Contributors | Affiliation | Role |
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Girguis, Peter | Harvard University | Principal Investigator |
Clarke, David | Harvard University | Co-Principal Investigator |
Picard, Aude | Harvard University | Contact |
Ake, Hannah | Woods Hole Oceanographic Institution (WHOI BCO-DMO) | BCO-DMO Data Manager |
Sulfide concentrations from INSPIRE track 1.
These data are associated with the paper: Picard A., et al., 2018
Sulfide concentrations as a function of times in cultures of sulfate-reducing bacterium Desulfovibrio hydrothermalis AM13.
BCO-DMO Data Processing Notes:
- compiled multiple spreadsheets of sulfide concentrations into one table.
- replaced blank cells with nd.
- reformatted column names to comply with BCO-DMO standards.
File |
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sulfide_concentrations.csv (Comma Separated Values (.csv), 7.96 KB) MD5:fcceb757fe2dc0ee6fc8dfb84ab558dd Primary data file for dataset ID 684417 |
Parameter | Description | Units |
experiment_type | Abiotic or biotic experiment | unitless |
time | Time in hours | hours |
sulfide_culture1 | Sulfide concentrations as a function of time in cultures of AM13 with trace Fe(II) | micromolar (mM) |
sulfide_culture2 | Sulfide concentrations as a function of time in cultures of AM13 with trace Fe(II) | micromolar (mM) |
sulfide_culture3 | Sulfide concentrations as a function of time in cultures of AM13 with trace Fe(II) | micromolar (mM) |
sulfide_culture1_Fe | Sulfide concentrations as a function of time in AM13 cultures containing 4 mM Fe(II) | micromolar (mM) |
sulfide_culture2_Fe | Sulfide concentrations as a function of time in AM13 cultures containing 4 mM Fe(II) | micromolar (mM) |
sulfide_culture3_Fe | Sulfide concentrations as a function of time in AM13 cultures containing 4 mM Fe(II) | micromolar (mM) |
sulfide_culture4_Fe | Sulfide concentrations as a function of time in AM13 cultures containing 4 mM Fe(II) | micromolar (mM) |
sulfide_control1_slow | Sulfide added as a function of time in the medium | micromolar (mM) |
sulfide_control2_slow | Sulfide added as a function of time in the medium | micromolar (mM) |
culture_medium | Description of culture medium | unitless |
Dataset-specific Instrument Name | Microscope |
Generic Instrument Name | Raman Microscope |
Dataset-specific Description | Used to analyze cultures |
Generic Instrument Description | The Raman microscope is a laser-based microscopic device used to perform Raman spectroscopy. The Raman microscope begins with a standard optical microscope, and adds an excitation laser, laser rejection filters, a spectrometer or monochromator, and an optical sensitive detector such as a charge-coupled device (CCD), or photomultiplier tube, (PMT). One example is the XploRA confocal Raman microscope (information from the manufacturer). |
Website | |
Platform | lab Harvard |
Start Date | 2013-09-01 |
End Date | 2017-08-01 |
Description | Peter Girguis' lab at Harvard University |
This INSPIRE award is partially funded by Biological Oceanography Program in Division of Ocean Sciences, in the Directorate of Geosciences; the Electronic and Photonic Materials Program in the Division of Materials Research, Directorate of Mathematical and Physical Sciences.
A simple idea motivates this project: By characterizing the mechanisms underlying pyrite film deposition by subsurface microbes living at hydrothermal vents, can approaches be developed to controllably grow high-purity pyrite films that could be used to produce low-cost photovoltaic solar cells? Recent in situ studies at hydrothermal vents have found "subsurface" microbes associated with the deposition of large crystalline metal sulfides (up to 1.1 millimeters), including iron pyrite. In laboratory incubations, vent microbes specifically deposited pyrite (FeS2), devoid of Zn, Cu and other metals that were abundant in the liquid media. Abiotic incubations did not exhibit this specificity. The investigators hypothesize that, in situ, microbes deposit pyrite via a number of potential processes, including a physiological process called extracellular electron transfer (EET), wherein microbes shuttle electrons to/from minerals. In situ, EET-enabled microbes may use conductive minerals to electrically access oxidants, and deposit pyrite on these surfaces. Vents are thus natural bioelectrochemical cells, which grow metal sulfides via microbial and abiotic electrochemical processes, though the details and mechanisms remain to be determined. This project is aimed at elucidating the mechanisms underlying microbial FeS2 pyrite bio-deposition, and assessing how microbes might be used to deposit epitaxial films for solar cells absorbers. FeS2 pyrite has been identified as prospective low cost solar absorbers because of their abundance, suitable band-gap (~0.95 eV) and high optical absorbance. Microbial pyrite film deposition at lower temperatures (<100 C) might offer a radically new, low cost approach to creating large area PV solar cells. Nothing is currently known about the mechanisms underlying microbial pyrite growth, though the large crystal sizes suggest epitaxial deposition is favored over re-nucleation implying that, once nucleated, epitaxial growth can occur. A series of experiments using natural vent microbial communities and isolates will be conducted to determine: A) environmental factors that influence bio-deposition; B) potential molecular mechanisms; C) the microstructural and electrical properties of these films; and D) whether bio-deposition by single species or consortia yields films of highest purity, size and homogeneity.
The project is both highly-integrated and transformative. It is relevant to our understanding of microbial sulfur cycling, as little is known about how microbes mediate crystalline pyrite formation and the degree to which this influences sulfur isotope geochemistry. Molecular studies will be used to interrogate relevant microbial metabolic processes and constrain the possible mechanisms of pyrite film growth, which is critical to advancing our ability to grow FeS2 films for device applications. Understanding the effects of substrate crystallography and electrical conductivity on the growth morphology will further inform our knowledge of microbial pyrite deposition. Notably, this research differ from existing biomimetic approaches. The studies are not focused on crystal growth via tethered peptides or synthetic extracellular matrices. Rather, they aim to advance our understanding of natural biodeposition, use the insights gained to grow pyrite materials and devices.
Funding Source | Award |
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NSF Division of Ocean Sciences (NSF OCE) |