Dataset: Transcriptional profile of marine bacterium Ruegeria pomeroyi in a three-member co-culture study

ValidatedFinal no updates expectedDOI: 10.1575/1912/bco-dmo.719970.1Version 1 (2017-11-29)Dataset Type:experimental

Principal Investigator: Mary Ann Moran (University of Georgia)

BCO-DMO Data Manager: Shannon Rauch (Woods Hole Oceanographic Institution)

Program: Dimensions of Biodiversity (Dimensions of Biodiversity)

Project: Bacterial Taxa that Control Sulfur Flux from the Ocean to the Atmosphere (OceanSulfurFluxBact)

Abstract

Transcriptional profile of marine bacterium Ruegeria pomeroyi in a three-member co-culture study. This dataset contains the processed, QC'ed, normalized sequence data. The full raw data file is deposited in the NCBI BioProject database under accession PRJNA381627.

Cite Dataset

Transcriptional profile of marine bacterium Ruegeria pomeroyi in a three-member co-culture study. This dataset contains the processed, QC'ed, normalized sequence data. The full raw data file is deposited in the NCBI BioProject database under accession PRJNA381627.

These data are published in table 2 of Landa et al., 2017, ISME Journal, in press.

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Related Publications

Methods
Anders, S., Pyl, P. T., & Huber, W. (2014). HTSeq--a Python framework to work with high-throughput sequencing data. Bioinformatics, 31(2), 166–169. doi:10.1093/bioinformatics/btu638
Methods
Love, M. I., Huber, W., & Anders, S. (2014). Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2. Genome Biology, 15(12). doi:10.1186/s13059-014-0550-8
Methods
Stewart, F. J., Ottesen, E. A., & DeLong, E. F. (2010). Development and quantitative analyses of a universal rRNA-subtraction protocol for microbial metatranscriptomics. The ISME Journal, 4(7), 896–907. doi:10.1038/ismej.2010.18
Software
Langmead, B., & Salzberg, S. L. (2012). Fast gapped-read alignment with Bowtie 2. Nature Methods, 9(4), 357–359. doi:10.1038/nmeth.1923

Moran, M. A. (2017) Transcriptional profile of marine bacterium Ruegeria pomeroyi in a three-member co-culture study. Biological and Chemical Oceanography Data Management Office (BCO-DMO). (Version 1) Version Date 2017-11-29 [if applicable, indicate subset used]. doi:10.1575/1912/bco-dmo.719970.1 [access date]

Terms of Use

This dataset is licensed under Creative Commons Attribution 4.0.


If you wish to use this dataset, it is highly recommended that you contact the original principal investigators (PI). Should the relevant PI be unavailable, please contact BCO-DMO (info@bco-dmo.org) for additional guidance. For general guidance please see the BCO-DMO Terms of Use document.

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Funded by the U.S. National Science Foundation