Dataset: Sample accession numbers for raw metagenome and metatranscriptome Illumina HiSeq 2500 sequencing from an Fe mat sampled during cruise TN293 to Loihi Seamount, Hawaii on 03/25/2013

ValidatedFinal no updates expectedVersion 20 November 2017 (2017-11-20)Dataset Type:Other Field Results

Principal Investigator: Clara Chan (University of Delaware)

BCO-DMO Data Manager: Shannon Rauch (Woods Hole Oceanographic Institution)

Project: Ecology of microbial mats at seamount associated Fe-rich hydrothermal vent systems (Ecology of Vent Mats)

Cite Dataset

This dataset includes accession numbers and links to NCBI SRA for metagenomic and metatranscriptomic reads from BioProject PRJNA412510. Samples were collected during the R/V Thomas G. Thompson cruise TN293 at Loihi Seamount. A single Fe mat was sampled (J2-674-BM1-C123456) at Pohaku (Mkr #57), with syringe J2-674-BM1-C3 used for metagenomic sequencing and syringe J2-674-BM1-C6 used for metatranscriptomic sequencing. Latitude: 18.901418 N; Longitude: 155.258191 W; Depth: 1179.43 meters below sea level.

Further details on sequencing are available on the NCBI BioProject page.

Related Datasets

No Related Datasets

Related Publications

Methods
Breier, J. A., Gomez-Ibanez, D., Reddington, E., Huber, J. A., & Emerson, D. (2012). A precision multi-sampler for deep-sea hydrothermal microbial mat studies. Deep Sea Research Part I: Oceanographic Research Papers, 70, 83–90. doi:10.1016/j.dsr.2012.10.006
Methods
Chan, C., McAllister, S. M., Garber, A., Hallahan, B. J., & Rozovsky, S. (2018). Fe oxidation by a fused cytochrome-porin common to diverse Fe-oxidizing bacteria. doi:10.1101/228056

Chan, C. (2017) Sample accession numbers for raw metagenome and metatranscriptome Illumina HiSeq 2500 sequencing from an Fe mat sampled during cruise TN293 to Loihi Seamount, Hawaii on 03/25/2013. Biological and Chemical Oceanography Data Management Office (BCO-DMO). (Version 20 November 2017) Version Date 2017-11-20 [if applicable, indicate subset used]. http://lod.bco-dmo.org/id/dataset/719770 [access date]

Terms of Use

This dataset is licensed under Creative Commons Attribution 4.0.


If you wish to use this dataset, it is highly recommended that you contact the original principal investigators (PI). Should the relevant PI be unavailable, please contact BCO-DMO (info@bco-dmo.org) for additional guidance. For general guidance please see the BCO-DMO Terms of Use document.

NSF Logo©2020 Biological and Chemical Oceanography Data Management Office.
Funded by the U.S. National Science Foundation