Contributors | Affiliation | Role |
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Altabet, Mark A. | University of Massachusetts Dartmouth SMAST (UMASSD-SMAST) | Principal Investigator |
McNeil, Craig L. | University of Washington Applied Physics Laboratory (UW APL) | Co-Principal Investigator |
D'Asaro, Eric | University of Washington Applied Physics Laboratory (UW APL) | Contact |
Rauch, Shannon | Woods Hole Oceanographic Institution (WHOI BCO-DMO) | BCO-DMO Data Manager |
Vertical profiles from the Mexican OMZ of N2 gas concentrations in excess of equilibrium values along with the isotopic composition of total N2, NO3- and NO2-.
Sampling at sea was done using a standard SeaBird CTD/Rosette system. Hydrographic data was processed using SeaBird software and standard procedures. O2 was measured by an SBE43 sensor and final data were calibrated against Winkler O2 determinations
NO3- and NO2- concentrations were measured in the laboratory on frozen samples using a SmartChem autoanalyzer using standard chemical methods
N2 excess were determined from N2/Ar ratios measured using the procedures described by Charoenpong et al. (2014) with the exception that the measurements were made at sea using a Pfieffer 400 series quadrupole mass spectrometer system. Data acquisition and initial data processing used custom LabView software. Biogenic N2 concentrations were determined by subtraction of estimated background excess N2 as described in Chang et al. (2012). The d15N of N2 was determined in the laboratory using similar methodology but using an IsoPrime Isotope Ratio Mass Spectrometer (IRMS) as described by Charoenpong et al. (2014) using IonVantage software.
The isotopic composition of nitrate and nitrite was determined on samples returned to the laboratory using procedures described by McIlvin and Casciotti (2011) and McIlvin and Altabet (2005). Samples for nitrate isotope analysis were preserved by mild acidification and addition of sulfamic acid to remove nitrite. Nitrite samples were preserved at high pH with NaOH to retain its d18O signature. An IsoPrime IRMS running IonVantage was used to make these measurements.
Final data reduction and organization was done using Microsoft Excel.
See above for data processing.
BCO-DMO processing:
- modified parameter names to conform with BCO-DMO naming conventions (replaced # with "num", replaced hyphens with underscores);
- re-formatted date to mm/dd/yyyy;
- re-formatted time to HH:MM:SS;
- added ISO date/time field using original date and time fields;
- replaced "#N/A" and blanks (missing data) with "nd";
- there were 12 rows where lon values were degrees and decimal mins (CTD 11F02; 107 53.218). Converted those to decimal degrees.
File |
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OMZ_N2.csv (Comma Separated Values (.csv), 96.55 KB) MD5:60d8d1348f0c364bab02020cb03475d2 Primary data file for dataset ID 705567 |
Parameter | Description | Units |
cruise | Cruise identifier | unitless |
ctd_num | CTD cast identifier | unitless |
date | Date formatted as dd/mm/yyyy | unitless |
btl_num | Niskin bottle number | unitless |
lat | Latitude | decimal degrees |
lon | Longitude | decimal degrees |
time_local | Local ship time formatted as HH:MM:SS | unitless |
ISO_DateTime_Local | Date and time formatted to ISO 8601 standard: yyyy-mm-ddTHH:MM:SS | unitless |
depth_ctd | CTD depth | meters |
pressure_ctd | CTD pressure | decibars (dB) |
in_situ_temp_ctd | CTD in situ temperature | degrees Celsius |
salinity_ctd | CTD salinity | unitless |
calibrated_ctd_O2 | Winkler calibrated CTD oxygen | micromoles per kilogram (umol/kg) |
sigma_theta | Density anomaly | kilograms per cubic meter - 1000 (kg/m3 - 1000) |
NO3 | Nitrate concentration | micromoles per kilogram (umol/kg) |
NO2 | Nitrite concentration | micromoles per kilogram (umol/kg) |
N2_excess | N2 concentration in excess of equilibrium with atmosphere | micromoles per kilogram (umol/kg) |
stdev_N2_excess | Precision of above | micromoles per kilogram (umol/kg) |
bio_N2 | biogenic N2 concentration | micromoles per kilogram (umol/kg) |
d15N2 | Difference in d15N of total N2 relative to equilibrium values | per mil (‰) |
stdev_d15N2_anomaly | Precision of above | per mil (‰) |
d15NO3 | d15N of nitrate | per mil (‰) |
d18O_NO3 | d18O of nitrate | per mil (‰) |
d15NO2 | d15N of nitrite | per mil (‰) |
d18O_NO2 | d18O of nitrite | per mil (‰) |
Dataset-specific Instrument Name | SeaBird CTD/Rosette |
Generic Instrument Name | CTD Sea-Bird |
Dataset-specific Description | Sampling at sea was done using a standard SeaBird CTD/Rosette system. |
Generic Instrument Description | Conductivity, Temperature, Depth (CTD) sensor package from SeaBird Electronics, no specific unit identified. This instrument designation is used when specific make and model are not known. See also other SeaBird instruments listed under CTD. More information from Sea-Bird Electronics. |
Dataset-specific Instrument Name | SmartChem autoanalyzer |
Generic Instrument Name | Discrete Analyzer |
Dataset-specific Description | NO3- and NO2- concentrations were measured in the laboratory on frozen samples using a SmartChem autoanalyzer using standard chemical methods |
Generic Instrument Description | Discrete analyzers utilize discrete reaction wells to mix and develop the colorimetric reaction, allowing for a wide variety of assays to be performed from one sample. These instruments are ideal for drinking water, wastewater, soil testing, environmental and university or research applications where multiple assays and high throughput are required. |
Dataset-specific Instrument Name | IsoPrime Isotope Ratio Mass Spectrometer (IRMS) |
Generic Instrument Name | Isotope-ratio Mass Spectrometer |
Dataset-specific Description | The d15N of N2 was determined in the laboratory using an IsoPrime Isotope Ratio Mass Spectrometer (IRMS) as described by Charoenpong et al. (2014) using IonVantage software. An IsoPrime IRMS running IonVantage was also used to make measurements of the isotopic composition of nitrate and nitrite. |
Generic Instrument Description | The Isotope-ratio Mass Spectrometer is a particular type of mass spectrometer used to measure the relative abundance of isotopes in a given sample (e.g. VG Prism II Isotope Ratio Mass-Spectrometer). |
Dataset-specific Instrument Name | Pfieffer 400 series quadrupole mass spectrometer |
Generic Instrument Name | Mass Spectrometer |
Dataset-specific Description | N2 excess were determined from N2/Ar ratios measured using the procedures described by Charoenpong et al. (2014) with the exception that the measurements were made at sea using a Pfieffer 400 series quadrupole mass spectrometer system. |
Generic Instrument Description | General term for instruments used to measure the mass-to-charge ratio of ions; generally used to find the composition of a sample by generating a mass spectrum representing the masses of sample components. |
Dataset-specific Instrument Name | SBE43 sensor |
Generic Instrument Name | Sea-Bird SBE 43 Dissolved Oxygen Sensor |
Dataset-specific Description | O2 was measured by an SBE43 sensor and final data were calibrated against Winkler O2 determinations |
Generic Instrument Description | The Sea-Bird SBE 43 dissolved oxygen sensor is a redesign of the Clark polarographic membrane type of dissolved oxygen sensors. more information from Sea-Bird Electronics |
Website | |
Platform | R/V New Horizon |
Report | |
Start Date | 2014-05-10 |
End Date | 2014-06-08 |
Description | Oxygen Minimum Zone Microbial Biogeochemistry Expedition 2 (OMZoMBiE 2)
Cruise Track (PDF)
Cruise information and original data are available from R2R: https://www.rvdata.us/search/cruise/NH1410 |
NSF Award Abstract:
Intense oxygen minimum zones (OMZ) of the world's oceans, though constituting a small fraction of total oceanic volume, host critical biogeochemical processes and are central to understanding the ocean's N cycle and its biogeochemical and isotopic signatures. OMZ's are sites for a large portion of marine combined N loss to N2 (25 to 50%) and dominate the ocean N isotope budget through cogeneration of 15N and 18O enriched NO3 -. Major outstanding issues include the magnitude of this N sink, the stoichiometry between NO3 - loss and the production of biogenic N2, the microbial pathways leading to N2 production, as well as the interaction between these OMZ processes and the surface export of organic matter as well as physical circulation.
The PI's request funding to develop a new, in situ, autonomous tool for studying N loss in OMZ's. It will allow observation of variability over a range in temporal and spatial scales that are critical for understanding controlling processes and better estimating the magnitude of N-loss. The sustained deployments possible with autonomous platforms will be critical for detecting any response of OMZ's to climate change.
Broader Impacts: Nitrogen is often the limiting nutrient for biological production in the oceans, and the current global marine nitrogen balance has been in much debate due to a number of uncertainties and questions. A successful development of this proposed sensor-float package may help in resolving some of the important questions on the spatial and temporal variabilities of the OMZs. In turn, such knowledge is essential in assessing the global nitrogen balance in the current and future oceans. This proposed project would involve active participation of undergraduates, graduates and postdocs, as well as the training of a K-12 science teacher. This project would also foster collaboration with international researchers. The PI's have partnered with Ocean Explorium at New Bedford Seaport to provide an educational outreach component designed to aid teacher development and create a field trip program for teachers in the south coast of Massachusetts. The proposal will support post-doc, graduate and undergraduate students.
Funding Source | Award |
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NSF Division of Ocean Sciences (NSF OCE) | |
NSF Division of Ocean Sciences (NSF OCE) |