Whole organism mRNA sequencing - RNAseq data from mRNA from McMurdo Station Hofmann Antarctica at McMurdo Station starting 2015 (OA pH, Temperature, Calcium Inverts project)

Website: https://www.bco-dmo.org/dataset/639502
Version: 03 March 2016
Version Date: 2016-03-03

Project
» Linking natural variability and anthropogenic changes in pH and temperature to performance in calcifying Antarctic marine invertebrates (OA pH, Temp, Calc Inverts)
ContributorsAffiliationRole
Hofmann, Gretchen E.University of California-Santa Barbara (UCSB-LifeSci)Principal Investigator, Contact
Johnson, KevinUniversity of California-Santa Barbara (UCSB-LifeSci)Student, Contact
Gegg, Stephen R.Woods Hole Oceanographic Institution (WHOI BCO-DMO)BCO-DMO Data Manager


Dataset Description

Accession number: SRR2463656.
Species name: /Limacina helicina antarctica/
Description of the types of sequences: *Whole organism mRNA sequencing
Locations where species were collected:
77.5649°S, 166.18712°E
Sequencing and analysis methods: mRNA sequencing on an Illumina
NextSeq500 using the mid-output mode with 300 cycles and 150 bp
paired-end reads.


Methods & Sampling

Accession number: SRR2463656.
Species name: /Limacina helicina antarctica/
Description of the types of sequences: *Whole organism mRNA sequencing
Locations where species were collected:
77.5649°S, 166.18712°E
Sequencing and analysis methods: mRNA sequencing on an Illumina
NextSeq500 using the mid-output mode with 300 cycles and 150 bp
paired-end reads.


Data Processing Description

Accession number: SRR2463656.
Species name: /Limacina helicina antarctica/
Description of the types of sequences: *Whole organism mRNA sequencing
Locations where species were collected:
77.5649°S, 166.18712°E
Sequencing and analysis methods: mRNA sequencing on an Illumina
NextSeq500 using the mid-output mode with 300 cycles and 150 bp
paired-end reads.


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Parameters

ParameterDescriptionUnits
Accession_Number

Accession Number

text
Species_Name

Species Name

text
Description

Accession Description

text
Site

Site of Collection

text
Latitude

Latitude (South is negative)

decimal degrees
Longitude

Longitude (West is negative)

decimal degrees
Sequencing_and_Analysis_Methods

Accession Sequencing and Analysis Methods

text
link

Link to Accession in Genbank

text

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Deployments

Hofmann_Antarctica_McMurdoStation

Website
Platform
McMurdo Station
Start Date
2015-06-01
End Date
2015-06-01


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Project Information

Linking natural variability and anthropogenic changes in pH and temperature to performance in calcifying Antarctic marine invertebrates (OA pH, Temp, Calc Inverts)

Coverage: McMurdo Sound, Antarctica


Abstract: The research supported in this project will examine the effects of environmental change on a key Antarctic marine invertebrate, a pelagic mollusk, the pteropod, Limacina helicina antarctica. There are two main activities in this project: (1) to deploy oceanographic equipment, in this case, autonomously recording pH sensors called SeaFETs and other devices that record temperature and salinity, and (2) to use these environmental data in the laboratory at McMurdo Station to study the response of the marine invertebrates to future changes in water quality that is expected in the next few decades. Notably, changes in oceanic pH (aka ocean acidification) and ocean warming are projected to be particularly threatening to calcifying marine organisms in cold-water, high latitude seas, making tolerance data on these organisms a critical research need in Antarctic marine ecosystems. 

These Antarctic shelled-animals are especially vulnerable to dissolution stress from ocean acidification because they currently inhabit seawater that is barely at the saturation level to support biogenic calcification. Indeed, these polar animals are considered to be the 'first responders' to chemical changes in the surface oceans. Thus, this project will lead to information about the adaptive capacity of L. helcina antarctica. From an ecological perspective this is important because this animal is a critical part of the Antarctic food chain in coastal waters and changes in its abundance will impact other species. Finally, the research conducted in this project will serve as a training and educational opportunity for undergraduate and graduate students as well as postdoctoral scholars.



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Funding

Funding SourceAward
NSF Antarctic Sciences (NSF ANT)
NSF Antarctic Sciences (NSF ANT)

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