Dataset: Proteins from Inferno hydrothermal vent plume meta-proteome - replicate Av2

ValidatedFinal no updates expectedVersion final (2015-12-08)Dataset Type:Cruise ResultsDataset Type:experimental

Principal Investigator, Contact: Robert Morris (University of Washington)

BCO-DMO Data Manager: Ms Dicky Allison (Woods Hole Oceanographic Institution)


Project: Mixotrophic bacteria and the cryptic marine sulfur cycle: Mechanisms of carbon assimilation and sulfur oxidation in the Arctic96BD-19 GSO clade (Sulfur Oxidizers)

Proteins identified in the Inferno hydrothermal vent plume meta-proteome (replicate Av2).  Only proteins identified by peptides with a protein probability >0.9 are listed. 

These data are reported as Supplementary Table 4 and discussed in Mattes et al., 2013. (doi:10.1038/ismej.2013.113)

The FASTA information in the data was expanded to include the metadata when those FASTA headers were linked to GenBank. 

Proteins that were identified in biological replicate AV2 that were not identified in biological replicate Av1. (GSO: Gamma Sulfur Oxidizer)


 

 

 

 

 

DMO notes:
Put multiple FASTA entries on separate lines
Split out one number in FASTA header for linking
Sorted by entry number
Added linkage column
Removed commas in 'consensus annotation' column (signals database to put in new column)
Reordered columns to put KEGG last -- much longer than any other column
Changed ' to P within field because system won't take unmatched quotes. Means 'prime'.


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