Nutrients and CTD data in Southeastern Alaska from R/V John N. Cobb multiple cruises in the Coastal Southeast Alaska from 1999-2005 (NEP project)

Website: https://www.bco-dmo.org/dataset/3307
Version: 2010-02-24

Project
» U.S. GLOBEC Northeast Pacific (NEP)

Program
» U.S. GLOBal ocean ECosystems dynamics (U.S. GLOBEC)
ContributorsAffiliationRole
Fergusson, Emily A.National Oceanic and Atmospheric Administration - Alaska Fisheries Science Center (NOAA-AFSC-Auke)Co-Chief Scientist, Data Manager
Orsi, Joseph ANational Oceanic and Atmospheric Administration - Alaska Fisheries Science Center (NOAA-AFSC-Auke)Co-Chief Scientist, Lead Principal Investigator
Sturdevant, Molly V.National Oceanic and Atmospheric Administration - Alaska Fisheries Science Center (NOAA-AFSC-Auke)Co-Chief Scientist
Wertheimer, Alex C.National Oceanic and Atmospheric Administration - Alaska Fisheries Science Center (NOAA-AFSC-Auke)Lead Principal Investigator
Copley, NancyWoods Hole Oceanographic Institution (WHOI BCO-DMO)BCO-DMO Data Manager


Dataset Description

Note: This dataset is identical to SECM_nutrients_all, however, this version is configured so that the data are mapped as individual points (one per cruise) in the MapServer interface. See SECM_nutrients_all to map the data as a time series by station.

Nutrient data collected in conjunction with juvenile salmon studies in the Gulf of Alaska from 1999-2005 by the Southeast Coastal Monitoring Project. Measurements include settling volume, displacement volume, composition of taxa.


Methods & Sampling

The CTD data were collected with a Sea-Bird1 SBE 19 Seacat profiler to 200 m or within 10 m of the bottom. Surface (3-m) temperature and salinity data were collected at 1-minute intervals with an onboard thermosalinograph (Sea-Bird SBE 21).

Surface (bucket) and 20-m (Niskin bottle) water samples were taken once at each station for later nutrient and chlorophyll analysis.

To quantify ambient light levels, light intensities (W * m-2) were recorded at each station with a Li-Cor Model 189 radiometer.

To quantify relative water clarity, the CTD was used in lieu of a Secchi disk; depth measurements (m) were made by observing the visual disappearance of the CTD following deployment.

One shallow vertical haul (20-m) was made at each station (except three at ABM) with a 50-cm, 243-micron mesh NORPAC net.

One deep vertical haul (to 200 m or within 10 m of bottom) was made at ABM and the Icy Point stations with a 57-cm, 202-micron mesh WP-2 net.

One double oblique bongo haul was made at stations along the Icy Strait and Lower Clarence Strait transects and at ABM to a depth of 200 m or within 20 m of the bottom, using a 60-cm diameter tandem frame with 505-micron and 333-micron mesh nets. A VEMCO ML-08-TDR time-depth recorder was used with the oblique bongo hauls to record the maximum sampling depth of each haul. General Oceanics model 2031 or Rigosha flow meters were placed inside the bongo and deep conical nets for calculation of filtered water volumes.

Also see related SECM datasets:
station data
ctd
zooplankton
fish catch data
fish length and stomach contents

Station Codes:

station locality
ABM Auke Bay Monitor
CS A-D Cross Sound
ED A-D Cape Edward
FPR False Point Retreat
IP A-D Icy Point
IS A-D Icy Strait
LC A-D Lower Clarence
LFC Lower Favorite Channel
MC A-D Middle Clarence
TK G-I Taku Inlet transect
UC A-D Upper Chatham Strait

 


Data Processing Description

Surface water samples were taken at each station for later nutrient and chlorophyll analysis contracted to the Marine Chemistry Laboratory at the University of Washington School of Oceanography.

Use constraints: User must read and fully comprehend the metadata prior to use. User must acknowledge the Originator when using the data set as a souce. User must share data products developed using the source data set with the Originator. Data should not be used beyond the limits of the source scale.


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Data Files

File
secm_nuts.csv
(Comma Separated Values (.csv), 61.59 KB)
MD5:47a593a91cfd02bf8b4e91302f646371
Primary data file for dataset ID 3307

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Parameters

ParameterDescriptionUnits
chl_a

chlorophyll

mg/m3
day_local

day of month

integer
depth_ctd

CTD wire out

meters
depth_nuts

depth that nutrients water sample was taken normally @ surface (0m); 2005 has 20m samples

meters
depth_secchi

depth that CTD disappears

meters
depth_w

water depth

meters
haul_id

haul number

integer
lat_haul

latitude at start of haul; North is positive; negative denotes South

decimal degrees
lat

latitude for station; North is positive; negative denotes South

decimal degrees
light

light level at surface

watts/meter square
lon_haul

longitude at start of haul; East is positive; negative denotes West

decimal degrees
lon

longitude at station; East is positive; negative denotes West

decimal degrees
month_local

month of year

1-12
NH4

ammonium

nd
NO2

nitrites

nd
NO3

nitrates

nd
phaeo

phaeopigment

mg/m3
PO4

phosphates

nd
region

Northern (NSE) or Southern SE Alaska (SSE).

text
sal

salinity at 3 m depth

parts per thousand
SiO4

silicate; Si(OH)4

nd
station

station code; see table above

text
temp

temperature at 3 m depth

degrees Celsius
time_local

time of day; local time; using 2400 clock format

HHmm
year

year of sampling

YYYY
yrday_local

local day and decimal time; as 326.5 for the 326th day of the year; or November 22 at 1200 hours (noon)

jjj.ddd
cruise_id

cruise identification: jc=John Cobb; next two numbers = year; last 2 numbers = cruise # ('x' means cruise # is not known)

text


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Instruments

Dataset-specific Instrument Name
Niskin Bottle
Generic Instrument Name
Niskin bottle
Generic Instrument Description
A Niskin bottle (a next generation water sampler based on the Nansen bottle) is a cylindrical, non-metallic water collection device with stoppers at both ends. The bottles can be attached individually on a hydrowire or deployed in 12, 24, or 36 bottle Rosette systems mounted on a frame and combined with a CTD. Niskin bottles are used to collect discrete water samples for a range of measurements including pigments, nutrients, plankton, etc.


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Deployments

jc0005

Website
Platform
R/V John N. Cobb
Report
Start Date
2000-05-19
End Date
2000-05-25
Description
Southeast Alaska Coastal Monitoring (SECM) cruise

jc0009

Website
Platform
R/V John N. Cobb
Report
Start Date
2000-06-26
End Date
2000-07-02
Description
Southeast Alaska Coastal Monitoring (SECM) cruise

jc0012

Website
Platform
R/V John N. Cobb
Report
Start Date
2000-07-19
End Date
2000-07-25
Description
Southeast Alaska Coastal Monitoring (SECM) cruise

jc0016

Website
Platform
R/V John N. Cobb
Report
Start Date
2000-08-25
End Date
2000-08-31
Description
Southeast Alaska Coastal Monitoring (SECM) cruise

jc0018

Website
Platform
R/V John N. Cobb
Report
Start Date
2000-09-25
End Date
2000-10-01
Description
Southeast Alaska Coastal Monitoring (SECM) cruise

jc0105

Website
Platform
R/V John N. Cobb
Report
Start Date
2001-05-19
End Date
2001-05-25
Description
Southeast Alaska Coastal Monitoring (SECM) cruise

jc0109

Website
Platform
R/V John N. Cobb
Report
Start Date
2001-06-26
End Date
2001-07-02
Description
Southeast Alaska Coastal Monitoring (SECM) cruise

jc0113

Website
Platform
R/V John N. Cobb
Report
Start Date
2001-07-27
End Date
2001-08-02
Description
Southeast Alaska Coastal Monitoring (SECM) cruise

jc0116

Website
Platform
R/V John N. Cobb
Report
Start Date
2001-08-26
End Date
2001-09-01
Description
Southeast Alaska Coastal Monitoring (SECM) cruise

jc0118

Website
Platform
R/V John N. Cobb
Report
Start Date
2001-09-26
End Date
2001-10-02
Description
Southeast Alaska Coastal Monitoring (SECM) cruise

jc0205

Website
Platform
R/V John N. Cobb
Report
Start Date
2002-05-21
End Date
2002-05-24
Description
Southeast Alaska Coastal Monitoring (SECM) cruise

jc0209

Website
Platform
R/V John N. Cobb
Report
Start Date
2002-06-22
End Date
2002-06-27
Description
Southeast Alaska Coastal Monitoring (SECM) cruise

jc0213

Website
Platform
R/V John N. Cobb
Report
Start Date
2002-07-23
End Date
2002-07-31
Description
Southeast Alaska Coastal Monitoring (SECM) cruise

jc0216

Website
Platform
R/V John N. Cobb
Report
Start Date
2002-08-23
End Date
2002-08-30
Description
Southeast Alaska Coastal Monitoring (SECM) cruise

jc0302

Website
Platform
R/V John N. Cobb
Report
Start Date
2003-05-20
End Date
2003-05-25
Description
Southeast Alaska Coastal Monitoring (SECM) cruise

jc0305

Website
Platform
R/V John N. Cobb
Report
Start Date
2003-06-21
End Date
2003-06-30
Description
Southeast Alaska Coastal Monitoring (SECM) cruise

jc0308

Website
Platform
R/V John N. Cobb
Report
Start Date
2003-07-22
End Date
2003-07-29
Description
Southeast Alaska Coastal Monitoring (SECM) cruise

jc0312

Website
Platform
R/V John N. Cobb
Report
Start Date
2003-08-21
End Date
2003-08-27
Description
Southeast Alaska Coastal Monitoring (SECM) cruise

jc0406

Website
Platform
R/V John N. Cobb
Report
Start Date
2004-05-18
End Date
2004-05-23
Description
Southeast Alaska Coastal Monitoring (SECM) cruise

jc0408

Website
Platform
R/V John N. Cobb
Report
Start Date
2004-06-20
End Date
2004-06-28
Description
Southeast Alaska Coastal Monitoring (SECM) cruise

jc0411

Website
Platform
R/V John N. Cobb
Report
Start Date
2004-07-23
End Date
2004-07-31
Description
Southeast Alaska Coastal Monitoring (SECM) cruise

jc0414

Website
Platform
R/V John N. Cobb
Report
Start Date
2004-08-21
End Date
2004-08-28
Description
Southeast Alaska Coastal Monitoring (SECM) cruise

jc0506

Website
Platform
R/V John N. Cobb
Report
Start Date
2005-05-22
End Date
2005-05-25
Description
Southeast Alaska Coastal Monitoring (SECM) cruise

jc0508

Website
Platform
R/V John N. Cobb
Report
Start Date
2005-06-20
End Date
2005-07-03
Description
Southeast Alaska Coastal Monitoring (SECM) cruise

jc0510

Website
Platform
R/V John N. Cobb
Report
Start Date
2005-07-20
End Date
2005-08-01
Description
Southeast Alaska Coastal Monitoring (SECM) cruise

jc0512

Website
Platform
R/V John N. Cobb
Report
Start Date
2005-08-23
End Date
2005-08-29
Description
Southeast Alaska Coastal Monitoring (SECM) cruise

jc9906

Website
Platform
R/V John N. Cobb
Report
Start Date
1999-05-20
End Date
1999-05-25
Description
Southeast Alaska Coastal Monitoring (SECM) cruise

jc9909

Website
Platform
R/V John N. Cobb
Report
Start Date
1999-06-26
End Date
1999-07-01
Description
Southeast Alaska Coastal Monitoring (SECM) cruise

jc9912

Website
Platform
R/V John N. Cobb
Report
Start Date
1999-07-24
End Date
1999-07-30
Description
Southeast Alaska Coastal Monitoring (SECM) cruise

jc9915

Website
Platform
R/V John N. Cobb
Report
Start Date
1999-08-20
End Date
1999-08-26
Description
Southeast Alaska Coastal Monitoring (SECM) cruise

jc9918

Website
Platform
R/V John N. Cobb
Report
Start Date
1999-09-26
End Date
1999-10-02
Description
Southeast Alaska Coastal Monitoring (SECM) cruise

jc0304b

Website
Platform
R/V John N. Cobb
Report
Start Date
2003-06-12
End Date
2003-06-15
Description
Southeast Alaska Coastal Monitoring (SECM) cruise


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Project Information

U.S. GLOBEC Northeast Pacific (NEP)


Coverage: Northeast Pacific Ocean, Gulf of Alaska


Program in a Nutshell

Goal: To understand the effects of climate variability and climate change on the distribution, abundance and production of marine animals (including commercially important living marine resources) in the eastern North Pacific. To embody this understanding in diagnostic and prognostic ecosystem models, capable of capturing the ecosystem response to major climatic fluctuations.

Approach: To study the effects of past and present climate variability on the population ecology and population dynamics of marine biota and living marine resources, and to use this information as a proxy for how the ecosystems of the eastern North Pacific may respond to future global climate change. The strong temporal variability in the physical and biological signals of the NEP will be used to examine the biophysical mechanisms through which zooplankton and salmon populations respond to physical forcing and biological interactions in the coastal regions of the two gyres. Annual and interannual variability will be studied directly through long-term observations and detailed process studies; variability at longer time scales will be examined through retrospective analysis of directly measured and proxy data. Coupled biophysical models of the ecosystems of these regions will be developed and tested using the process studies and data collected from the long-term observation programs, then further tested and improved by hindcasting selected retrospective data series.



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Program Information

U.S. GLOBal ocean ECosystems dynamics (U.S. GLOBEC)


Coverage: Global


U.S. GLOBEC (GLOBal ocean ECosystems dynamics) is a research program organized by oceanographers and fisheries scientists to address the question of how global climate change may affect the abundance and production of animals in the sea.

The U.S. GLOBEC Program currently had major research efforts underway in the Georges Bank / Northwest Atlantic Region, and the Northeast Pacific (with components in the California Current and in the Coastal Gulf of Alaska). U.S. GLOBEC was a major contributor to International GLOBEC efforts in the Southern Ocean and Western Antarctic Peninsula (WAP).



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Funding

Funding SourceAward
National Oceanic and Atmospheric Administration (NOAA)
National Science Foundation (NSF)

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