

m^-1*10^-4
Lu_489

upwelled radiance at wave length of 489

uW/cm^2nm^-1sr^-1*10^-5
Kl_531

diffuse attenuation coefficient for Lu 531

m^-1*10^-4
Lu_531

upwelled radiance at wave length of 531

uW/cm^2nm^-1sr^-1*10^-5
Kl_550

diffuse attenuation coefficient for Lu 550

m^-1*10^-4
Lu_550

upwelled radiance at wave length of 550

uW/cm^2nm^-1sr^-1*10^-5
Kl_590

diffuse attenuation coefficient for Lu 590

m^-1*10^-4
Lu_590

upwelled radiance at wave length of 590

uW/cm^2nm^-1sr^-1*10^-5
Kl_711

diffuse attenuation coefficient for Lu 711

m^-1*10^-4
Lu_711

upwelled radiance at wave length of 711

uW/cm^2nm^-1sr^-1*10^-5
temp

CTD derived water temperature

millidegrees C
beam

particle beam attenuation coefficient

meters
fluor

chlorophyll-a fluorescence

millivolts
year

year as YY

mon

month as MM

day

day as DD

time

time in local hours and minutes

comment

sky conditions etc.

pts_per_meter

number of original points per one meter bin

count
tilt

instrument tilt

degrees range -45 to 45
roll

instrument roll

degrees range -45 to 45
sal

CTD salinity calculated from conductivity

PPT
cond

CTD conductivity

sigma

calculated density

paruw

downwelling scalar PAR at depth

E17 quanta/sec/cm^2
ed_410

downwelling spectral irradiance at depth

uW/cm^2/nm
ed_441

downwelling spectral irradiance at depth

uW/cm^2/nm
ed_488

downwelling spectral irradiance at depth

uW/cm^2/nm
ed_520

downwelling spectral irradiance at depth

uW/cm^2/nm
ed_550

downwelling spectral irradiance at depth

uW/cm^2/nm
ed_560

downwelling spectral irradiance at depth

uW/cm^2/nm
ed_633

downwelling spectral irradiance at depth

uW/cm^2/nm
ed_656

downwelling spectral irradiance at depth

uW/cm^2/nm
ed_671

downwelling spectral irradiance at depth

uW/cm^2/nm
ed_683

downwelling spectral irradiance at depth

uW/cm^2/nm
ed_694

downwelling spectral irradiance at depth

uW/cm^2/nm
ed_710

downwelling spectral irradiance at depth

uW/cm^2/nm
eu_410

upwelling spectral irradiance at depth

uW/cm^2/nm
eu_441

upwelling spectral irradiance at depth

uW/cm^2/nm
eu_488

upwelling spectral irradiance at depth

uW/cm^2/nm
eu_520

upwelling spectral irradiance at depth

uW/cm^2/nm
eu_550

upwelling spectral irradiance at depth

uW/cm^2/nm
eu_671

upwelling spectral irradiance at depth

uW/cm^2/nm
eu_694

upwelling spectral irradiance at depth

uW/cm^2/nm
lu_410

upwelling spectral radiance at depth

uW/cm^2/nm/str
lu_441

upwelling spectral radiance at depth

uW/cm^2/nm/str
lu_488

upwelling spectral radiance at depth

uW/cm^2/nm/str
lu_520

upwelling spectral radiance at depth

uW/cm^2/nm/str
lu_633

upwelling spectral radiance at depth

uW/cm^2/nm/str
lu_656

upwelling spectral radiance at depth

uW/cm^2/nm/str
lu_683

upwelling spectral radiance at depth

uW/cm^2/nm/str
e_410

spectral irradiance above sea surface

uW/cm^2/nm
e_520

spectral irradiance above sea surface

uW/cm^2/nm
e_589

spectral irradiance above sea surface

uW/cm^2/nm
e_683

spectral irradiance above sea surface

uW/cm^2/nm
Kd_518

diffuse attenuation coefficient for Ed_519

m^-1*10^-4
Ed_518

downwelled irradiance at wave length of 519

uW/cm^2nm^-1*10^-4
Kd_669

diffuse attenuation coefficient for Ed_670

m^-1*10^-4
Ed_669

downwelled irradiance at wave length of 670

uW/cm^2nm^-1*10^-4
Kl_455

diffuse attenuation coefficient for Lu_456

m^-1*10^-4
Lu_455

upwelled radiance at wave length of 456

uW/cm^2nm^-1sr^-1*10^-5
Kl_591

diffuse attenuation coefficient for Lu_590

m^-1*10^-4
Lu_591

upwelled radiance at wave length of 590

uW/cm^2nm^-1sr^-1*10^-5
Kl_685

diffuse attenuation coefficient for Lu_685

m^-1*10^-4
Lu_685

upwelled radiance at wave length of 685

uW/cm^2nm^-1sr^-1*10^-5


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Instruments

Dataset-specific Instrument Name
Bio-Optical Profiling System
Generic Instrument Name
Bio-Optical Profiling System
Generic Instrument Description
Bio-Optical Profiling System (BOPS) is an updated version of the BOPS originally developed by Smith et al. (1984) and is used to collect optical data. The heart of the BOPS is a Biospherical instruments MER-1048 Spectroradiometer which measures up and downwelling spectral irradiance and upwelling spectral radiance. The MER-1048 also has sensors for Photosynthetically Available Radiation (PAR), depth, tilt and roll. In addition, temperature and conductivity are measured with a Sea-Bird CTD, chlorophyll fluorescence is measured with a Sea Tech fluorometer and beam transmission with a Sea Tech 25-cm transmissometer. The Mer-1048 acquires all the data 16 times a second, averages it to four records a second and sends it up the cable to a deck box and a Compaq-286 computer which stores the data on the hard disk. Additionally, a deck cell measures the downwelling surface irradiance in four spectral channels. Also surface PAR is measured continuously using a Biospherical Instruments QSR-240 Integrating PAR sensor. The profile data is commonly filtered to remove obvious data spikes and then binned into one-meter averages. Raymond C. Smith, Charles R. Booth, and Jeffrey L. Star, "Oceanographic biooptical profiling system," Appl. Opt. 23, 2791-2797 (1984).


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Deployments

TT007

Website
Platform
R/V Thomas G. Thompson
Start Date
1992-01-30
End Date
1992-03-13
Description
Purpose: Spring Survey Cruise; 12°N-12°S at 140°W TT007 was one of five cruises conducted in 1992 in support of the U.S. Equatorial Pacific (EqPac) Process Study. The five EqPac cruises aboard R/V Thomas G. Thompson included two repeat meridional sections (12°N - 12°S), 2 equatorial surveys, and a benthic survey (all at 140° W). The scientific objectives of this study were to observe the processes in the Equatorial Pacific controlling the fluxes of carbon and related elements between the atmosphere, euphotic zone, and deep ocean. As luck would have it, the survey window coincided with an El Nino event. A bonus for the research team.

Methods & Sampling
PI: Chuck Trees of: San Diego State University dataset: Bio Optical Profiler Data dates: February 04, 1992 to March 08, 1992 location: N: 12.0147 S: -12.0293 W: -140.434 E: -134.9978 project/cruise: EQPAC/TT007 - Spring Survey ship: Thomas Thompson note: Surface irradiance (Es_n) wave lengths are only relative values and should not be used as absolute values. These data are used for internal processing of the radiometric data. EqPac Protocol 24

TT008

Website
Platform
R/V Thomas G. Thompson
Start Date
1992-03-19
End Date
1992-04-15
Description
Purpose: Spring Time Series; Equator, 140°W TT008 was one of five cruises conducted in 1992 in support of the U.S. Equatorial Pacific (EqPac) Process Study. The five EqPac cruises aboard R/V Thomas G. Thompson included two repeat meridional sections (12°N - 12°S), 2 equatorial surveys, and a benthic survey (all at 140° W). The scientific objectives of this study were to observe the processes in the Equatorial Pacific controlling the fluxes of carbon and related elements between the atmosphere, euphotic zone, and deep ocean. As luck would have it, the survey window coincided with an El Nino event. A bonus for the research team.

Methods & Sampling
PI: Curt Davis of: Naval Research Laboratory dataset: Bio-Optical Profiler Data dates: March 25, 1992 to April 14, 1992 location: N: 9.0012 S: -0.0365 W: -140.029 E: -139.859 project/cruise: EQPAC/TT008 - Spring time Series ship: Thomas Thompson PI-Notes EqPac Protocol 24

TT011

Website
Platform
R/V Thomas G. Thompson
Start Date
1992-08-05
End Date
1992-09-18
Description
Purpose: Fall Survey; 12°N-12°S at 140°W TT011 was one of five cruises conducted in 1992 in support of the U.S. Equatorial Pacific (EqPac) Process Study. The five EqPac cruises aboard R/V Thomas G. Thompson included two repeat meridional sections (12°N - 12°S), 2 equatorial surveys, and a benthic survey (all at 140° W). The scientific objectives of this study were to observe the processes in the Equatorial Pacific controlling the fluxes of carbon and related elements between the atmosphere, euphotic zone, and deep ocean. As luck would have it, the survey window coincided with an El Nino event. A bonus for the research team.

Methods & Sampling
PI: Chuck Trees of: San Diego State University dataset: Bio-Optical Profiler Data dates: August 10, 1992 to September 13, 1992 location: N: 12.0033 S: -11.9217 W: -140.84 E: -134.9467 project/cruise: EQPAC/TT011 - Fall Survey ship: Thomas Thompson PI-Notes: Surface irradiance (Es_n) wave lengths are only relative values and should not be used as absolute values. These data are used for internal processing of the radiometric data. EqPac Protocol 24

TT012

Website
Platform
R/V Thomas G. Thompson
Start Date
1992-09-24
End Date
1992-10-21
Description
Purpose: Fall Time Series; Equator, 140°W TT012 was one of five cruises conducted in 1992 in support of the U.S. Equatorial Pacific (EqPac) Process Study. The five EqPac cruises aboard R/V Thomas G. Thompson included two repeat meridional sections (12°N - 12°S), 2 equatorial surveys, and a benthic survey (all at 140° W). The scientific objectives of this study were to observe the processes in the Equatorial Pacific controlling the fluxes of carbon and related elements between the atmosphere, euphotic zone, and deep ocean. As luck would have it, the survey window coincided with an El Nino event. A bonus for the research team.

Methods & Sampling
PI: Curt Davis of: Naval Research Laboratory dataset: Bio-Optical Profiler Data dates: September 26, 1992 to October 21, 1992 location: N: 0.0645 S: -11.9958 W: -145.3995 E: -139.8992 project/cruise: EQPAC/TT012 - Fall Time Series ship: Thomas Thompson PI-Notes EqPac Protocol 24


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Project Information

U.S. JGOFS Equatorial Pacific (EqPac)


Coverage: Equatorial Pacific


The U.S. EqPac process study consisted of repeat meridional sections (12°N -12°S) across the equator in the central and eastern equatorial Pacific from 95°W to 170°W during 1992. The major scientific program was focused at 140° W consisting of two meridional surveys, two equatorial surveys, and a benthic survey aboard the R/V Thomas Thompson. Long-term deployments of current meter and sediment trap arrays augmented the survey cruises. NOAA conducted boreal spring and fall sections east and west of 140°W from the R/V Baldridge and R/V Discoverer. Meteorological and sea surface observations were obtained from NOAA's in place TOGA-TAO buoy network.

The scientific objectives of this study were to determine the fluxes of carbon and related elements, and the processes controlling these fluxes between the Equatorial Pacific euphotic zone and the atmosphere and deep ocean. A broad overview of the program at the 140°W site is given by Murray et al. (Oceanography, 5: 134-142, 1992). A full description of the Equatorial Pacific Process Study, including the international context and the scientific results, appears in a series of Deep-Sea Research Part II special volumes:

Topical Studies in Oceanography, A U.S. JGOFS Process Study in the Equatorial Pacific (1995), Deep-Sea Research Part II, Volume 42, No. 2/3.

Topical Studies in Oceanography, A U.S. JGOFS Process Study in the Equatorial Pacific. Part 2 (1996), Deep-Sea Research Part II, Volume 43, No. 4/6.

Topical Studies in Oceanography, A U.S. JGOFS Process Study in the Equatorial Pacific (1997), Deep-Sea Research Part II, Volume 44, No. 9/10.

Topical Studies in Oceanography, The Equatorial Pacific JGOFS Synthesis (2002), Deep-Sea Research Part II, Volume 49, Nos. 13/14.



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Program Information

U.S. Joint Global Ocean Flux Study (U.S. JGOFS)


Coverage: Global


The United States Joint Global Ocean Flux Study was a national component of international JGOFS and an integral part of global climate change research.

The U.S. launched the Joint Global Ocean Flux Study (JGOFS) in the late 1980s to study the ocean carbon cycle. An ambitious goal was set to understand the controls on the concentrations and fluxes of carbon and associated nutrients in the ocean. A new field of ocean biogeochemistry emerged with an emphasis on quality measurements of carbon system parameters and interdisciplinary field studies of the biological, chemical and physical process which control the ocean carbon cycle. As we studied ocean biogeochemistry, we learned that our simple views of carbon uptake and transport were severely limited, and a new "wave" of ocean science was born. U.S. JGOFS has been supported primarily by the U.S. National Science Foundation in collaboration with the National Oceanic and Atmospheric Administration, the National Aeronautics and Space Administration, the Department of Energy and the Office of Naval Research. U.S. JGOFS, ended in 2005 with the conclusion of the Synthesis and Modeling Project (SMP).



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