Dataset: McMurdo Spiophanes beds 16s V4 region community composition from sediment cores at McMurdo Station, Antarctia on Sept 9th, 2012 (McMurdo Benthos project)

ValidatedFinal no updates expectedVersion (2017-10-10)Dataset Type:Other Field Results

Principal Investigator, Contact: Andrew Thurber (Oregon State University)

BCO-DMO Data Manager: Amber D. York (Woods Hole Oceanographic Institution)

Project: Microbe - Metazoan Interactions in an Antarctic Infaunal Community (McMurdo Benthos)

Cite Dataset

This dataset includes accession numbers for raw genetic sequence reads from sediment cores of McMurdo Station Spiophanes beds to investigate 16s V4 region community composition.

The accession numbers in this dataset are part of the BioProject titled  16S Amplicon Data from an Antarctic Cold Seep (PRJNA387720) at the National Center for Biotechnology Information (NCBI).  

Sediment cores at McMurdo Station were taken at ”The Jetty”, Hutt Point, Ross Sea, Antarctica at a depth of 20m.

Related Datasets

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Related Publications

Methods
16S Illumina Aplicon Protocol (Earth Microbiome Project) http://www.earthmicrobiome.org/protocols-and-standards/16s/
Methods
Apprill, A., McNally, S., Parsons, R., & Weber, L. (2015). Minor revision to V4 region SSU rRNA 806R gene primer greatly increases detection of SAR11 bacterioplankton. Aquatic Microbial Ecology, 75(2), 129–137. doi:10.3354/ame01753
Methods
Caporaso, J. G., Lauber, C. L., Walters, W. A., Berg-Lyons, D., Lozupone, C. A., Turnbaugh, P. J., … Knight, R. (2010). Global patterns of 16S rRNA diversity at a depth of millions of sequences per sample. Proceedings of the National Academy of Sciences, 108(Supplement_1), 4516–4522. doi:10.1073/pnas.1000080107

Thurber, A. (2017) McMurdo Spiophanes beds 16s V4 region community composition from sediment cores at McMurdo Station, Antarctia on Sept 9th, 2012 (McMurdo Benthos project). Biological and Chemical Oceanography Data Management Office (BCO-DMO). (Version ) Version Date 2017-10-10 [if applicable, indicate subset used]. http://lod.bco-dmo.org/id/dataset/716443 [access date]

Terms of Use

This dataset is licensed under Creative Commons Attribution 4.0.


If you wish to use this dataset, it is highly recommended that you contact the original principal investigators (PI). Should the relevant PI be unavailable, please contact BCO-DMO (info@bco-dmo.org) for additional guidance. For general guidance please see the BCO-DMO Terms of Use document.

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