Microbial counts, Eukaryotes from the R/V Melville IronEx II cruise in the Equatorial Pacific Ocean in 1995 (IronEx II project)

Website: https://www.bco-dmo.org/dataset/3445
Version: 10 March 2011
Version Date: 2011-03-10

Project
» Iron Experiment II (IronExII)

Program
» Iron Synthesis (FeSynth)
ContributorsAffiliationRole
Coale, Kenneth H.Moss Landing Marine Laboratories (MLML)Principal Investigator
Johnson, KenMoss Landing Marine Laboratories (MLML)Co-Principal Investigator
Armstrong, EvelynUniversity of OtagoContact
Gegg, Stephen R.Woods Hole Oceanographic Institution (WHOI BCO-DMO)BCO-DMO Data Manager


Dataset Description

Microbial counts - Eukaryote
 
Data were normalized with the following values:
#  values used for normalizing from "out" by group
#  group    fals(rel)   redFL(rel)   FL/fals ratio
#  group1   0.45        0.64         1.58
#  group2   2.55        9.01         3.57
#  group3   0.33        7.94         27.74
#  group4   nd          nd           nd
#

Data Processing Description

BCO-DMO Processing Notes
Prepared by WHOI OCB-DMO from original multi sheet file :FeEx2_summary01-(c).xls contributed by Doug Mackie
Sheets "euk data", IN (euk), OUT (euk), IN (euk-norm), OUT (euk_norm) used to prepare this dataset.

Changes made to original file:
- Data from the 5 individual sheets combined into one
- Parameter names extensively edited/modified to conform to BCO-DMO convention
- date manually inserted from Cast Log

- HHMM time calculated from supplied decimal hours
 

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Data Files

File
Microbial_Euk.csv
(Comma Separated Values (.csv), 19.88 KB)
MD5:b8c40dde838878c876a458da48203081
Primary data file for dataset ID 3445

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Parameters

ParameterDescriptionUnits
filename

filename

text
description

description

text
cruise

cruise

text
experiment

experiment

text
date

date (GMT)

yyyymmdd
time

time (GMT)

hhmm
time_decimal

time decimal (GMT)

decimal hours
yrday

yrday

integer
lon

Longitude (West is negative)

decimal degrees
lat

Latitude (South is negative)

decimal degrees
cast

cast

integer
depth

depth

meters
Patch

Location relative to the Patch

text
experiment_day

experiment day

integer
time_of_day

time of day relative to daylight

text
beads_to_Fals

beads to Fals

ratio
redFL

redFL

(tbd)
group1_name

group1 name

text
group1_conc

group1 conc

cells/ml
group1_conc_mean

group1 conc mean

cells/ml
group1_conc_stddev

group1 conc stddev

cells/ml
group1_fals

group1 fals

relative
group1_redFL

group1 redFL

relative
group1_redFL_to_fals_ratio

group1 redFL to fals ratio

ratio
group1_fals_norm

group1 fals norm

(tbd)
group1_fals_norm_mean

group1 fals norm mean

(tbd)
group1_fals_norm_stddev

group1 fals norm stddev

(tbd)
group1_redFL_norm

group1 redFL norm

(tbd)
group1_redFL_norm_mean

group1 redFL norm mean

(tbd)
group1_redFL_norm_stddev

group1 redFL norm stddev

(tbd)
group1_redFL_norm_to_fals_norm_ratio

group1 redFL norm to fals norm ratio

ratio
group1_redFL_norm_to_fals_norm_ratio_mean

group1 redFL norm to fals norm ratio mean

(tbd)
group1_redFL_norm_to_fals_norm_ratio_stddev

group1 redFL norm to fals norm ratio stddev

(tbd)
group2_name

group2 name

text
group2_conc

group2 conc

cells/ml
group2_conc_mean

group2 conc mean

cells/ml
group2_conc_stddev

group2 conc stddev

cells/ml
group2_fals

group2 fals

relative
group2_redFL

group2 redFL

relative
group2_redFL_to_fals_ratio

group2 redFL to fals ratio

ratio
group2_fals_norm

group2 fals norm

(tbd)
group2_fals_norm_mean

group2 fals norm mean

(tbd)
group2_fals_norm_stddev

group2 fals norm stddev

(tbd)
group2_redFL_norm

group2 redFL norm

(tbd)
group2_redFL_norm_mean

group2 redFL norm mean

(tbd)
group2_redFL_norm_stddev

group2 redFL norm stddev

(tbd)
group2_redFL_norm_to_fals_norm_ratio

group2 redFL norm to fals norm ratio

(tbd)
group2_redFL_norm_to_fals_norm_ratio_mean

group2 redFL norm to fals norm ratio mean

(tbd)
group2_redFL_norm_to_fals_norm_ratio_stddev

group2 redFL norm to fals norm ratio stddev

(tbd)
group3_name

group3 name

text
group3_conc

group3 conc

cells/ml
group3_conc_mean

group3 conc mean

cells/ml
group3_conc_stddev

group3 conc stddev

cells/ml
group3_fals

group3 fals

relative
group3_redFL

group3 redFL

relative
group3_redFL_to_fals_ratio

group3 redFL to fals ratio

ratio
group3_fals_norm

group3 fals norm

(tbd)
group3_fals_norm_mean

group3 fals norm mean

(tbd)
group3_fals_norm_stddev

group3 fals norm stddev

(tbd)
group3_redFL_norm

group3 redFL norm

(tbd)
group3_redFL_norm_mean

group3 redFL norm mean

(tbd)
group3_redFL_norm_stddev

group3 redFL norm stddev

(tbd)
group3_redFL_norm_to_fals_norm_ratio

group3 redFL norm to fals norm ratio

(tbd)
group3_redFL_norm_to_fals_norm_ratio_mean

group3 redFL norm to fals norm ratio mean

(tbd)
group3_redFL_norm_to_fals_norm_ratio_stddev

group3 redFL norm to fals norm ratio stddev

(tbd)
group4_name

group4 name

text
group4_conc

group4 conc

cells/ml
group4_conc_mean

group4 conc mean

cells/ml
group4_conc_stddev

group4 conc stddev

cells/ml
group4_fals

group4 fals

relative
group4_reducedred

group4 reducedred

relative to red
group4_redFL_to_fals_ratio

group4 redFL to fals ratio

ratio
group4_fals_norm

group4 fals norm

(tbd)
group4_fals_norm_mean

group4 fals norm mean

(tbd)
group4_fals_norm_stddev

group4 fals norm stddev

(tbd)
group4_redFL_norm

group4 redFL norm

(tbd)
group4_redFL_norm_mean

group4 redFL norm mean

(tbd)
group4_redFL_norm_stddev

group4 redFL norm stddev

(tbd)
group4_redFL_norm_to_fals_norm_ratio

group4 redFL norm to fals norm ratio

(tbd)
group4_redFL_norm_to_fals_norm_ratio_mean

group4 redFL norm to fals norm ratio mean

(tbd)
group4_redFL_norm_to_fals_norm_ratio_stddev

group4 redFL norm to fals norm ratio stddev

(tbd)


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Instruments

Dataset-specific Instrument Name
CTD profiler
Generic Instrument Name
CTD - profiler
Generic Instrument Description
The Conductivity, Temperature, Depth (CTD) unit is an integrated instrument package designed to measure the conductivity, temperature, and pressure (depth) of the water column. The instrument is lowered via cable through the water column. It permits scientists to observe the physical properties in real-time via a conducting cable, which is typically connected to a CTD to a deck unit and computer on a ship. The CTD is often configured with additional optional sensors including fluorometers, transmissometers and/or radiometers. It is often combined with a Rosette of water sampling bottles (e.g. Niskin, GO-FLO) for collecting discrete water samples during the cast. This term applies to profiling CTDs. For fixed CTDs, see https://www.bco-dmo.org/instrument/869934.


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Deployments

IronExII_MV

Website
Platform
R/V Melville
Start Date
1995-05-13
End Date
1995-06-21
Description
Cruise Summary: 5/14/95 Depart Papeete, Tahiti 5/14/95 to 5/23/95 Transit & Test stations 5/23/95 to 5/29/95 Survey for Fe release 5/29/95 to 5/30/95 Fe release #1 5/30/95 to 6/1/95 In & out sampling 6/1/95 to 6/1/95 Fe release #2 6/1/95 to 6/5/95 In & out sampling 6/5/95 to 6/5/95 Fe release #3 6/6/95 to 6/8/95 In & out sampling 6/8/95 to 6/9/95 Control patch (SF6 only), 2nd Fe patch release (0.4 nM Fe) 6/9/95 to 6/15/95 In & out sampling of all 3 patches 6/15/95 to 6/21/95 Transit to Acapulco, Mexico


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Project Information

Iron Experiment II (IronExII)

Coverage: Equatorial Pacific Ocean


One of two (see IronEx I Oct/Nov 1993) small scale iron fertilization experiments conducted
in the Equatorial Pacific Ocean.

Summary:

5/14/95 Depart Papeete, Tahiti

5/14/95 to 5/23/95 Transit & Test stations

5/23/95 to 5/29/95 Survey for Fe release

5/29/95 to 5/30/95 Fe release #1

5/30/95 to 6/1/95 In & out sampling

6/1/95 to 6/1/95 Fe release #2

6/1/95 to 6/5/95 In & out sampling

6/5/95 to 6/5/95 Fe release #3

6/6/95 to 6/8/95 In & out sampling

6/8/95 to 6/9/95 Control patch (SF6 only), 2nd Fe patch release (0.4 nM Fe)

6/9/95 to 6/15/95 In & out sampling of all 3 patches

6/15/95 to 6/21/95 Transit to Acapulco, Mexico



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Program Information

Iron Synthesis (FeSynth)

Coverage: Global


The two main objectives of the Iron Synthesis program (SCOR Working Group proposal, 2005), are:
1. Data compilation: assembling a common open-access database of the in situ iron experiments, beginning with the first period (1993-2002; Ironex-1, Ironex-2, SOIREE, EisenEx, SEEDS-1; SOFeX, SERIES) where primary articles have already been published, to be followed by the 2004 experiments where primary articles are now in progress (EIFEX, SEEDS-2; SAGE, FeeP); similarly for the natural fertilizations S.O.JGOFS (1992), CROZEX (2004/2005) and KEOPS (2005).

2. Modeling and data synthesis of specific aspects of two or more such experiments for various topics such as physical mixing, phytoplankton productivity, overall ecosystem functioning, iron chemistry, CO2 budgeting, nutrient uptake ratios, DMS(P) processes, and combinations of these variables and processes.

SCOR Working Group proposal, 2005. "The Legacy of in situ Iron Enrichments: Data Compilation and Modeling".
http://www.scor-int.org/Working_Groups/wg131.htm

See also: SCOR Proceedings Vol. 42 Concepcion, Chile October 2006, pgs: 13-16 2.3.3 Working Group on The Legacy of in situ Iron Enrichments: Data Compilation and Modeling.

The first objective of the Iron Synthesis program involves a data recovery effort aimed at assembling a common, open-access database of data and metadata from a series of in-situ ocean iron fertilization experiments conducted between 1993 and 2005. Initially, funding for this effort is being provided by the Scientific Committee on Oceanic Research (SCOR) and the U.S. National Science Foundation (NSF).

Through the combined efforts of the principal investigators of the individual projects and the staff of Biological and Chemical Oceanography Data Management Office (BCO-DMO), data currently available primarily through individuals, disparate reports and data agencies, and in multiple formats, are being collected and prepared for addition to the BCO-DMO database from which they will be freely available to the community.

As data are contributed to the BCO-DMO office, they are organized into four overlapping categories:
1. Level 1, basic metadata
(e.g., description of project/study, general location, PI(s), participants);
2. Level 2, detailed metadata and basic shipboard data and routine ship's operations
(e.g., CTDs, underway measurements, sampling event logs);
3. Level 3, detailed metadata and data from specialized observations
(e.g., discrete observations, experimental results, rate measurements) and
4. Level 4, remaining datasets
(e.g., highest level of detailed data available from each study).

Collaboration with BCO-DMO staff began in March of 2008 and initial efforts have been directed toward basic project descriptions, levels 1 and 2 metadata and basic data, with detailed and more detailed data files being incorporated as they become available and are processed.

Related file

Program Documentation

The Iron Synthesis Program is funded jointly by the Scientific Committee on Oceanic Research (SCOR) and the U.S. National Science Foundation (NSF).



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Funding

Funding SourceAward
NSF Division of Ocean Sciences (NSF OCE)
Office of Naval Research (ONR)

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