LTR - Percent Cover Point Contact

Website: https://www.bco-dmo.org/dataset/645000
Version: 23 May 2016
Version Date: 2016-05-23

Project
» Cryptic density dependence: the effects of spatial, ontogenetic, and individual variation in reef fish (CDD_in_Reef_Fish)
ContributorsAffiliationRole
Osenberg, CraigUniversity of Georgia (UGA)Principal Investigator, Contact
Frazer, ThomasUniversity of Florida (UF)Co-Principal Investigator
Shima, JeffreyVictoria University of WellingtonInternational Collaborator
Gegg, Stephen R.Woods Hole Oceanographic Institution (WHOI BCO-DMO)BCO-DMO Data Manager


Dataset Description

Reef composition was surveyed on all 192 reefs between years 2003-2005. The Focal Point Contact (Point Contact) method was used to determine the major substrate types that occupy each reef. Beginning in 2012, reefs 129-144 were used for a manipulative experiment; data beginning in 2012 for these reefs can be found in the project “Spatial patterns of coral-vermetid interactions: short-term effects and long-term consequences.” These data are meant to verify visual cover estimates at each reef (found in the dataset “Percent Visual Cover”).

Location: Moorea, French Polynesia (17.48 degrees S, 149.82 degrees W)


Methods & Sampling

Sampling and Analytical Methodology:
Three transects were laid out over the right, middle and left side of each reef. The diver recorded the substrate every 10 cm, yielding at least 50 fixed-point contacts for every reef. Corals and algae that are commonly observed are divided by genera. Porites spp are further distinguished as ridged, smooth or columnar.

Materials: transect tape and slates


Data Processing Description

Data Processing:
To obtain “TOTPOINTS”: Sum all species points from the reef.

NA- Not applicable (never recorded) to this data set
NR- Not recorded at certain times throughout the data set

BCO-DMO Processing Notes
- Generated from original file "LTR_PercentCoverPointContact.csv" contributed by Rebecca Atkins
- Parameter names edited to conform to BCO-DMO naming convention found at Choosing Parameter Name
- Any blank rows removed


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Data Files

File
LTR_PercentCoverPointContact.csv
(Comma Separated Values (.csv), 9.16 KB)
MD5:2e5c4403ea6de0163473bcce65eee473
Primary data file for dataset ID 645000

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Parameters

ParameterDescriptionUnits
DATE

Date Data Collected

DD-MMM-YYYY
Time_In

Time observer entered the water

HH:MM
Time_Out

Time observer exited the water

HH:MM
OBSERV

Initials of observer (JSW-Jada Simone White)

text
SITE

Location of reefs (TOW)

text
REEF

Reef # (two representative reefs chosen from each site) (1-192)

dimensionless
TREATMENT

Treatment (does not apply to this data set)

NA
PSPSMOO

Porites sp. (Smooth) (Range: 0 - TOTAL POINTS)

number of individuals
PSPRIDG

Porites sp. (Ridged) (Range: 0 - TOTAL POINTS)

number of individuals
PSPCOLUM

Porites sp. (Columnar) (Range: 0 - TOTAL POINTS)

number of individuals
PRUS

Porites rus (Range: 0 - TOTAL POINTS)

number of individuals
MONTIP

Montipora spp. (Range: 0 - TOTAL POINTS)

number of individuals
POC

Pocillopora spp. (Range: 0 - TOTAL POINTS)

number of individuals
ACROP

Acropora spp. (Range: 0 - TOTAL POINTS)

number of individuals
OTHCORAL

Total coverage of other live coral (Range: 0 - TOTAL POINTS)

number of individuals
TURF_steg

Stegastes sp. turf (does not apply to this dataset- see “TURF” below)

number of individuals
TURF_surg

Turf grazed by Acanthurids (does not apply to this dataset)

number of individuals
TURF

Stegastes sp. turf (Range: 0 - TOTAL POINTS)

number of individuals
TURBINAR

Turbinaria sp. (Range: 0 - TOTAL POINTS)

number of individuals
CCA

CCA (crustose coraline algae) (does not apply to this data set)

number of individuals
Bare

Bare substrate; including coralline algae (Range: 0 - TOTAL POINTS)

number of individuals
Bare_plus_CCA

(does not apply to this data set)

number of individuals
PIRREG

Porites irregularis? Unidentified branching species of coral common on reefs (Range: 0 - TOTAL POINTS)

number of individuals
LEPTASTR

Leptastrea spp. (Range: 0 - TOTAL POINTS)

number of individuals
PAVONA

Pavona cactus (Range: 0 - TOTAL POINTS)

number of individuals
FUNGIA

Fungia spp.

number of individuals
MUSSIDAE

Corals from the family Mussidae (difficult to i.d. to genera) (Range: 0 - TOTAL POINTS)

number of individuals
CAULERPA

Caulerpa spp. (Range: 0 - TOTAL POINTS)

number of individuals
DICTYOTA

Dictyota spp. (Range: 0 - TOTAL POINTS)

number of individuals
HALIMEDA

Halimeda spp. (Range: 0 - TOTAL POINTS)

number of individuals
PADINA

Padina spp. (Range: 0 - TOTAL POINTS)

number of individuals
CYANO

Various growth forms of cyanobacteria (Range: 0 - TOTAL POINTS)

number of individuals
GALAXAUR

Galaxaura sp. (Range: 0 - TOTAL POINTS)

number of individuals
AMANSIA

Amansia rhodantha (Range: 0 - TOTAL POINTS)

number of individuals
SPONGE

Fleshy grey sponge (Range: 0 - TOTAL POINTS)

number of individuals
VERMETID

Vermetid spp. (does not apply to this data set)

number of individuals
TRIDACNA

Tridacna Spp. (does not apply to this data set)

number of individuals
SPIROBRANCH

Spirobranch Spp. (does not apply to this data set)

number of individuals
CORALGAE

Coraline algae (Range: 0 - TOTAL POINTS)

number of individuals
OTHER

Other Corals (Range: 0 - TOTAL POINTS)

number of individuals
TOTPOINTS

Sum of FPC points measured for that reef (Total points)

number of individuals
NOTES

NOTES

text


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Instruments

Dataset-specific Instrument Name
Mask and snorkel
Generic Instrument Name
Diving Mask and Snorkel
Generic Instrument Description
A diving mask (also half mask, dive mask or scuba mask) is an item of diving equipment that allows underwater divers, including, scuba divers, free-divers, and snorkelers to see clearly underwater. Snorkel: A breathing apparatus for swimmers and surface divers that allows swimming or continuous use of a face mask without lifting the head to breathe, consisting of a tube that curves out of the mouth and extends above the surface of the water.

Dataset-specific Instrument Name
Transect Tape
Generic Instrument Name
Measuring Tape
Dataset-specific Description
Materials: transect tape and slates
Generic Instrument Description
A tape measure or measuring tape is a flexible ruler. It consists of a ribbon of cloth, plastic, fibre glass, or metal strip with linear-measurement markings. It is a common tool for measuring distance or length.

Dataset-specific Instrument Name
Slate
Generic Instrument Name
Underwater Writing Slate
Dataset-specific Description
Materials: transect tape and slates
Generic Instrument Description
Underwater writing slates and pencils are used to transport pre-dive plans underwater, to record facts whilst underwater and to aid communication with other divers.


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Deployments

Osenberg_et_al_Moorea

Website
Platform
Osenberg et al Moorea
Start Date
2003-05-19
End Date
2015-07-12


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Project Information

Cryptic density dependence: the effects of spatial, ontogenetic, and individual variation in reef fish (CDD_in_Reef_Fish)

Coverage: Moorea, French Polynesia (-17.48, -149.82)


Description from NSF award abstract:
Ecologists have long been interested in the factors that drive spatial and temporal variability in population density and structure. In marine reef systems, attention has focused on the role of settlement-the transition of pelagic larvae to a benthic stage-and on density-dependent processes affecting recently settled juveniles. Recent data suggest that co-variance in settlement and subsequent density-dependent survival can obscure the patterns of density dependence at larger scales, a phenomenon called cryptic density dependence. This research will explore the mechanisms that underlie the spatial covariance of settlement and site quality - a process that has received little attention in the standard paradigm. These mechanistic studies of cryptic density dependence will facilitate the development of new frameworks for fish population dynamics that incorporate larval ecology, habitat quality, density dependence, life history, and the patterns and implications of spatial covariance among these factors. More generally, the work provides a specific empirical context, and a general theoretical treatment, of cryptic heterogeneity (hidden individual variation in demographic rates).

Note: Drs. Craig W. Osenberg and Ben Bolker were at the University of Florida at the time the NSF award was granted. Dr. Osenberg moved to the University of Georgia during the summer of 2014 (current contact information). Dr. Bolker moved to McMaster University in 2010 (current contact information).



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Funding

Funding SourceAward
NSF Division of Ocean Sciences (NSF OCE)

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