Contributors | Affiliation | Role |
---|---|---|
McGillicuddy, Dennis J. | Woods Hole Oceanographic Institution (WHOI) | Principal Investigator |
Copley, Nancy | Woods Hole Oceanographic Institution (WHOI BCO-DMO) | BCO-DMO Data Manager |
This dataset includes pigments from HPLC analysis of bottle samples collected during EDDIES project R/V Oceanus cruises OC404-01, OC404-04, OC415-01 and OC415-03 from the Sargasso Sea, June 11, 2004 to August 24, 2005.
Methodology: analytical protocols
Technician: Jason Perl (jperl@chors.sdsu.edu) Center for Hydro-Optics & Remote Sensing San Diego State University Research Foundation Change history: YYMMDD 070525: downloaded original data from EDDIES data Web site (OC404-1: DM Pigs final 29Jul05.xls); (OC404-4: 200412c_DM.xls, 200501a_DM.xls, 200504a_DM.xls); (OC415-1: 200508b_DM-ori.xls, 200509c_DM.xls); (OC415-3: 200603 DM Final.xls) prepared for OCB database by Nancy Copley, BCO-DMO 071101: added to OCB database by Cyndy Chandler, BCO-DMO event number is from cruise event log (added by DMO) PI note: 080317: Recalibrated data are expected from NASA during the second half of 2008.
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HPLC_OC.csv (Comma Separated Values (.csv), 657.53 KB) MD5:94472abc8ce4be3d5b65a9c9214e3033 Primary data file for dataset ID 3024 |
Parameter | Description | Units |
Cruise_ID | cruise ID designation code | alphanumeric |
event | unique sampling event number in YYYYMMDDhhmm format | unitless |
date | date (GMT); start of sampling in YYYYMMDD format | unitless |
time | time of measurement (GMT) | hhmm |
lon | longitude at start of measurement; negative denotes West | decimal degrees |
lat | latitude at start of measurement; negative denotes South | decimal degrees |
sta | station number | dimensionless |
depth_n | depth; nominal | meters |
SID_HPLC | Sample ID, corresponds with bottle_SID | dimensionless |
run_ID_HPLC | run ID assigned by HPLC lab | alphanumeric |
run_PI | run ID for PI, various | alphanumeric |
vol_filt_ml | volume water filtered for analysis | milliliters |
chl_a_fluor | chlorophyll-a by Fluorometric methods | micrograms/liter |
pheo_fluor | pheopigments by Fluorometric methods | micrograms/liter |
chl_c3 | HPLC Chlorophyll_c3 | micrograms/liter |
chl_c2 | HPLC Chlorophyll_c2 | micrograms/liter |
chl_c1 | HPLC Chlorophyll_c1 | micrograms/liter |
chlide_a | HPLC Chlorophyllide a | micrograms/liter |
phide | HPLC Pheophorbide a | micrograms/liter |
peridinin | HPLC Peridinin | micrograms/liter |
fucox_but | HPLC 19' - Butanoyloxyfucoxanthin | micrograms/liter |
fucox | HPLC fucoxanthin | micrograms/liter |
neox | HPLC neoxanthin | micrograms/liter |
prasinox | HPLC Prasinoxanthin | micrograms/liter |
violax | HPLC violaxanthin | micrograms/liter |
fucox_hex | HPLC 19' - Hexanoyloxyfucoxanthin | micrograms/liter |
diadinox | HPLC Diadinoxanthin | micrograms/liter |
allox | HPLC Alloxanthin | micrograms/liter |
diatox | HPLC Diatoxanthin | micrograms/liter |
zeax | HPLC Zeaxanthin | micrograms/liter |
lutein | HPLC Lutein | micrograms/liter |
gyro | HPLC Gyroxanthin-Diester | micrograms/liter |
chl_b_dv | HPLC Divinyl_Chl_b | micrograms/liter |
chl_b_mv | HPLC Monovinyl_Chl_b | micrograms/liter |
chl_a_allomer | HPLC chlorophyll a allomer | micrograms/liter |
chl_a_dv | Divinyl chlorophyll a; based on the C18 method regression between 436nm and 450nm | micrograms/liter |
chl_a_mv_peak | HPLC Monovinyl_Chl_a, peak May contain some DVa | micrograms/liter |
chl_a_epimer | HPLC chlorophyll a epimer | micrograms/liter |
pheo | HPLC Pheophytin a | micrograms/liter |
chl_b | HPLC Chlorophyll b | micrograms/liter |
carotene_a | HPLC alpha Carotene | micrograms/liter |
carotene_b | HPLC beta Carotene | micrograms/liter |
carotene | HPLC Total Carotenes (alpha + beta) | micrograms/liter |
chl_a_mv | Monovinyl chlorophyll a; based on the C18 method regression between 436nm and 450nm | micrograms/liter |
chl_a_tot | Total Chlorophyll a =chlide_a +allomer +epimer +MVa +Dva | micrograms/liter |
comments | comments and notes | dimensionless |
Dataset-specific Instrument Name | Fluorometer |
Generic Instrument Name | Fluorometer |
Dataset-specific Description | Turner Fluorometer |
Generic Instrument Description | A fluorometer or fluorimeter is a device used to measure parameters of fluorescence: its intensity and wavelength distribution of emission spectrum after excitation by a certain spectrum of light. The instrument is designed to measure the amount of stimulated electromagnetic radiation produced by pulses of electromagnetic radiation emitted into a water sample or in situ. |
Dataset-specific Instrument Name | High Performance Liquid Chromatograph |
Generic Instrument Name | High-Performance Liquid Chromatograph |
Generic Instrument Description | A High-performance liquid chromatograph (HPLC) is a type of liquid chromatography used to separate compounds that are dissolved in solution. HPLC instruments consist of a reservoir of the mobile phase, a pump, an injector, a separation column, and a detector. Compounds are separated by high pressure pumping of the sample mixture onto a column packed with microspheres coated with the stationary phase. The different components in the mixture pass through the column at different rates due to differences in their partitioning behavior between the mobile liquid phase and the stationary phase. |
Dataset-specific Instrument Name | Niskin Bottle |
Generic Instrument Name | Niskin bottle |
Generic Instrument Description | A Niskin bottle (a next generation water sampler based on the Nansen bottle) is a cylindrical, non-metallic water collection device with stoppers at both ends. The bottles can be attached individually on a hydrowire or deployed in 12, 24, or 36 bottle Rosette systems mounted on a frame and combined with a CTD. Niskin bottles are used to collect discrete water samples for a range of measurements including pigments, nutrients, plankton, etc. |
Website | |
Platform | R/V Oceanus |
Report | |
Start Date | 2004-06-11 |
End Date | 2004-07-03 |
Description | EDDIES 2004 Survey 1 cruise
Funded by: NSF OCE-0241310
Original cruise data are available from the NSF R2R data catalog (Cruise DOI: 10.7284/900337) |
Website | |
Platform | R/V Oceanus |
Report | |
Start Date | 2004-07-25 |
End Date | 2004-08-12 |
Description | EDDIES project 2004 Survey 2 cruise
Funded by: NSF OCE-0241310
Original cruise data are available from the NSF R2R data catalog |
Website | |
Platform | R/V Oceanus |
Report | |
Start Date | 2005-06-20 |
End Date | 2005-07-15 |
Description | EDDIES project 2005 Survey 1 cruise
Funded by: NSF OCE-0241310
Original cruise data are available from the NSF R2R data catalog |
Website | |
Platform | R/V Oceanus |
Report | |
Start Date | 2005-08-07 |
End Date | 2005-08-26 |
Description | EDDIES project 2005 Survey 2 cruise
Funded by: NSF OCE-0241310
Original cruise data are available from the NSF R2R data catalog |
The original title of this project from the NSF award is: Collaborative Research: Impacts of Eddies and Mixing on Plankton Community Structure and Biogeochemical Cycling in the Sargasso Sea".
Prior results have documented eddy-driven transport of nutrients into the euphotic zone and the associated accumulation of chlorophyll. However, several key aspects of mesoscale upwelling events remain unresolved by the extant database, including: (1) phytoplankton physiological response, (2) changes in community structure, (3) impact on export out of the euphotic zone, (4) rates of mixing between the surface mixed layer and the base of the euphotic zone, and (5) implications for biogeochemistry and differential cycling of carbon and associated bioactive elements. This leads to the following hypotheses concerning the complex, non-linear biological regulation of elemental cycling in the ocean:
H1: Eddy-induced upwelling, in combination with diapycnal mixing in the upper ocean, introduces new nutrients into the euphotic zone.
H2: The increase in inorganic nutrients stimulates a physiological response within the phytoplankton community.
H3: Differing physiological responses of the various species bring about a shift in community structure.
H4: Changes in community structure lead to increases in export from, and changes in biogeochemical cycling within, the upper ocean.
Andrews, J.E., Hartin, C., and Buesseler, K.O.. "7Be Analyses in Seawater by Low Background Gamma-Spectroscopy.," Journal of Radioanalytical and Nuclear Chemistry, v.277, 2008, p. 253.
Andrews, J.E., Hartin, C., Buesseler, K.O.. "7Be Analyses in Seawater by Low Background Gamma-Spectroscopy," Journal of Radioanalytical and Nuclear Chemistry, v.277, 2008, p. 253.
Benitez-Nelson, C.R. and McGillicuddy, D.J.. "Mesoscale Physical-Biological-Biogeochemical Linkages in the Open Ocean: An Introduction to the Results of the E-Flux and EDDIES Programs.," Deep Sea Research II, v.55, 2008, p. 1133.
Benitez-Nelson, C.R. and McGillicuddy, D.J.. "Mesoscale Physical-Biological-Biogeochemical Linkages in the Open Ocean: An Introduction to the Results of the E-Flux and EDDIES Programs," Deep-Sea Research II, v.55, 2008, p. 1133.
Bibby, T.S., Gorbunov, M.Y., Wyman, K.W., Falkowski, P.G.. "Photosynthetic community responses to upwelling in mesoscale eddies in the subtropical North Atlantic and Pacific Oceans," Deep-Sea Research Part II: Topical Studies in Oceanography, v.55, 2008, p. 1310.
Buesseler, K.O., Lamborg, C., Cai, P., Escoube, R., Johnson, R., Pike, S., Masque, P., McGillicuddy, D.J., Verdeny, E.. "Particle Fluxes Associated with Mesoscale Eddies in the Sargasso Sea," Deep Sea Research II, v.55, 2008, p. 1426.
Carlson, C.A., del Giorgio, P., Herdl, G.. "Microbes and the dissipation of energy and respiration: From cells to ecosystems," Oceanography, v.20, 2007, p. 89.
Davis, C.S., and McGillicuddy, D.J.. "Transatlantic Abundance of the N2-Fixing Colonial Cyanobacterium Trichodesmium," Science, v.312, 2006, p. 1517.
Ewart, C.S., Meyers, M.K., Wallner, E., McGillicuddy, D.J., Carlson, C.A.. "Microbial Dynamics in Cyclonic and Anticyclonic Mode-Water Eddies in the Northwestern Sargasso Sea," Deep Sea Research II, v.55, 2008, p. 1334.
Ewart, C.S., Meyers, M.K., Wallner, E., McGillicuddy, D.J., Carlson, C.A.. "Microbial Dynamics in Cyclonic and Anticyclonic Mode-Water Eddies in the Northwestern Sargasso Sea," Deep-Sea Research II, v.55, 2008, p. 1334.
Goldthwait, S.A. and Steinberg, D.K.. "Elevated biomass of mesozooplankton and enhanced fecal pellet flux in cyclonic and mode-water eddies in the Sargasso Sea," Deep-Sea Research Part II: Topical Studies in Oceanography, v.55, 2008, p. 1360.
Greenan, B.J.W.. "Shear and Richardson number in a mode-water eddy," Deep-Sea Research Part II: Topical Studies in Oceanography, v.55, 2008, p. 1161.
Jenkins, W.J., McGillicuddy, D.J., and Lott III, D.E.. "The Distributions of, and Relationship Between 3 He and Nitrate in Eddies," Deep Sea Research II, v.55, 2008, p. 1389.
Jenkins, W.J., McGillicuddy, D.J., Lott III, D.E.. "The Distributions of, and Relationship Between 3 He and Nitrate in Eddies," Deep-Sea Research II, v.55, 2008, p. 1389.
Ledwell, J.R., McGillicuddy, D.J., and Anderson, L.A.. "Nutrient Flux into an Intense Deep Chlorophyll Layer in a Mode-water Eddy.," Deep Sea Research II, v.55, 2008, p. 1139.
Ledwell, J.R., McGillicuddy, D.J., Anderson, L.A.. "Nutrient Flux into an Intense Deep Chlorophyll Layer in a Mode-water Eddy," Deep-Sea Research II, v.55, 2008, p. 1139.
Li, Q.P. and Hansell, D.A.. "Intercomparison and coupling of MAGIC and LWCC techniques for trace analysis of phosphate in seawater," Analytical Chemica Acta, v.611, 2008, p. 68.
Li, Q.P., Hansell, D.A., McGillicuddy, D.J., Bates, N.R., Johnson, R.J.. "Tracer-based assessment of the origin and biogeochemical transformation of a cyclonic eddy in the Sargasso Sea," Journal of Geophysical Research, v.113, 2008, p. 10006.
Li, Q.P., Hansell, D.A., Zhang, J.-Z.. "Underway monitoring of nanomolar nitrate plus nitrite and phosphate in oligotrophic seawater," Limnology and Oceanography: Methods, v.6, 2008, p. 319.
Li, Q.P., Zhang, J.-Z., Millero, F.J., Hansell, D.A.. "Continuous colorimetric determination of trace ammonium in seawater with a long-path liquid waveguide capillary cell," Marine Chemistry, v.96, 2005, p. 73.
McGillicuddy, D.J., et. al.. "Eddy/Wind Interactions Stimulate Extraordinary Mid-Ocean Plankton Blooms," Science, v.316, 2007, p. 1021.
McGillicuddy, D.J., Ledwell, J.R., and Anderson, L.A.. "Response to Comment on "Eddy/Wind Interactions Stimulate Extraordinary Mid-Ocean Plankton Bloom".," Science, v.320, 2008.
McGillicuddy, D.J., Ledwell, J.R., Anderson, L.A.. "Response to Comment on "Eddy/Wind Interactions Stimulate Extraordinary Mid-Ocean Plankton Bloom"," Science, v.320, 2008.
McGillicuddy, et. al.. "Eddy/Wind Interactions Stimulate Extraordinary Mid-Ocean Plankton Blooms.," Science, v.316, 2007, p. 1021.
Mourino B., and McGillicuddy, D.J.. "Mesoscale Variability in the Metabolic Balance of the Sargasso Sea," Limnology & Oceanography, v.51, 2006, p. 2675.
The Ocean Carbon and Biogeochemistry (OCB) program focuses on the ocean's role as a component of the global Earth system, bringing together research in geochemistry, ocean physics, and ecology that inform on and advance our understanding of ocean biogeochemistry. The overall program goals are to promote, plan, and coordinate collaborative, multidisciplinary research opportunities within the U.S. research community and with international partners. Important OCB-related activities currently include: the Ocean Carbon and Climate Change (OCCC) and the North American Carbon Program (NACP); U.S. contributions to IMBER, SOLAS, CARBOOCEAN; and numerous U.S. single-investigator and medium-size research projects funded by U.S. federal agencies including NASA, NOAA, and NSF.
The scientific mission of OCB is to study the evolving role of the ocean in the global carbon cycle, in the face of environmental variability and change through studies of marine biogeochemical cycles and associated ecosystems.
The overarching OCB science themes include improved understanding and prediction of: 1) oceanic uptake and release of atmospheric CO2 and other greenhouse gases and 2) environmental sensitivities of biogeochemical cycles, marine ecosystems, and interactions between the two.
The OCB Research Priorities (updated January 2012) include: ocean acidification; terrestrial/coastal carbon fluxes and exchanges; climate sensitivities of and change in ecosystem structure and associated impacts on biogeochemical cycles; mesopelagic ecological and biogeochemical interactions; benthic-pelagic feedbacks on biogeochemical cycles; ocean carbon uptake and storage; and expanding low-oxygen conditions in the coastal and open oceans.