Profile data products from R/V Atlantic Explorer and R/V Cape Hatteras multiple cruises in the Sargasso Sea, Bermuda Atlantic Time Series (BATS) area, and Hydrostation "S" from 2007 to 2008 (ON DEQUE project)

Website: https://www.bco-dmo.org/dataset/3527
Version: 22 August 2011
Version Date: 2011-07-22

Project
» Optical and Nutrient Dependence of Quantum Efficiency (ON DEQUE)

Program
» Ocean Carbon and Biogeochemistry (OCB)
ContributorsAffiliationRole
Vaillancourt, Robert D.Millersville UniversityPrincipal Investigator, Contact
Marra, John F.Brooklyn College (CUNY Brooklyn)Co-Principal Investigator
Gegg, Stephen R.Woods Hole Oceanographic Institution (WHOI BCO-DMO)BCO-DMO Data Manager


Dataset Description

Database Profile Data Products
 

Methods & Sampling

(tbd)
 

Data Processing Description

BCO-DMO Processing Notes
Generated from original .xlsx file "ONDEQUE Database_v1.0.xlsx", Sheet: "Profile Data Products" contributed by Robert Vallancourt

BCO-DMO Edits

 - Column inserted for Date_UTC to go along with Time_UTC
 - "nd" (no data) value inserted in blank cells
 - Parameter names modified to conform to BCO-DMO convention  
 

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Data Files

File
Database_ProfileProds.csv
(Comma Separated Values (.csv), 265.54 KB)
MD5:c620ea773b44a8fc766eccabd8a46fc7
Primary data file for dataset ID 3527

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Parameters

ParameterDescriptionUnits
ProjectId

ID Info; Project

text
CruiseId

ID Info; Cruise Name

text
StationId

ID Info; On Deque station ID

integer
CastId

ID Info; CAST ID

text
Location_Description

ID Info; Location Description

text
Year

ID Info; Year

YYYY
Month

ID Info; Gregorian Month

text
Day_of_Month

ID Info; Day of Gregorian Month

DD
Day_of_Year

ID Info; Sequential Day of Year (whole days 1 = 1 Jan)

DDD
Date_UTC

ID Info; UTC Date

YYYYMMDD
Time_UTC

ID Info; UTC Time

HHMM
Date_Local

ID Info; Local Date

YYYYMMDD
Time_Local

ID Info; Local Time

HHMM
Lon

ID Info; Longitude (deg E)

decimal degrees
Lat

ID Info; Latitude (deg N)

decimal degrees
Depth

ID Info; Depth (meters)

meters
Optical_Depth

Optical Depth [lnPAR0-/PARz)

[lnPAR0-/PARz)
Time_UTC_CTD

CTD Info; UTC Time

HHMMSS
Pressure

CTD Info; Pressure [db]

decibars
Depth_CTD_a

CTD Info; Depth [m]

meters
Potential_Temp

CTD Info; Potential Temperature (T090) [deg C]

degrees C
Temperature

CTD Info; Temperature (T090) [deg C]

degrees C
Conductivity

CTD Info; Conductivity [S m-1]

S m-1
Salinity

CTD Info; Salinity [psu]

psu
Density

CTD Info; Density [Kg m-3]

Kg m-3
Density_sigma_t

CTD Info; Density sigma t [Kg m-3]

Kg m-3
Beam_Attenuation

CTD Info; Beam Attenuation [m-1]

[m-1
Beam_Transmissivity

CTD Info; Beam Transmissivity [%]

percentage
Fluorescence_Chelsea

CTD Info; Fluorescence; Chelsea [mg m-3]

mg m-3
PAR_Irradiance

CTD Info; PAR/Irradiance;

mol quanta/m^2(??)
Fluorometric_Chl_extracted

Fl-Chl; Fluorometric Chl (extracted) (mg m-3)

mg m-3
Depth_Nominal

Nuts; Nominal Depth (m)

meters
Depth_CTD_b

CTD Info; Depth [m]

meters
PO4_minus_P

Nuts; PO4-P (ug at P L-1)

ug at P L-1
NO2_plus_NO3_minus_N

Nuts; NO2+NO3-N (ug at N L-1)

ug at N L-1
Silicate_minus_Si

Nuts; Silicate-Si (ug at Si L-1) ALL BELOW DETECTION LIMITS OF 2.86

ug at Si L-1
Depth_Nominal_PP

IS PP; Nominal PP Depth [m]

meters
PP_Sample_Number

IS PP; PP Sample #

integer
Primary_Productivity_12hour

IS PP; Primary PRoductivity by 12hour In-situ Incubation [mg C m-3 12h-1]

mg C m-3 12h-1
Primary_Productivity_24hour

IS PP; Primary PRoductivity by 24hour In-situ Incubation [mg C m-3 12h-1]

mg C m-3 12h-1
Daily_PAR_Irradiance_Surface

Daily Surface PAR Irradiance (Hargreave's LiCor) [mol quanta/m^2]

mol quanta/m^2
Daily_PAR_Irradiance_Depth_Z

Daily PAR Irradiance at depth z (Hargreave's LiCor) [mol quanta/m^2]

mol quanta/m^2
Ap_440

Ap; Ap-440 [m-1]

m-1
Ap_675

Ap; Ap-675 [m-1]

m-1
mean_Ap

Ap; mean Ap [m-1]

m-1
Ad_440

Ap; Ad-440 [m-1]

m-1
Ad_675

Ap; Ad-675 [m-1]

m-1
mean_Ad

Ap; mean Ad [m-1]

m-1
Aph_440

Ap; Aph-440 [m-1]

m-1
Aph_675

Ap; Aph-675 [m-1]

m-1
mean_Aph

Ap; mean Aph [m-1]

m-1
spec_wtd_aph_rt_tron

Ap; spec-wtd aph [1/m] (spec-wtd to spectrum of rp-tron bulb)

1/m
spec_wtd_aph_in_situ

Ap; spec-wtd aph [1/m] (spec-wtd to in-situ spectrum)

1/m
spec_wtd_appc

spec-wtd appc [1/m] (spec-wtd to in-situ spectrum)

1/m
appc_to_aph

appc/aph (%)

percentage
spec_wtd_apsp

spec-wtd apsp [1/m] (spec-wtd to in-situ spectrum)

1/m
Prochlorococcus

FCM; Prochlorococcus (cells ml-1 SW)

cells ml-1 SW
Synechococcus

FCM; Synechococcus (cells ml-1 SW)

cells ml-1 SW
Picoeukaryotes_total

FCM; Picoeukaryotes (total) (cells ml-1 SW)

cells ml-1 SW
Nanoeukaryotes

FCM; Nanoeukaryotes (cells ml-1 SW)

cells ml-1 SW
TChl_a

HPLC; [TChl a] (mg/m^3)

mg/m^3
Tchl_b

HPLC; [TChl b](mg/m^3)

mg/m^3
TChl_c

HPLC; [TChl c] (mg/m^3)

mg/m^3
Caro

HPLC; [Caro] (mg/m^3)

mg/m^3
But_fuco

HPLC; [But fuco] (mg/m^3)

mg/m^3
Hex_fuco

HPLC; [Hex fuco] (mg/m^3)

mg/m^3
Allo

HPLC; [Allo] (mg/m^3)

mg/m^3
Diad

HPLC; [Diad] (mg/m^3)

mg/m^3
Diato

HPLC; [Diato] (mg/m^3)

mg/m^3
Fuco

HPLC; [Fuco] (mg/m^3)

mg/m^3
Perid

HPLC; [Perid] (mg/m^3)

mg/m^3
Zea

HPLC; [Zea] (mg/m^3)

mg/m^3
Chl_a

HPLC; [Chl a] (mg/m^3)

mg/m^3
DVChl_a

HPLC; [DVChl a] (mg/m^3)

mg/m^3
Chlide_a

HPLC; [Chlide a] (mg/m^3)

mg/m^3
Chl_b

HPLC; [Chl b] (mg/m^3)

mg/m^3
DVChl_b

HPLC; [DVChl b] (mg/m^3)

mg/m^3
Chl_c1

HPLC; Chl c1 (mg/m^3)

mg/m^3
Chl_c2

HPLC; Chl c2 (mg/m^3)

mg/m^3
Chl_c12

HPLC; [Chl c12] (mg/m^3)

mg/m^3
Chl_c3

HPLC; [Chl c3] (mg/m^3)

mg/m^3
Lut

HPLC; [Lut] (mg/m^3)

mg/m^3
Neo

HPLC; [Neo] (mg/m^3)

mg/m^3
Viola

HPLC; [Viola] (mg/m^3)

mg/m^3
Phytin_a

HPLC; [Phytin a] (mg/m^3)

mg/m^3
Phide_a

HPLC; [Phide a] (mg/m^3)

mg/m^3
Pras

HPLC; [Pras] (mg/m^3)

mg/m^3
Gyr_diester

HPLC; [Gyr diester] (mg/m^3)

mg/m^3
TChl

HPLC; [TChl] (mg/m^3)

mg/m^3
PPC

HPLC; [PPC] (mg/m^3)

mg/m^3
PSC

HPLC; [PSC] (mg/m^3)

mg/m^3
PSP

HPLC; [PSP] (mg/m^3)

mg/m^3
TCaro

HPLC; [TCaro] (mg/m^3)

mg/m^3
TAcc

HPLC; [TAcc] (mg/m^3)

mg/m^3
TPig

HPLC; [TPig] (mg/m^3)

mg/m^3
DP

HPLC; [DP] (mg/m^3)

mg/m^3
Pmax

PvsE Exps; Pmax [mgC m^-3 h^-1]

mgC m^-3 h^-1
Pmax_ERROR

PvsE Exps; Pmax ERROR [mgC m^-3 h^-1]

mgC m^-3 h^-1
alpha

PvsE Exps; alpha [mgC m^-3 h^-1 (uE/m^2s)^-1]

mgC m^-3 h^-1 (uE/m^2s)^-1
alpha_ERROR

PvsE Exps; alpha ERROR [mgC m^-3 h^-1 (uE/m^2s)^-1]

mgC m^-3 h^-1 (uE/m^2s)^-1
Fo_particulate

FRRF; Fo (particulate)

(tbd)
Fo_standard_error

FRRF; fo_standard error

(tbd)
Fm_particulate

FRRF; Fm (particulate)

(tbd)
Fm_standard_error

FRRF; Fm_standard error

(tbd)
Fv_particulate

FRRF; Fv (particulate)

(tbd)
Fv_Standard_error

FRRF; Fv Standard error

(tbd)
Fv_to_Fm_particulate

FRRF; Fv/Fm (particulate)

(tbd)
Fv_to_Fm_sterr

FRRF; Fv/Fm_sterr

(tbd)
SigmaPSII_particulate

FRRF; SigmaPSII (particulate) [A^2/quanta]

A^2/quanta
SigmaPSII_Standard_error

FRRF; SigmaPSII Standard error [A^2/quanta]

A^2/quanta
p_value

FRRF; p-value

(tbd)
p_value_standard_error

FRRF; p-value standard error

(tbd)
tau_particulate

FRRF; tau (particulate)

(tbd)
tau_sterr

FRRF; tau_sterr

(tbd)

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Deployments

GF222_BATS

Website
Platform
R/V Atlantic Explorer
Start Date
2007-04-14
End Date
2007-04-20

GF226_BATS

Website
Platform
R/V Atlantic Explorer
Start Date
2007-08-11
End Date
2007-08-19

CH-05-08

Website
Platform
R/V Cape Hatteras
Start Date
2008-07-05
End Date
2008-07-22


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Project Information

Optical and Nutrient Dependence of Quantum Efficiency (ON DEQUE)

Coverage: Western North Atlantic Ocean. Sargasso Sea, Gulf stream, slope waters, shelfbreak front, continental shelf, mid-Atlantic bight


The control of photosynthetic quantum yield of phytoplankton
by light intensity and diapycnal nutrient flux

Primary production in the ocean is probably the least known part of the ocean's
carbon cycle. One reason that primary production is little known is the lack of
understanding of the geographical and temporal variability in phytoplankton physiology.
For example it is only recently that the importance has been revealed, of the
so-called photoprotectant pigments, pigments that, in effect, shield the photosynthetic
apparatus from too much sunlight. This project will investigate the geographic and
temporal variability of a fundamental property of oceanic photosynthesis: the quantum
yield, or the ratio of the available light to the amount of carbon fixed in photosynthesis.
The PIs propose an hypothesis based on earlier measurements, that in the lower parts
of the euphotic zone in the stratified ocean, the upward flux of nutrients regulates
the value of the quantum yield, while in the upper parts, irradiance governs its value,
through the pigment composition of the phytoplankton. This hypothesis will be tested
by making estimates of the quantum yield's maximum value through very careful and
comprehensive measurements of the bio-optical properties and species composition of
the phytoplankton, as well as the submarine light environment, hydrography, and nutrients.
These measurements will be along both temporal and spatial gradients in the ocean to
create the basis for environmental regulation of quantum yield. These measurements will
be used to establish precisely how the maximum value of the quantum yield is regulated
by solar flux and plant nutrients. This research provides a mechanism to understand
how the processes of nutrient supply and light affect the physiology of natural populations
of phytoplankton, a long-standing problem in biological oceanography. It also provides a
means for improving the modeling primary productivity, including estimating productivity
in the global ocean from space.



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Program Information

Ocean Carbon and Biogeochemistry (OCB)


Coverage: Global


The Ocean Carbon and Biogeochemistry (OCB) program focuses on the ocean's role as a component of the global Earth system, bringing together research in geochemistry, ocean physics, and ecology that inform on and advance our understanding of ocean biogeochemistry. The overall program goals are to promote, plan, and coordinate collaborative, multidisciplinary research opportunities within the U.S. research community and with international partners. Important OCB-related activities currently include: the Ocean Carbon and Climate Change (OCCC) and the North American Carbon Program (NACP); U.S. contributions to IMBER, SOLAS, CARBOOCEAN; and numerous U.S. single-investigator and medium-size research projects funded by U.S. federal agencies including NASA, NOAA, and NSF.

The scientific mission of OCB is to study the evolving role of the ocean in the global carbon cycle, in the face of environmental variability and change through studies of marine biogeochemical cycles and associated ecosystems.

The overarching OCB science themes include improved understanding and prediction of: 1) oceanic uptake and release of atmospheric CO2 and other greenhouse gases and 2) environmental sensitivities of biogeochemical cycles, marine ecosystems, and interactions between the two.

The OCB Research Priorities (updated January 2012) include: ocean acidification; terrestrial/coastal carbon fluxes and exchanges; climate sensitivities of and change in ecosystem structure and associated impacts on biogeochemical cycles; mesopelagic ecological and biogeochemical interactions; benthic-pelagic feedbacks on biogeochemical cycles; ocean carbon uptake and storage; and expanding low-oxygen conditions in the coastal and open oceans.



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Funding

Funding SourceAward
NSF Division of Ocean Sciences (NSF OCE)

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