Dataset: HOE-LEGACY 2A diel_FCM

Name: Flow cytometer cell counts from R/V Kilo Moana KM1513 (HOE-LEGACY 2A ) near Hawaii (22.75 N, 158 W) from July to August 2015 (C-MORE project, SCOPE project)
Published: 2016-03-11
Keywords: oceans

Cite This Dataset

Spatial Extent: N:24.603 E:-156.293 S:24.283 W:-156.807

Project:

Center for Microbial Oceanography: Research and Education (C-MORE)

Simons Collaboration on Ocean Processes and Ecology (SCOPE)

Principal Investigator:

David M. Karl (University of Hawaiʻi at Mānoa, SOEST)

Contact:

Mr Eric Shimabukuro (University of Hawaiʻi at Mānoa, SOEST)

Data Manager:

Jasmine Nahorniak (Oregon State University, OSU-CEOAS)

BCO-DMO Data Manager:

Stephen R. Gegg (Woods Hole Oceanographic Institution, WHOI BCO-DMO)

Version:

11 March 2016

Version Date:

2016-03-11

Restricted:

Current State:

Final no updates expected

Flow cytometer cell counts from R/V Kilo Moana KM1513 (HOE-LEGACY 2A ) near Hawaii (22.75 N, 158 W) from July to August 2015 (C-MORE project, SCOPE project)

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Description

# HOE-LEGACY 2A diel flow cytometry
# Laboratory for Microbial Oceanography, University of Hawaii
# Eric Shimabukuro
# CMORE/HOE-LEGACY-2A
# date ingested into BCO-DMO: March 11, 2016

Data Files

File
diel_FCM.csv (Comma Separated Values (.csv), 4.79 KB) MD5:80f66402d381bef16b0bafffab27167e Primary data file for dataset ID 640984

More Information about this dataset

Funding Sources

Funding Source	Award Number
Simons Foundation	unknown SCOPE Simons
NSF Division of Biological Infrastructure	DBI-0424599

Deployments

Deployment	Synonyms	Start Date	Platform	Investigator
KM1513	HOE-Legacy-2A SCOPE-2A	2015-07-24	R/V Kilo Moana	Samuel Wilson (Chief Scientist)	data info

Instruments

CTD Sea-Bird SBE 911plus

Supplied Name: CTD Sea-Bird SBE 911 plus

Supplied Description:

CTD Sea-Bird SBE 911 plus

Instrument Type

Generic Name: CTD Sea-Bird SBE 911plus

Acronym: CTD SBE 911plus

Community Identifier: http://vocab.nerc.ac.uk/collection/L22/current/TOOL0058/

Generic Description:

The Sea-Bird SBE 911 plus is a type of CTD instrument package for continuous measurement of conductivity, temperature and pressure. The SBE 911 plus includes the SBE 9plus Underwater Unit and the SBE 11plus Deck Unit (for real-time readout using conductive wire) for deployment from a vessel. The combination of the SBE 9 plus and SBE 11 plus is called a SBE 911 plus. The SBE 9 plus uses Sea-Bird's standard modular temperature and conductivity sensors (SBE 3 plus and SBE 4). The SBE 9 plus CTD can be configured with up to eight auxiliary sensors to measure other parameters including dissolved oxygen, pH, turbidity, fluorescence, light (PAR), light transmission, etc.). more information from Sea-Bird Electronics

Flow Cytometer

Supplied Description:

Flow Cytometer

Instrument Type

Generic Name: Flow Cytometer

Community Identifier: http://vocab.nerc.ac.uk/collection/L05/current/LAB37/

Generic Description:

Flow cytometers (FC or FCM) are automated instruments that quantitate properties of single cells, one cell at a time. They can measure cell size, cell granularity, the amounts of cell components such as total DNA, newly synthesized DNA, gene expression as the amount messenger RNA for a particular gene, amounts of specific surface receptors, amounts of intracellular proteins, or transient signalling events in living cells.
(from: http://www.bio.umass.edu/micro/immunology/facs542/facswhat.htm)

Niskin bottle

Supplied Name: Niskin Bottle

Supplied Description:

Niskin Bottle

Instrument Type

Generic Name: Niskin bottle

Community Identifier: http://vocab.nerc.ac.uk/collection/L22/current/TOOL0412/

Generic Description:

A Niskin bottle (a next generation water sampler based on the Nansen bottle) is a cylindrical, non-metallic water collection device with stoppers at both ends. The bottles can be attached individually on a hydrowire or deployed in 12, 24, or 36 bottle Rosette systems mounted on a frame and combined with a CTD. Niskin bottles are used to collect discrete water samples for a range of measurements including pigments, nutrients, plankton, etc.

Parameters

Date and time formats are described in python strftime() syntax.

Supplied Name	Supplied description	Supplied Units	Standard Name
sta	station number	dimensionless	sta
cast	cast number	dimensionless	cast
date	date	YYYYMMDD	date
time	time of day (GMT)	HHMM	time
lat	latitude (north is positive)	decimal degrees	lat
lon	longitude (east is positive)	decimal degrees	lon
bot	CTD bottle number	dimensionless	bot
depth	depth of measurement	meters	depth
coccus_p_cyt	prochlorococcus abundance; cytometry	cells/milliliter	coccus_p_cyt
coccus_s_cyt	synechococcus abundance; cytometry	cells/milliliter	coccus_s_cyt
phyto_e_cyt	eukaryotic phytoplankton abundance; cytometry	cells/milliliter	abundance
bact_het_cyt	heterotrophic bacteria abundance; cytometry	cells/milliliter	bact_het_cyt

Status message

Database

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Dataset: HOE-LEGACY 2A diel_FCM