Dataset: Metatranscriptome sequence NCBI accessions from samples collected during the SIMCO 1 & 2 incubation experiments, July & Oct 2014

ValidatedFinal no updates expectedVersion 1.1 (2025-02-25)Dataset Type:experimental

Principal Investigator: Mary Ann Moran (University of Georgia)

BCO-DMO Data Manager: Nancy Copley (Woods Hole Oceanographic Institution)

Project: High Resolution Linkages Between DOC Turnover and Bacterioplankton in a Coastal Ocean (SIMCO)

Abstract

This dataset includes metatranscriptome sequence accessions from samples collected during the SIMCO 1 & 2 incubation experiments, July & Oct 2014, with links to the NCBI SRA pages.

Cite Dataset

This dataset includes metatranscriptome sequence accessions and links to the NCBI SRA pages.

Related Datasets

No Related Datasets

Related Publications

Methods, Results
Vorobev, A., Sharma, S., Yu, M., Lee, J., Washington, B. J., Whitman, W. B., … Moran, M. A. (2018). Identifying labile DOM components in a coastal ocean through depleted bacterial transcripts and chemical signals. Environmental Microbiology, 20(8), 3012–3030. doi:10.1111/1462-2920.14344
Methods
Corilo, Y. (2015) PetroOrg Software; Florida State University: Tallahassee, FL, 2014.
Methods
Dittmar, T., Koch, B., Hertkorn, N., & Kattner, G. (2008). A simple and efficient method for the solid-phase extraction of dissolved organic matter (SPE-DOM) from seawater. Limnology and Oceanography: Methods, 6(6), 230–235. doi:10.4319/lom.2008.6.230
Methods
Gifford, S. M., Sharma, S., Booth, M., & Moran, M. A. (2013). Expression patterns reveal niche diversification in a marine microbial assemblage. The ISME Journal, 7(2), 281–298. doi:10.1038/ismej.2012.96
Methods
Gifford, S. M., Sharma, S., Rinta-Kanto, J. M., & Moran, M. A. (2011). Quantitative analysis of a deeply sequenced marine microbial metatranscriptome. The ISME Journal, 5(3), 461–472. doi:10.1038/ismej.2010.141

Moran, M. (2025) Metatranscriptome sequence NCBI accessions from samples collected during the SIMCO 1 & 2 incubation experiments, July & Oct 2014. Biological and Chemical Oceanography Data Management Office (BCO-DMO). (Version 1.1) Version Date 2025-02-25 [if applicable, indicate subset used]. http://lod.bco-dmo.org/id/dataset/735723 [access date]

Terms of Use

This dataset is licensed under Creative Commons Attribution 4.0.


If you wish to use this dataset, it is highly recommended that you contact the original principal investigators (PI). Should the relevant PI be unavailable, please contact BCO-DMO (info@bco-dmo.org) for additional guidance. For general guidance please see the BCO-DMO Terms of Use document.

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Funded by the U.S. National Science Foundation