Table of Contents

• Dataset Description
  • Methods & Sampling
  • Data Processing Description
• Data Files
• Parameters
• Instruments
• Deployments
• Project Information
• Funding

Data from laboratory experiments testing the effect of auto-induction on the marine diatorms Thalassiosira pseudonana and Phaeodactylum tricornutum. 

Laboratory experiments were conducted to test auto-induction in marine diatoms.  Experiments were conducted including initial tests to establish a reliable and repeatable protocol at each step of the experimental design.  All findings are based on triplicate experiments, i.e. each treatment in triplicate.

For further details of Methods and Analytical Methodology, please contact the PI.

Data were plotted;  points above or below one standard deviation were considered outliers. Averages and Standard Deviations were calculated from Excel.

Quality control:  Several experimental designs failed and are not included.  Only data of publishable quality are included in the data file.

Description from NSF award abstract:
Recent discoveries have shown that cell-cell communication extends from the intra-species to the inter-kingdom level and play pivotal roles in population-wide biological events such as changes in morphology, metabolic state and population structure. Quorum sensing (QS) is a communication process that allows single cells to cooperatively function as a decentralized network. Studies in prokaryotes and, more recently, fungi have demonstrated that QS regulates the timing of key biological processes such as colony formation, sporulation, morphological changes, pathogenicity and sexual reproduction. In the marine environment, QS has been demonstrated in bacteria however, this level of mutual cooperation has not been considered for phytoplankton populations. In view of the emerging literature on the critical role of cell-cell communication, it is timely to reconsider how we regard marine phytoplankton.

Thus far marine phytoplankton cell-cell interaction studies have primarily focused on chemical signals for competition against other species (e.g. allelopathy), predation deterrence and warning systems for environmental stress. There are several lines of circumstantial evidence to support QS in phytoplankton such as the timing of cell division, density dependent allelopathy and programmed cell death. However, to our knowledge there has been no direct experimentation to determine if phytoplankton can function in a cooperative consortium. Do they have a quorum sensing-type of communication to regulate intra-species processes as well as modulates inter-species interactions? Are recurrent phytoplankton communities established because these species are able to communicate with each member serving a specific role to maintain the population? These are difficult questions to address but have far reaching implications in our understanding of phytoplankton ecology.

This project will test whether phytoplankton have a QS system by examining the process of autoinduction (a basic tenant for QS) for specific biological events. The PIs will test this by examining two specific areas using phytoplankton ecological and physiological measurements coupled with state of the art bio-informatic and genomic tools:

1. Perform an extensive search for candidate phytoplankton QS-related genes in existing genomic and gene expression databases, based on homology with QS-related genes from other organisms. The PIs will conduct a detailed analysis to definitively map homologs of these QS regulatory pathways in their entirety as well as the few known biosynthetic pathways of QS compounds and transcriptional/translational regulators onto phytoplankton genomes. The results will be included as part of a comparative genomics study on cell-to-cell communication in phytoplankton, and the possible role of any candidate genes in QS will be tested by the experiments detailed below (2).

2. Establish autoinduction of cellular processes in a diatom species using an experimental approach. The PIs will focus on the autoinduction of growth, cell morphology, allelopathy and biofilm formation using axenic cultures using two model diatom species, Phaeodactylum tricornutum Bohlin and Thalassiosira pseudonana.

The establishment of a QS-like communication system will bring in a new perspective to our views on phytoplankton ecology beyond our current paradigm of bottom-up and top-down controls or competitive interactions. Results from this study will also influence our views on the factors controlling phytoplankton population diversity, as we will now have to consider the role of inter-species communication. Funding through an EAGER proposal will provide support for exploratory, high-risk research to obtain a minimum set of data as proof of concept of QS in phytoplankton.