Sulfide concentrations as a function of time from INSPIRE track 1 collected from 2013 to 2017 (INSPIRE Pyrite project)

Website: https://www.bco-dmo.org/dataset/684417
Data Type: experimental
Version: 1
Version Date: 2017-03-13

Project
» INSPIRE Track 1: Microbial Sulfur Metabolism and its Potential for Transforming the Growth of Epitaxial Solar Cell Absorbers (INSPIRE_Pyrite)
ContributorsAffiliationRole
Girguis, PeterHarvard UniversityPrincipal Investigator
Clarke, DavidHarvard UniversityCo-Principal Investigator
Picard, AudeHarvard UniversityContact
Ake, HannahWoods Hole Oceanographic Institution (WHOI BCO-DMO)BCO-DMO Data Manager

Abstract
Sulfide concentrations as a function of time from INSPIRE track 1 collected from 2013 to 2017 (INSPIRE Pyrite project)


Coverage

Temporal Extent: 2013 - 2017

Dataset Description

 Sulfide concentrations from INSPIRE track 1.

These data are associated with the paper: Picard A., et al., 2018


Methods & Sampling

Sulfide concentrations as a function of times in cultures of sulfate-reducing bacterium Desulfovibrio hydrothermalis AM13.


Data Processing Description

BCO-DMO Data Processing Notes:

- compiled multiple spreadsheets of sulfide concentrations into one table.
- replaced blank cells with nd.
- reformatted column names to comply with BCO-DMO standards.


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Data Files

File
sulfide_concentrations.csv
(Comma Separated Values (.csv), 7.96 KB)
MD5:fcceb757fe2dc0ee6fc8dfb84ab558dd
Primary data file for dataset ID 684417

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Related Publications

Picard, A., Gartman, A., Clarke, D. R., & Girguis, P. R. (2018). Sulfate-reducing bacteria influence the nucleation and growth of mackinawite and greigite. Geochimica et Cosmochimica Acta, 220, 367–384. doi:10.1016/j.gca.2017.10.006
Results

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Parameters

ParameterDescriptionUnits
experiment_type

Abiotic or biotic experiment

unitless
time

Time in hours

hours
sulfide_culture1

Sulfide concentrations as a function of time in cultures of AM13 with trace Fe(II)

micromolar (mM)
sulfide_culture2

Sulfide concentrations as a function of time in cultures of AM13 with trace Fe(II)

micromolar (mM)
sulfide_culture3

Sulfide concentrations as a function of time in cultures of AM13 with trace Fe(II)

micromolar (mM)
sulfide_culture1_Fe

Sulfide concentrations as a function of time in AM13 cultures containing 4 mM Fe(II)

micromolar (mM)
sulfide_culture2_Fe

Sulfide concentrations as a function of time in AM13 cultures containing 4 mM Fe(II)

micromolar (mM)
sulfide_culture3_Fe

Sulfide concentrations as a function of time in AM13 cultures containing 4 mM Fe(II)

micromolar (mM)
sulfide_culture4_Fe

Sulfide concentrations as a function of time in AM13 cultures containing 4 mM Fe(II)

micromolar (mM)
sulfide_control1_slow

Sulfide added as a function of time in the medium

micromolar (mM)
sulfide_control2_slow

Sulfide added as a function of time in the medium

micromolar (mM)
culture_medium

Description of culture medium

unitless


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Instruments

Dataset-specific Instrument Name
Microscope
Generic Instrument Name
Raman Microscope
Dataset-specific Description
Used to analyze cultures
Generic Instrument Description
The Raman microscope is a laser-based microscopic device used to perform Raman spectroscopy. The Raman microscope begins with a standard optical microscope, and adds an excitation laser, laser rejection filters, a spectrometer or monochromator, and an optical sensitive detector such as a charge-coupled device (CCD), or photomultiplier tube, (PMT). One example is the XploRA confocal Raman microscope (information from the manufacturer).


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Deployments

Girguis_2013

Website
Platform
lab Harvard
Start Date
2013-09-01
End Date
2017-08-01
Description
Peter Girguis' lab at Harvard University


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Project Information

INSPIRE Track 1: Microbial Sulfur Metabolism and its Potential for Transforming the Growth of Epitaxial Solar Cell Absorbers (INSPIRE_Pyrite)


This INSPIRE award is partially funded by Biological Oceanography Program in Division of Ocean Sciences, in the Directorate of Geosciences; the Electronic and Photonic Materials Program in the Division of Materials Research, Directorate of Mathematical and Physical Sciences.

A simple idea motivates this project: By characterizing the mechanisms underlying pyrite film deposition by subsurface microbes living at hydrothermal vents, can approaches be developed to controllably grow high-purity pyrite films that could be used to produce low-cost photovoltaic solar cells? Recent in situ studies at hydrothermal vents have found "subsurface" microbes associated with the deposition of large crystalline metal sulfides (up to 1.1 millimeters), including iron pyrite. In laboratory incubations, vent microbes specifically deposited pyrite (FeS2), devoid of Zn, Cu and other metals that were abundant in the liquid media. Abiotic incubations did not exhibit this specificity. The investigators hypothesize that, in situ, microbes deposit pyrite via a number of potential processes, including a physiological process called extracellular electron transfer (EET), wherein microbes shuttle electrons to/from minerals. In situ, EET-enabled microbes may use conductive minerals to electrically access oxidants, and deposit pyrite on these surfaces. Vents are thus natural bioelectrochemical cells, which grow metal sulfides via microbial and abiotic electrochemical processes, though the details and mechanisms remain to be determined. This project is aimed at elucidating the mechanisms underlying microbial FeS2 pyrite bio-deposition, and assessing how microbes might be used to deposit epitaxial films for solar cells absorbers. FeS2 pyrite has been identified as prospective low cost solar absorbers because of their abundance, suitable band-gap (~0.95 eV) and high optical absorbance. Microbial pyrite film deposition at lower temperatures (<100 C) might offer a radically new, low cost approach to creating large area PV solar cells. Nothing is currently known about the mechanisms underlying microbial pyrite growth, though the large crystal sizes suggest epitaxial deposition is favored over re-nucleation implying that, once nucleated, epitaxial growth can occur. A series of experiments using natural vent microbial communities and isolates will be conducted to determine: A) environmental factors that influence bio-deposition; B) potential molecular mechanisms; C) the microstructural and electrical properties of these films; and D) whether bio-deposition by single species or consortia yields films of highest purity, size and homogeneity.

The project is both highly-integrated and transformative. It is relevant to our understanding of microbial sulfur cycling, as little is known about how microbes mediate crystalline pyrite formation and the degree to which this influences sulfur isotope geochemistry. Molecular studies will be used to interrogate relevant microbial metabolic processes and constrain the possible mechanisms of pyrite film growth, which is critical to advancing our ability to grow FeS2 films for device applications. Understanding the effects of substrate crystallography and electrical conductivity on the growth morphology will further inform our knowledge of microbial pyrite deposition. Notably, this research differ from existing biomimetic approaches. The studies are not focused on crystal growth via tethered peptides or synthetic extracellular matrices. Rather, they aim to advance our understanding of natural biodeposition, use the insights gained to grow pyrite materials and devices.

 



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Funding

Funding SourceAward
NSF Division of Ocean Sciences (NSF OCE)

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