Pigments from HPLC analysis of bottle samples collected aboard Oceanus from R/V Oceanus OC404-01, OC404-04, OC415-01, OC415-03 in the Sargasso Sea from 2004-2005 (EDDIES project)

Website: https://www.bco-dmo.org/dataset/3024
Version: 01 November 2007
Version Date: 2007-11-01

Project
» Eddies Dynamics, Mixing, Export, and Species composition (EDDIES)

Program
» Ocean Carbon and Biogeochemistry (OCB)
ContributorsAffiliationRole
McGillicuddy, Dennis J.Woods Hole Oceanographic Institution (WHOI)Principal Investigator
Copley, NancyWoods Hole Oceanographic Institution (WHOI BCO-DMO)BCO-DMO Data Manager


Dataset Description

This dataset includes pigments from HPLC analysis of bottle samples collected during EDDIES project R/V Oceanus cruises OC404-01, OC404-04, OC415-01 and OC415-03 from the Sargasso Sea, June 11, 2004 to August 24, 2005.

Methodology: analytical protocols

Technician: Jason Perl (jperl@chors.sdsu.edu)
            Center for Hydro-Optics & Remote Sensing
            San Diego State University Research Foundation

   Change history: YYMMDD
     070525: downloaded original data from EDDIES data Web site
             (OC404-1: DM Pigs final 29Jul05.xls);
             (OC404-4: 200412c_DM.xls, 200501a_DM.xls, 200504a_DM.xls);
             (OC415-1: 200508b_DM-ori.xls, 200509c_DM.xls);
             (OC415-3: 200603 DM Final.xls)
             prepared for OCB database by Nancy Copley, BCO-DMO
     071101: added to OCB database by Cyndy Chandler, BCO-DMO
             event number is from cruise event log (added by DMO)

    PI note:
     080317: Recalibrated data are expected from NASA during the
             second half of 2008.


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Data Files

File
HPLC_OC.csv
(Comma Separated Values (.csv), 657.53 KB)
MD5:94472abc8ce4be3d5b65a9c9214e3033
Primary data file for dataset ID 3024

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Parameters

ParameterDescriptionUnits
Cruise_ID

cruise ID designation code

alphanumeric
event

unique sampling event number in YYYYMMDDhhmm format

unitless
date

date (GMT); start of sampling in YYYYMMDD format

unitless
time

time of measurement (GMT)

hhmm
lon

longitude at start of measurement; negative denotes West

decimal degrees
lat

latitude at start of measurement; negative denotes South

decimal degrees
sta

station number

dimensionless
depth_n

depth; nominal

meters
SID_HPLC

Sample ID, corresponds with bottle_SID

dimensionless
run_ID_HPLC

run ID assigned by HPLC lab

alphanumeric
run_PI

run ID for PI, various

alphanumeric
vol_filt_ml

volume water filtered for analysis

milliliters
chl_a_fluor

chlorophyll-a by Fluorometric methods

micrograms/liter
pheo_fluor

pheopigments by Fluorometric methods

micrograms/liter
chl_c3

HPLC Chlorophyll_c3

micrograms/liter
chl_c2

HPLC Chlorophyll_c2

micrograms/liter
chl_c1

HPLC Chlorophyll_c1

micrograms/liter
chlide_a

HPLC Chlorophyllide a

micrograms/liter
phide

HPLC Pheophorbide a

micrograms/liter
peridinin

HPLC Peridinin

micrograms/liter
fucox_but

HPLC 19' - Butanoyloxyfucoxanthin

micrograms/liter
fucox

HPLC fucoxanthin

micrograms/liter
neox

HPLC neoxanthin

micrograms/liter
prasinox

HPLC Prasinoxanthin

micrograms/liter
violax

HPLC violaxanthin

micrograms/liter
fucox_hex

HPLC 19' - Hexanoyloxyfucoxanthin

micrograms/liter
diadinox

HPLC Diadinoxanthin

micrograms/liter
allox

HPLC Alloxanthin

micrograms/liter
diatox

HPLC Diatoxanthin

micrograms/liter
zeax

HPLC Zeaxanthin

micrograms/liter
lutein

HPLC Lutein

micrograms/liter
gyro

HPLC Gyroxanthin-Diester

micrograms/liter
chl_b_dv

HPLC Divinyl_Chl_b

micrograms/liter
chl_b_mv

HPLC Monovinyl_Chl_b

micrograms/liter
chl_a_allomer

HPLC chlorophyll a allomer

micrograms/liter
chl_a_dv

Divinyl chlorophyll a; based on the C18 method regression between 436nm and 450nm

micrograms/liter
chl_a_mv_peak

HPLC Monovinyl_Chl_a, peak May contain some DVa

micrograms/liter
chl_a_epimer

HPLC chlorophyll a epimer

micrograms/liter
pheo

HPLC Pheophytin a

micrograms/liter
chl_b

HPLC Chlorophyll b

micrograms/liter
carotene_a

HPLC alpha Carotene

micrograms/liter
carotene_b

HPLC beta Carotene

micrograms/liter
carotene

HPLC Total Carotenes (alpha + beta)

micrograms/liter
chl_a_mv

Monovinyl chlorophyll a; based on the C18 method regression between 436nm and 450nm

micrograms/liter
chl_a_tot

Total Chlorophyll a =chlide_a +allomer +epimer +MVa +Dva

micrograms/liter
comments

comments and notes

dimensionless


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Instruments

Dataset-specific Instrument Name
Fluorometer
Generic Instrument Name
Fluorometer
Dataset-specific Description
Turner Fluorometer
Generic Instrument Description
A fluorometer or fluorimeter is a device used to measure parameters of fluorescence: its intensity and wavelength distribution of emission spectrum after excitation by a certain spectrum of light. The instrument is designed to measure the amount of stimulated electromagnetic radiation produced by pulses of electromagnetic radiation emitted into a water sample or in situ.

Dataset-specific Instrument Name
High Performance Liquid Chromatograph
Generic Instrument Name
High-Performance Liquid Chromatograph
Generic Instrument Description
A High-performance liquid chromatograph (HPLC) is a type of liquid chromatography used to separate compounds that are dissolved in solution. HPLC instruments consist of a reservoir of the mobile phase, a pump, an injector, a separation column, and a detector. Compounds are separated by high pressure pumping of the sample mixture onto a column packed with microspheres coated with the stationary phase. The different components in the mixture pass through the column at different rates due to differences in their partitioning behavior between the mobile liquid phase and the stationary phase.

Dataset-specific Instrument Name
Niskin Bottle
Generic Instrument Name
Niskin bottle
Generic Instrument Description
A Niskin bottle (a next generation water sampler based on the Nansen bottle) is a cylindrical, non-metallic water collection device with stoppers at both ends. The bottles can be attached individually on a hydrowire or deployed in 12, 24, or 36 bottle Rosette systems mounted on a frame and combined with a CTD. Niskin bottles are used to collect discrete water samples for a range of measurements including pigments, nutrients, plankton, etc.


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Deployments

OC404-01

Website
Platform
R/V Oceanus
Report
Start Date
2004-06-11
End Date
2004-07-03
Description
EDDIES 2004 Survey 1 cruise Funded by: NSF OCE-0241310 Original cruise data are available from the NSF R2R data catalog (Cruise DOI: 10.7284/900337)

OC404-04

Website
Platform
R/V Oceanus
Report
Start Date
2004-07-25
End Date
2004-08-12
Description
EDDIES project 2004 Survey 2 cruise Funded by: NSF OCE-0241310 Original cruise data are available from the NSF R2R data catalog

OC415-01

Website
Platform
R/V Oceanus
Report
Start Date
2005-06-20
End Date
2005-07-15
Description
EDDIES project 2005 Survey 1 cruise Funded by: NSF OCE-0241310 Original cruise data are available from the NSF R2R data catalog

OC415-03

Website
Platform
R/V Oceanus
Report
Start Date
2005-08-07
End Date
2005-08-26
Description
EDDIES project 2005 Survey 2 cruise Funded by: NSF OCE-0241310 Original cruise data are available from the NSF R2R data catalog


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Project Information

Eddies Dynamics, Mixing, Export, and Species composition (EDDIES)


Coverage: Sargasso Sea


The original title of this project from the NSF award is: Collaborative Research: Impacts of Eddies and Mixing on Plankton Community Structure and Biogeochemical Cycling in the Sargasso Sea".

Prior results have documented eddy-driven transport of nutrients into the euphotic zone and the associated accumulation of chlorophyll. However, several key aspects of mesoscale upwelling events remain unresolved by the extant database, including: (1) phytoplankton physiological response, (2) changes in community structure, (3) impact on export out of the euphotic zone, (4) rates of mixing between the surface mixed layer and the base of the euphotic zone, and (5) implications for biogeochemistry and differential cycling of carbon and associated bioactive elements. This leads to the following hypotheses concerning the complex, non-linear biological regulation of elemental cycling in the ocean:

H1: Eddy-induced upwelling, in combination with diapycnal mixing in the upper ocean, introduces new nutrients into the euphotic zone.

H2: The increase in inorganic nutrients stimulates a physiological response within the phytoplankton community.

H3: Differing physiological responses of the various species bring about a shift in community structure.

H4: Changes in community structure lead to increases in export from, and changes in biogeochemical cycling within, the upper ocean.

Publications

Andrews, J.E., Hartin, C., and Buesseler, K.O.. "7Be Analyses in Seawater by Low Background Gamma-Spectroscopy.," Journal of Radioanalytical and Nuclear Chemistry, v.277, 2008, p. 253.

Andrews, J.E., Hartin, C., Buesseler, K.O.. "7Be Analyses in Seawater by Low Background Gamma-Spectroscopy," Journal of Radioanalytical and Nuclear Chemistry, v.277, 2008, p. 253.

Benitez-Nelson, C.R. and McGillicuddy, D.J.. "Mesoscale Physical-Biological-Biogeochemical Linkages in the Open Ocean: An Introduction to the Results of the E-Flux and EDDIES Programs.," Deep Sea Research II, v.55, 2008, p. 1133.

Benitez-Nelson, C.R. and McGillicuddy, D.J.. "Mesoscale Physical-Biological-Biogeochemical Linkages in the Open Ocean: An Introduction to the Results of the E-Flux and EDDIES Programs," Deep-Sea Research II, v.55, 2008, p. 1133.

Bibby, T.S., Gorbunov, M.Y., Wyman, K.W., Falkowski, P.G.. "Photosynthetic community responses to upwelling in mesoscale eddies in the subtropical North Atlantic and Pacific Oceans," Deep-Sea Research Part II: Topical Studies in Oceanography, v.55, 2008, p. 1310.

Buesseler, K.O., Lamborg, C., Cai, P., Escoube, R., Johnson, R., Pike, S., Masque, P., McGillicuddy, D.J., Verdeny, E.. "Particle Fluxes Associated with Mesoscale Eddies in the Sargasso Sea," Deep Sea Research II, v.55, 2008, p. 1426.

Carlson, C.A., del Giorgio, P., Herdl, G.. "Microbes and the dissipation of energy and respiration: From cells to ecosystems," Oceanography, v.20, 2007, p. 89.

Davis, C.S., and McGillicuddy, D.J.. "Transatlantic Abundance of the N2-Fixing Colonial Cyanobacterium Trichodesmium," Science, v.312, 2006, p. 1517.

Ewart, C.S., Meyers, M.K., Wallner, E., McGillicuddy, D.J., Carlson, C.A.. "Microbial Dynamics in Cyclonic and Anticyclonic Mode-Water Eddies in the Northwestern Sargasso Sea," Deep Sea Research II, v.55, 2008, p. 1334.

Ewart, C.S., Meyers, M.K., Wallner, E., McGillicuddy, D.J., Carlson, C.A.. "Microbial Dynamics in Cyclonic and Anticyclonic Mode-Water Eddies in the Northwestern Sargasso Sea," Deep-Sea Research II, v.55, 2008, p. 1334.

Goldthwait, S.A. and Steinberg, D.K.. "Elevated biomass of mesozooplankton and enhanced fecal pellet flux in cyclonic and mode-water eddies in the Sargasso Sea," Deep-Sea Research Part II: Topical Studies in Oceanography, v.55, 2008, p. 1360.

Greenan, B.J.W.. "Shear and Richardson number in a mode-water eddy," Deep-Sea Research Part II: Topical Studies in Oceanography, v.55, 2008, p. 1161.

Jenkins, W.J., McGillicuddy, D.J., and Lott III, D.E.. "The Distributions of, and Relationship Between 3 He and Nitrate in Eddies," Deep Sea Research II, v.55, 2008, p. 1389.

Jenkins, W.J., McGillicuddy, D.J., Lott III, D.E.. "The Distributions of, and Relationship Between 3 He and Nitrate in Eddies," Deep-Sea Research II, v.55, 2008, p. 1389.

Ledwell, J.R., McGillicuddy, D.J., and Anderson, L.A.. "Nutrient Flux into an Intense Deep Chlorophyll Layer in a Mode-water Eddy.," Deep Sea Research II, v.55, 2008, p. 1139.

Ledwell, J.R., McGillicuddy, D.J., Anderson, L.A.. "Nutrient Flux into an Intense Deep Chlorophyll Layer in a Mode-water Eddy," Deep-Sea Research II, v.55, 2008, p. 1139.

Li, Q.P. and Hansell, D.A.. "Intercomparison and coupling of MAGIC and LWCC techniques for trace analysis of phosphate in seawater," Analytical Chemica Acta, v.611, 2008, p. 68.

Li, Q.P., Hansell, D.A., McGillicuddy, D.J., Bates, N.R., Johnson, R.J.. "Tracer-based assessment of the origin and biogeochemical transformation of a cyclonic eddy in the Sargasso Sea," Journal of Geophysical Research, v.113, 2008, p. 10006.

Li, Q.P., Hansell, D.A., Zhang, J.-Z.. "Underway monitoring of nanomolar nitrate plus nitrite and phosphate in oligotrophic seawater," Limnology and Oceanography: Methods, v.6, 2008, p. 319.

Li, Q.P., Zhang, J.-Z., Millero, F.J., Hansell, D.A.. "Continuous colorimetric determination of trace ammonium in seawater with a long-path liquid waveguide capillary cell," Marine Chemistry, v.96, 2005, p. 73.

McGillicuddy, D.J., et. al.. "Eddy/Wind Interactions Stimulate Extraordinary Mid-Ocean Plankton Blooms," Science, v.316, 2007, p. 1021.

McGillicuddy, D.J., Ledwell, J.R., and Anderson, L.A.. "Response to Comment on "Eddy/Wind Interactions Stimulate Extraordinary Mid-Ocean Plankton Bloom".," Science, v.320, 2008.

McGillicuddy, D.J., Ledwell, J.R., Anderson, L.A.. "Response to Comment on "Eddy/Wind Interactions Stimulate Extraordinary Mid-Ocean Plankton Bloom"," Science, v.320, 2008.

McGillicuddy, et. al.. "Eddy/Wind Interactions Stimulate Extraordinary Mid-Ocean Plankton Blooms.," Science, v.316, 2007, p. 1021.

Mourino B., and McGillicuddy, D.J.. "Mesoscale Variability in the Metabolic Balance of the Sargasso Sea," Limnology & Oceanography, v.51, 2006, p. 2675.



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Program Information

Ocean Carbon and Biogeochemistry (OCB)


Coverage: Global


The Ocean Carbon and Biogeochemistry (OCB) program focuses on the ocean's role as a component of the global Earth system, bringing together research in geochemistry, ocean physics, and ecology that inform on and advance our understanding of ocean biogeochemistry. The overall program goals are to promote, plan, and coordinate collaborative, multidisciplinary research opportunities within the U.S. research community and with international partners. Important OCB-related activities currently include: the Ocean Carbon and Climate Change (OCCC) and the North American Carbon Program (NACP); U.S. contributions to IMBER, SOLAS, CARBOOCEAN; and numerous U.S. single-investigator and medium-size research projects funded by U.S. federal agencies including NASA, NOAA, and NSF.

The scientific mission of OCB is to study the evolving role of the ocean in the global carbon cycle, in the face of environmental variability and change through studies of marine biogeochemical cycles and associated ecosystems.

The overarching OCB science themes include improved understanding and prediction of: 1) oceanic uptake and release of atmospheric CO2 and other greenhouse gases and 2) environmental sensitivities of biogeochemical cycles, marine ecosystems, and interactions between the two.

The OCB Research Priorities (updated January 2012) include: ocean acidification; terrestrial/coastal carbon fluxes and exchanges; climate sensitivities of and change in ecosystem structure and associated impacts on biogeochemical cycles; mesopelagic ecological and biogeochemical interactions; benthic-pelagic feedbacks on biogeochemical cycles; ocean carbon uptake and storage; and expanding low-oxygen conditions in the coastal and open oceans.



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