Dataset: ProteOMZ identified protein sequences

Name: FASTA file of identified protein sequences from the R/V Falkor cruise 160115 for the ProteOMZ expedition in the Central Pacific during 2016
Published: 2019-02-15
Keywords: oceans

Cite This Dataset

DOI:10.26008/1912/bco-dmo.737611.3

Spatial Extent: N:17.4465 E:-139.1089 S:-0.4708 W:-157.3022

Temporal Extent: 2016-01-19 - 2016-01-28

Project:

The ProteOMZ Expedition: Investigating Life Without Oxygen in the Pacific Ocean (ProteOMZ (Proteomics in an Oxygen Minimum Zone))

Principal Investigator:

Mak A. Saito (Woods Hole Oceanographic Institution, WHOI)

BCO-DMO Data Manager:

Hannah Ake (Woods Hole Oceanographic Institution, WHOI BCO-DMO)

Amber D. York (Woods Hole Oceanographic Institution, WHOI BCO-DMO)

Version:

Version Date:

2019-02-15

Restricted:

Validated:

Yes

Current State:

Final no updates expected

FASTA file of identified protein sequences from the R/V Falkor cruise 160115 for the ProteOMZ expedition in the Central Pacific during 2016

Abstract:

FASTA file of protein identifications from FK160115 in 2016. Individual sequences of all proteins identified in the ProteOMZ Protein dataset (737630, see "Related Datasets" section). Each entry begins with a “> “ and is followed by the ProteinIdentifier.

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Archival Copy

Version Date	Archive	Persistent Identifier (PID)	Date PID Issued
2019-02-15	Marine Biological Laboratory/Woods Hole Oceanographic Institution Library (MBLWHOI DLA)	10.26008/1912/bco-dmo.737611.3	2024-11-06

Description

These data are part of the Ocean Protein Portal "ProteOMZ" dataset (https://proteinportal.whoi.edu/; Saito et al., 2019).

Data Processing Description

The raw mass spectra files were searched against SEQUEST within Proteome Discoverer v2.2 software. Processed files were then loaded into Proteome Software and protein and peptide reports as well as and fasta files were exported. The files were modified slightly to map to the Protein Portal data model for submission to BCO-DMO.

BCO-DMO Processing

originally submitted file was attached to this dataset, no modifications.

BCO-DMO Data Manager Notes:
* data version 1: 2018-05-25 replaced by data version 2: 2019-01-02 which is a new version of the .fasta file which includes more proteins not present in the previous version.

dataset version 3 (2019-02-15):
* Fasta file ProteOMZ_identified_Metzyme_ORFs.fasta attached as the current version corresponding to the Ocean Protein Portal database dataset "ProteOMZ" v3 (file version 2019-02-15).

Data Files

File
Protein sequences filename: ProteOMZ_identified_Metzyme_ORFs.fasta (FASTA, 23.75 MB) MD5:ee714a50c2ee294b6d54f61779dfebd9 Primary data file for dataset 737611 v3.