Contributors | Affiliation | Role |
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Teske, Andreas | University of North Carolina at Chapel Hill (UNC-Chapel Hill) | Principal Investigator, Contact |
MacGregor, Barbara J. | University of North Carolina at Chapel Hill (UNC-Chapel Hill) | Co-Principal Investigator |
Rauch, Shannon | Woods Hole Oceanographic Institution (WHOI BCO-DMO) | BCO-DMO Data Manager |
Porewater geochemistry data for sediment samples that were included in global seep survey.
Geochemical Analyses:
Sulfate concentration measurements were completed shipboard; after centrifuging sediment-filled 15 ml tubes, the overlying porewater was filtered through 0.45 um filters, acidified with 50 ul of 50% HCl and bubbled with nitrogen for 4 minutes to remove sulfide. Sulfate concentrations were then measured shipboard using a 2010i Dionex Ion Chromatograph (Sunnyvale, CA, USA) through Ag+ exchange columns (Dionex) so as to remove Cl- (Martens et al., 1999).
For sulfide, 1 ml porewater samples were combined with 0.1M zinc acetate and concentrations were analyzed spectrophotometrically on the ship (Cline 1969).
For methane, sediment subsamples were added to serum bottles containing a 0.1 M sodium hydroxide solution. Headspace methane concentrations were determined onboard using standard gas chromatography using a flame ionization detector. Stable isotopic compositions of methane was measured via gas chromatography/combustion/isotope ratio mass spectrometry (GC/C/IRMS) on a Finnigan MAT 252 Isotope Ratio Mass Spectrometer.
To measure DIC, 2 ml of unamended porewater from each sediment horizon were injected into evacuated serum vials (30 ml) and stored upside down at -20 degrees C. At UNC, the samples were thawed, and DIC was volatilized by adding 1 ml 30% phosphoric acid to each serum vial and shaking vigorously before GC analysis (Kelley et al., 1990). Stable isotopic values and concentrations of DIC were analyzed via coupled GC (Hewlett Packard 5890) and Isotope Ratio Mass Spectrometer (Finnigan MAT 252).
The porewater data of Guaymas Basin sediment have been tabulated in Excel sheets and were in part used to characterize Guaymas Basin samples that were included in a global census of seep microbiota (Ruff et al. 2015).
BCO-DMO processing:
- Extracted table from Word document.
- Modified format of date.
- Removed trailing N and W from lat/lon values. Changed lat values to negative (to indicate West).
- Created separate columns for depth_min and depth_max.
- Separated columns for CH4, SO4, HS-.
File |
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porewater_geochem_Ruff.csv (Comma Separated Values (.csv), 589 bytes) MD5:87fe6e9da56b1beb8cd35ff2b2734760 Primary data file for dataset ID 559738 |
Parameter | Description | Units |
sample | Sample identification number. | alphanumeric |
cruise_id | Cruise identification number. | alphanumeric |
date | Month, day, and year of sampling. | mm/dd/YYYY |
month | 2-digit month of sampling. | mm (01 to 12) |
day | 2-digit day of sampling. | dd (01 to 31) |
year | 4-digit year of sampling. | YYYY |
lat | Latitude in decimal degrees North. | decimal degrees |
lon | Longitude in decimal degrees East (negative = West). | decimal degrees |
depth_range | Range of depth of the sediment sample. | centimeters |
depth_min | Minimum depth of the sediment sample. | centimeters |
depth_max | Maxium depth of the sediment sample. | centimeters |
temp_approx | Approximate temperature. | degrees Celsius |
CH4 | Methane(CH4) concentration determined in closest geochemistry core. | milli-Molar (mM) |
SO4 | Sulfate (SO4) concentration determined in closest geochemistry core. | milli-Molar (mM) |
HS | Sulfide (HS-) concentration determined in closest geochemistry core. | milli-Molar (mM) |
closest_geochemistry_core | Identification number of the closest geochemistry core. | alphanumeric |
Dataset-specific Instrument Name | Hewlett Packard 5890 |
Generic Instrument Name | Gas Chromatograph |
Dataset-specific Description | Stable isotopic values and concentrations of DIC were analyzed via coupled GC (Hewlett Packard 5890) and Isotope Ratio Mass Spectrometer (Finnigan MAT 252). |
Generic Instrument Description | Instrument separating gases, volatile substances, or substances dissolved in a volatile solvent by transporting an inert gas through a column packed with a sorbent to a detector for assay. (from SeaDataNet, BODC) |
Dataset-specific Instrument Name | 2010i Dionex Ion Chromatograph |
Generic Instrument Name | Ion Chromatograph |
Dataset-specific Description | Sulfate concentrations were measured shipboard using a 2010i Dionex Ion Chromatograph (Sunnyvale, CA, USA) through Ag+ exchange columns (Dionex). |
Generic Instrument Description | Ion chromatography is a form of liquid chromatography that measures concentrations of ionic species by separating them based on their interaction with a resin. Ionic species separate differently depending on species type and size. Ion chromatographs are able to measure concentrations of major anions, such as fluoride, chloride, nitrate, nitrite, and sulfate, as well as major cations such as lithium, sodium, ammonium, potassium, calcium, and magnesium in the parts-per-billion (ppb) range. (from http://serc.carleton.edu/microbelife/research_methods/biogeochemical/ic....) |
Dataset-specific Instrument Name | Finnigan MAT 252 Isotope Ratio Mass Spectrometer |
Generic Instrument Name | Isotope-ratio Mass Spectrometer |
Dataset-specific Description | Stable isotopic compositions of methane was measured via gas chromatography/ combustion/isotope ratio mass spectrometry (GC/C/IRMS) on a Finnigan MAT 252 Isotope Ratio Mass Spectrometer.
Stable isotopic values and concentrations of DIC were analyzed via coupled GC (Hewlett Packard 5890) and Isotope Ratio Mass Spectrometer (Finnigan MAT 252). |
Generic Instrument Description | The Isotope-ratio Mass Spectrometer is a particular type of mass spectrometer used to measure the relative abundance of isotopes in a given sample (e.g. VG Prism II Isotope Ratio Mass-Spectrometer). |
Website | |
Platform | R/V Atlantis |
Report | |
Start Date | 2008-12-05 |
End Date | 2008-12-18 |
Description | R/V Atlantis cruise in Guaymas Basin where 12 Alvin dives were made.
Cruise information and original data are available from the NSF R2R data catalog. |
Website | |
Platform | HOV Alvin |
Start Date | 2008-12-06 |
End Date | 2008-12-17 |
Description | The Alvin dives of cruise AT15-40 (dive numbers 4483 through 4493) are listed below, with dive targets and shipfix and subfix position.
Alvin dive 4483
December 6, 2008
Pilot: Sean Kelley
Observers: Andreas Teske, Karen G. Lloyd
Dive target: Marker 4; 2004 m depth
Ship fix: 27°N00.388, 111°W24.560; Subfix: none
Alvin Dive 4484
December 7, 2008
Pilot: Bruce Strickrott
Observers: Frank Wenzhoefer, Stephanie Gruenke
Dive target: Marker 4; 2004 m depth
Ship fix: 27°N00.388, 111°W24.560; Subfix: none
Alvin Dive 4485
December 8, 2008
Pilot: Mark Spear
Observers: Howard Mendlovitz, Jennifer Biddle
Dive target: Marker 1; 2010 m depth
Ship fix: 27°N00.464, 111°W24.512; Subfix: 27°N00.459, 111°W24.526
Alvin Dive 4486
December 9, 2008
Pilot: Sean Kelley
Observers: Bo B. Jørgensen, Antje Vossmeyer
Dive target: Marker 1; 2010 m depth
Ship fix: 27°N00.464, 111°W24.512; Subfix: 27°N00.459, 111°W24.526
Alvin Dive 4487
December 10, 2008
Pilot: Bruce Strickrott, Pilot-in-Training: Mike Skowronski
Observer: Javier Caraveo
Dive target: Marker 1; 2010 m depth
Ship fix: 27°N00.464, 111°W24.512; Subfix: 27°N00.459, 111°W24.526
Alvin Dive 4488
December 12, 2008
Pilot: Mark Spear
Observers: Julius Lipp, Barbara MacGregor
Dive target: Marker 1; 2010 m depth
Ship fix: 27°N00.464, 111°W24.512; Subfix: 27°N00.459, 111°W24.526
Alvin Dive 4489
December 13, 2008
Pilot: Sean Kelley
Observers: Daniel B. Albert, Luke McKay
Dive target: Marker 1; 2010 m depth
Ship fix: 27°N00.464, 111°W24.512; Subfix: 27°N00.459, 111°W24.526
Alvin Dive 4490
December 14, 2008
Pilot: Bruce Strickrott
Observers: Andreas Teske, Frank Wenzhoefer
Dive target: Marker 1; 2010 m depth
Ship fix: 27°N00.464, 111°W24.512; Subfix: 27°N00.459, 111°W24.526
Alvin Dive 4491
December 15, 2008
Pilot: Mark Spear
Observers: Howard Mendlovitz, Julia Rezende
Dive target: Marker 6; 2005 m depth
Ship fix: 27°N00.423, 111°W24.477; Subfix: 27°N00.423, 111°W24.492
Alvin Dive 4492
December 16, 2008
Pilot: Sean Kelley, Pilot-in-Training: Mike Skowronski
Observer: Alban Ramette
Dive target: Marker 1; 2010 m depth
Ship fix: 27°N00.464, 111°W24.512; Subfix: 27°N00.459, 111°W24.526
Alvin Dive 4493
December 17, 2008
Pilot: Bruce Strickrott
Observers: Daniel Santillano, Matthias Kellermann
Dive target: Marker 1; 2010 m depth
Ship fix: 27°N00.464, 111°W24.512; Subfix: 27°N00.459, 111°W24.526 |
Description from NSF award abstract:
Hydrothermally active sediments in the Guaymas Basin are dominated by novel microbial communities that catalyze important biogeochemical processes in these seafloor ecosystems. This project will investigate genomic potential, physiological capabilities and biogeochemical roles of key uncultured organisms from Guaymas sediments, especially the high-temperature anaerobic methane oxidizers that occur specifically in hydrothermally active sediments (ANME-1Guaymas). The study will focus on their role in carbon transformations, but also explore their potential involvement in sulfur and nitrogen transformations. First-order research topics include quantifying anaerobic methane oxidation under high temperature,in situ concentrations of phosphorus and methane , and with alternate electron acceptors; sulfate and sulfur-dependent microbial pathways and isotopic signatures under these conditions; and nitrogen transformations in methane-oxidizing microbial communities, hydrothermal mats and sediments.
This integrated biogeochemical and microbiological research will explore the pathways of and environmental controls on the consumption and production of methane, other alkanes, inorganic carbon, organic acids and organic matter that fuel the Guaymas sedimentary microbial ecosystem. The hydrothermal sediments of Guaymas Basin provide a spatially compact, high-activity location for investigating novel modes of methane cycling and carbon assimilation into microbial biomass. In the case of anaerobic methane oxidation, the high temperature and pressure tolerance of Guaymas Basin methane-oxidizing microbial communities, and their potential to uncouple from the dominant electron acceptor sulfate, vastly increase the predicted subsurface habitat space and biogeochemical role for anaerobic microbial methanotrophy in global deep subsurface diagenesis. Further, microbial methane production and oxidation interlocks with syulfur and nitrogen transformations, which will be explored at the organism and process level in hydrothermal sediment microbial communities and mats of Guaymas Basin. In general, first-order research tasks (rate measurements, radiotracer incorporation studies, genomes, in situ microgradients) define the key microbial capabilities, pathways and processes that mediate chemical exchange between the subsurface hydrothermal/seeps and deep ocean waters.
Funding Source | Award |
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NSF Division of Ocean Sciences (NSF OCE) |