SAMPLE ANALYSES

REFERENCES

RELATED FILES AND REFERENCES:

16S amplicon DNA sequences to the Sequence Read Archive (SRA) at the National Center for Biotechnology Information (NCBI) under Accession SAMN02863536-SAMN02863970.

Metatranscriptomic sequence data to the BioProject Archive at NCBI under Accession PRJNA222777. http://www.ncbi.nlm.nih.gov/bioproject/PRJNA222777

Lee, D. Y., M. S. Owens, B. C. Crump, and J. C. Cornwell. 2014. The Effects of Oxygen Transition on Community Respiration and Potential Chemoautotrophic Production in a Seasonally Stratified Anoxic Estuary. Estuaries and Coasts. DOI 10.1007/s12237-014-9803-8. http://link.springer.com/article/10.1007/s12237-014-9803-8

Hewson, I., E. Eggleston, M. Doherty, D. Y. Lee, M. Owens, J. P. Shipleigh, J. C. Cornwell, and B. C. Crump. 2014. Metatranscriptomic analyses of plankton communities inhabiting surface and sub-pycnocline waters of the Chesapeake Bay during oxic-anoxic-oxic transitions. Applied And Environmental Microbiology 80:328-338. http://aem.asm.org/content/early/2013/10/21/AEM.02680-13

DMO notes:
Format or vocabulary adjustments to metadata primarily involved controlling the vocabulary and adding UNOLS names for the cruises.
Date changed to date_local
Time -> time_local
Vessel -> platform
Cruise -> cruise [Inserted cruise_new to give column for UNOLS name]
Lowercase Filtered, Cast, Depth [added cast_new to separate alpha and numeric for mapper]
Abbreviated Latitude, Longiture, Conductivity, Temperature, Salinity, Fluorescence
Decoded Oxygen1 -> O2_conc and Oxygen2 -> O2_rate

In keeping with BCO-DMO best practices, ISODateTime has been added as a formatted time column. At this time it is local time.

water_samples.csv