Alongtrack data from R/V Atlantis AT15-61 in the Eastern Tropical South Pacific from January 2010 (Syne_ETSP project)

Website: https://www.bco-dmo.org/dataset/3629
Version:
Version Date: 2012-03-02

Project
» RAPID: Synechococcus diversity and Fe stress and the relationship to dissolved metals in the Eastern Tropical South Pacific (Syne_ETSP)
ContributorsAffiliationRole
Capone, Douglas G.University of Southern California (USC)Chief Scientist, Chief Scientist
Webb, Eric A.University of Southern California (USC)Contact, Contact
Copley, NancyWoods Hole Oceanographic Institution (WHOI BCO-DMO)BCO-DMO Data Manager


Dataset Description

The alongtrack data from RV/Atlantis cruise 15-61 were recorded by the shipboard data acquisition system (Calliope).

The research objectives and planned science activities on this cruise include upper water column biogeochemistry and shallow and deep sediment trap deployment at six major (> 24h) stations and 6 minor (< 24h) stations in the Peru Basin.


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Data Files

File
alongtrack.csv
(Comma Separated Values (.csv), 8.45 MB)
MD5:ba62c75ce6656c6e86c50b6781757b53
Primary data file for dataset ID 3629

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Parameters

ParameterDescriptionUnits
cog

GPS course over ground

degrees
cond_ss

Sea Surface Conductivity (FSI)

mmho/cm or milli-Siemens/centimeter
yrday_gmt

GMT day and decimal time, as 326.5 for the 326th day of the year, or November 22 at 1200 hours (noon).

no units
flvolt

Fluorescence

mV
head

Ship's heading

degrees true
head2

ship's heading using Phins

degrees true
humidity

IMET % relative humidity

%
humidity2

Relative humidity from port side using WXT520

%
lat

Decimal Latitude; South is negative

decimal degrees
lon

Decimal Longitude; West is negative

decimal degrees
press_bar

Barometric pressure; not corrected for 19.5m height above waterline

no units
press_bar2

Barometric pressure from port side using WXT520

no units
radiation_s

IMET Shortwave Radiation

watts/square meter
rain_accum

Rain accumulation from port side using WXT520

mm
rain_intensity

Rain intensity from port side using WXT520

mm/h
sal_ss

Salinity calculated from SST and SSC

psu?
sog

GPS speed over ground

knots
sound_vel

Sound velocity

meters/second
temp_air

Air Temp

degrees C
temp_air2

Air temperature from port side using WXT520

degrees C
temp_ss

Sea Surface Temperature

degrees C
time_gmt

GMT Time

hh:mm:ss
wind_dir_c

True Wind Direction

deg
wind_dir_r

Relative wind direction from port side using WXT520

degrees ship relative
wind_speed_c

True Wind Speed

m/s
wind_speed_r

Relative wind speed from port side using WXT520

m/sec


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Instruments

Dataset-specific Instrument Name
Anemometer
Generic Instrument Name
Anemometer
Dataset-specific Description
Gill WindObserver II Ultrasonic Anemometer
Generic Instrument Description
An anemometer is a device for measuring the velocity or the pressure of the wind. It is commonly used to measure wind speed. Aboard research vessels, it is often mounted with other meteorological instruments and sensors.

Dataset-specific Instrument Name
Fluorometer
Generic Instrument Name
Fluorometer
Dataset-specific Description
WetLabs Wet-Star fluorometer located in the Hydro Lab clean seawater piping. A MetraByte A/D converter is used to convert the 0-5 vdc fluorometer output to serial data. This device sets the output decimal point as necessary for best resolution, which results in a 1 vdc fluorometer value being represented as +01000.00 in the raw MetraByte serial stream.  
Generic Instrument Description
A fluorometer or fluorimeter is a device used to measure parameters of fluorescence: its intensity and wavelength distribution of emission spectrum after excitation by a certain spectrum of light. The instrument is designed to measure the amount of stimulated electromagnetic radiation produced by pulses of electromagnetic radiation emitted into a water sample or in situ.

Dataset-specific Instrument Name
Global Positioning System Receiver
Generic Instrument Name
Global Positioning System Receiver
Dataset-specific Description
NorthStar 941 GPS receiver NMEA (National Marine Electronics Association) output Format:  $--RMC,hhmmss.ss,S,lat,a,lon,a,x.x,y.y,ddmmyy,m.m,d*hh   Time = UTC of position fix   S = Status ("A" = valid, "V" =  receiver warning)   Lat & Lon   x.x = speed over ground (knots)   y.y = Course over ground (degrees true)   ddmmyy = date   m.m,d = magnetic variation, degrees ("E" subtracts from true, "W" adds to true)  
Generic Instrument Description
The Global Positioning System (GPS) is a U.S. space-based radionavigation system that provides reliable positioning, navigation, and timing services to civilian users on a continuous worldwide basis. The U.S. Air Force develops, maintains, and operates the space and control segments of the NAVSTAR GPS transmitter system. Ships use a variety of receivers (e.g. Trimble and Ashtech) to interpret the GPS signal and determine accurate latitude and longitude.

Dataset-specific Instrument Name
Improved Meteorological Recorder
Generic Instrument Name
Improved Meteorological Recorder
Dataset-specific Description
Sensors mounted on the bow mast at a height of 20 m above the waterline. http://www.whoi.edu/page.do?cid=11368&pid=8415&tid=282
Generic Instrument Description
An IMET Recorder is an instrument package that can be mounted on a ship or buoy to record mean weather data including air and sea-surface temperature, incoming short and long-wave radiation, precipitation, humidity, wind velocity and barometric pressure. Each sensor in the system communicates digitally and returns calibrated values to a central data recorder.

Dataset-specific Instrument Name
Knudsen 320 BR deepwater echosounder
Generic Instrument Name
Knudsen 320 BR deepwater echosounder
Dataset-specific Description
Knudsen bathymetry ( Knudsen) Depth to surface (meters). Format: $PKEL99,HF,xx.xx,cc.cc,LF,yy.yy,cc.cc,ssss,lat,lon "HF" High freq header xx.xx 12 kHz depth to surface using cc.cc & ssss corrections (meters) cc.cc depth of 12 kHz transducer (meters) "LF" Low freq header yy.yy 3.5 kHz depth to surface using cc.cc & ssss corrections (meters) cc.cc depth of 3.5 kHz transducer (meters) ssss sound speed used for depth calculations (m/s) Lat Latitude Lon Longitude Note - 12 kHz and 3.5 kHz transducers are at 5.95m (19.5 ft) depth on Atlantis.
Generic Instrument Description
The Knudsen 320 B/R deepwater echosounder is a digital data logging system used to measure water depth (e.g. depth of the seafloor). The system is configured to work with different frequency transducers. For example, the Edo 323 B is a 12 kHz High Frequency (HF) transducer or it can be configured to work with an array of 3.5 kHz Low Frequency (LF) transducers mounted in the hull of a vessel.

Dataset-specific Instrument Name
Thermosalinograph
Generic Instrument Name
Thermosalinograph
Dataset-specific Description
Seabird SBE 45 MicroTSG -or- Falmouth Scientific TSG. Located in bow thruster room; intake ~5m BWL
Generic Instrument Description
A thermosalinograph (TSG) is used to obtain a continuous record of sea surface temperature and salinity. On many research vessels the TSG is integrated into the ship's underway seawater sampling system and reported with the underway or alongtrack data.

Dataset-specific Instrument Name
Weather transmitter
Generic Instrument Name
Weather Transmitter
Generic Instrument Description
The ship-mounted Vaisala Weather Transmitter WXT520 measures: Wind speed and direction; Liquid precipitation: rainfall, duration, intensity; Barometric pressure; Air temperature and Relative humidity. (for more information see http://www.vaisala.com/en/products/multiweathersensors/Pages/WXT520.aspx)


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Deployments

AT15-61

Website
Platform
R/V Atlantis
Start Date
2010-01-29
End Date
2010-03-03
Description
See more information at R2R: https://www.rvdata.us/search/cruise/AT15-61


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Project Information

RAPID: Synechococcus diversity and Fe stress and the relationship to dissolved metals in the Eastern Tropical South Pacific (Syne_ETSP)

Coverage: Eastern Tropical South Pacific, coast of Chile


The unicellular cyanobacterium Synechococcus is one of the most widespread and abundant photosynthetic organisms in the ocean, contributing substantially to marine primary production. It is also extremely diverse, with 16 clades identified so far. This diversity, however, has yet to be correlated with specific, well-defined ecological niches. It is important to define what these ecological niches are in order to determine the significance of Synechococcus diversity, i.e., does the clade present in a certain regime have a large impact on biogeochemical cycling in that area? In parallel, the distribution of the clades must also be defined, to able to understand more clearly the role of Synechococcus in the ocean, and how it might change in the future. In the funded project, "The role of iron (Fe) in controlling in situ distributions and activities of marine Synechococcus OCE-0825922" investigators Jill A Sohm (J.A.S.) and Eric Webb have been mapping the distribution of Synechococcus clades in the western Pacific, the North and South Atlantic, and off the coast of Los Angeles, in order to better define the ecological niches of the many clades of Synechococcus. In this project, Webb and Sohm will participate in a research cruise occurring in February 2010 in the Eastern Tropical South Pacific (ETSP), a data poor region with little known about the ecology of its picocyanobacteria. While it has been shown the Synechococcus from clade four dominate the upwelling region farther south of the proposed cruise, the diversity of the population farther offshore is much less well defined. This cruise would allow expansion of the current database of Synechococcus clade distribution to an area where there is little to no data, and add experimental field work to an existing project, testing the specific affects of Fe, light, temperature and nutrients on the diversity of field populations. These data combined with concurrent lab research will provide insight into the potential of oceanic change to affect the distribution and the activity of Synechococcus.

In addition to defining the role and impact of Fe limitation on marine Synechococcus activity and diversity in the field, this project will develop field incubation-tested, quantitative PCR-based Fe stress diagnostics that will be available to the community. Furthermore, the investigators will attempt to isolate and make available Synechococcus strains from the region; as such representatives are not in existence. The upkeep and addition to the culture collection in the Webb lab is an important service for the oceanographic community, as these strains are sent to any researcher that requests them without charge. Metadata obtained on this cruise will be shared with the oceanographic community by depositing them in a national database. Lastly this project will provide valuable research cruise experience and career development for one post-doctoral fellow, J.A.S., and one graduate student.



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Funding

Funding SourceAward
NSF Division of Ocean Sciences (NSF OCE)
NSF Division of Ocean Sciences (NSF OCE)
NSF Division of Ocean Sciences (NSF OCE)

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