Dataset: Goby genotypes

Name: Cytochrome b and radloci genotype identification data from fish sampled in the Belizean Barrier Reef in 2014.
Published: 2018-06-18
Keywords: oceans

Cite This Dataset

DOI:10.1575/1912/bco-dmo.738714.1

Spatial Extent: N:18.3955 E:-87.1362 S:16.0028 W:-88.6743

Temporal Extent: 2014 - 2014

Project:

An Integrative Investigation of Population Connectivity Using a Coral Reef Fish (Elacatinus Dispersal I)

Principal Investigator:

Peter Buston (Boston University, BU)

Co-Principal Investigator:

Cassidy C. D'Aloia (Woods Hole Oceanographic Institution, WHOI)

Contact:

Peter Buston (Boston University, BU)

BCO-DMO Data Manager:

Hannah Ake (Woods Hole Oceanographic Institution, WHOI BCO-DMO)

Version:

Version Date:

2018-06-18

Restricted:

Validated:

Yes

Current State:

Final no updates expected

Cytochrome b and radloci genotype identification data from fish sampled in the Belizean Barrier Reef in 2014.

Abstract:

Cytochrome b and radloci genotype identification data from fish sampled in the Belizean Barrier Reef in 2014.

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Archival Copy

Version Date	Archive	Persistent Identifier	Date Assigned
2018-06-18	Marine Biological Laboratory/Woods Hole Oceanographic Institution Library (MBLWHOI DLA)	10.1575/1912/bco-dmo.738714.1	2019-06-07

Description

Mitochondiral DNA cytochrome b and radloci genotype identification data from fish sampled in the Belizean Barrier Reef in 2014. Each of the 59 loci appear in two separate columns for each allele except for the mitochondrial DNA, which only appears in one column because there is only one allele at the locus.

Methods & Sampling

We collected tissue samples from 1126 Elacatinus lori individuals at 39 locations across the Belize barrier reef for population genetic analyses. We marked the location of each collection site with a Garmin GPSMAP 76Cx unit. Individuals were caught with slurp guns and we took a small clip from the caudal fin using scissors. All tissue samples were store in 95% EtOH. Genetic data were collected based on standard DNA extractions and a targeted amplicon sequencing approach. Details on all methods can be found in D’Aloia et al. (2017), Conservation Genetics.

Data Processing Description

To generate the two genotype files, we used a custom Perl script that was specifically developed to run on Cornell University’s servers. All script details and filtering steps are described in detail in D’Aloia et al. 2017, Conservation Genetics. Missing data from genotype columns is denoted by 0.

BCO-DMO Data Processing Notes:

-Added decimal degree lat and lon to data
-Added date to data
-Merged cytb and radloci data into one spreadsheet

Data Files

File
goby_genotypes.csv (Comma Separated Values (.csv), 323.76 KB) MD5:7a82fa721761f156c1cdd29c11fa8239 Primary data file for dataset ID 738714

More Information about this dataset

Funding Sources

Funding Source	Award Number
NSF Division of Ocean Sciences	OCE-1260424

Deployments

Deployment	Synonyms	Start Date	Platform	Investigator
Belize_2010			lab Buston	Peter Buston (Principal Investigator)	data info

Instruments

GPS receiver

Supplied Name: GPSMAP 76Cx (Garmin)

Supplied Description:

Used to collect GPS data

Instrument Type

Generic Name: GPS receiver

Generic Description:

Acquires satellite signals and tracks your location.

This term has been deprecated. Use instead: https://www.bco-dmo.org/instrument/560

Parameters

Date and time formats are described in python strftime() syntax.

Supplied Name	Supplied description	Supplied Units	Standard Name
year	Year of sampling	unitless	year
date	Date of sampling; yyyy/mm/dd	unitless	date
individual_id	Unique ID assigned to the fish	unitless	sample
site_id	Location collected	unitless	site
lat	Latitude	decimal degrees	lat
lon	Longitude	decimal degrees	lon
Goby32_a	Genotype data for an individual fish two alleles per locus. Each of the 59 loci have two columns: a and b. This column contains unique genotype IDs.	unitless	sample
Goby32_b	Genotype data for an individual fish two alleles per locus. Each of the 59 loci have two columns: a and b. This column contains unique genotype IDs.	unitless	sample
Goby43_a	Genotype data for an individual fish two alleles per locus. Each of the 59 loci have two columns: a and b. This column contains unique genotype IDs.	unitless	sample
Goby43_b	Genotype data for an individual fish two alleles per locus. Each of the 59 loci have two columns: a and b. This column contains unique genotype IDs.	unitless	sample
Goby52_a	Genotype data for an individual fish two alleles per locus. Each of the 59 loci have two columns: a and b. This column contains unique genotype IDs.	unitless	sample
Goby52_b	Genotype data for an individual fish two alleles per locus. Each of the 59 loci have two columns: a and b. This column contains unique genotype IDs.	unitless	sample
Goby55_a	Genotype data for an individual fish two alleles per locus. Each of the 59 loci have two columns: a and b. This column contains unique genotype IDs.	unitless	sample
Goby55_b	Genotype data for an individual fish two alleles per locus. Each of the 59 loci have two columns: a and b. This column contains unique genotype IDs.	unitless	sample
Goby83_a	Genotype data for an individual fish two alleles per locus. Each of the 59 loci have two columns: a and b. This column contains unique genotype IDs.	unitless	sample
Goby83_b	Genotype data for an individual fish two alleles per locus. Each of the 59 loci have two columns: a and b. This column contains unique genotype IDs.	unitless	sample
Goby90_a	Genotype data for an individual fish two alleles per locus. Each of the 59 loci have two columns: a and b. This column contains unique genotype IDs.	unitless	sample
Goby90_b	Genotype data for an individual fish two alleles per locus. Each of the 59 loci have two columns: a and b. This column contains unique genotype IDs.	unitless	sample
Goby92_a	Genotype data for an individual fish two alleles per locus. Each of the 59 loci have two columns: a and b. This column contains unique genotype IDs.	unitless	sample
Goby92_b	Genotype data for an individual fish two alleles per locus. Each of the 59 loci have two columns: a and b. This column contains unique genotype IDs.	unitless	sample
Goby95_a	Genotype data for an individual fish two alleles per locus. Each of the 59 loci have two columns: a and b. This column contains unique genotype IDs.	unitless	sample
Goby95_b	Genotype data for an individual fish two alleles per locus. Each of the 59 loci have two columns: a and b. This column contains unique genotype IDs.	unitless	sample
Goby100_a	Genotype data for an individual fish two alleles per locus. Each of the 59 loci have two columns: a and b. This column contains unique genotype IDs.	unitless	sample
Goby100_b	Genotype data for an individual fish two alleles per locus. Each of the 59 loci have two columns: a and b. This column contains unique genotype IDs.	unitless	sample
Goby113_a	Genotype data for an individual fish two alleles per locus. Each of the 59 loci have two columns: a and b. This column contains unique genotype IDs.	unitless	sample
Goby113_b	Genotype data for an individual fish two alleles per locus. Each of the 59 loci have two columns: a and b. This column contains unique genotype IDs.	unitless	sample
Goby152_a	Genotype data for an individual fish two alleles per locus. Each of the 59 loci have two columns: a and b. This column contains unique genotype IDs.	unitless	sample
Goby152_b	Genotype data for an individual fish two alleles per locus. Each of the 59 loci have two columns: a and b. This column contains unique genotype IDs.	unitless	sample
Goby170_a	Genotype data for an individual fish two alleles per locus. Each of the 59 loci have two columns: a and b. This column contains unique genotype IDs.	unitless	sample
Goby170_b	Genotype data for an individual fish two alleles per locus. Each of the 59 loci have two columns: a and b. This column contains unique genotype IDs.	unitless	sample
Goby177_a	Genotype data for an individual fish two alleles per locus. Each of the 59 loci have two columns: a and b. This column contains unique genotype IDs.	unitless	sample
Goby177_b	Genotype data for an individual fish two alleles per locus. Each of the 59 loci have two columns: a and b. This column contains unique genotype IDs.	unitless	sample
Goby183_a	Genotype data for an individual fish two alleles per locus. Each of the 59 loci have two columns: a and b. This column contains unique genotype IDs.	unitless	sample
Goby183_b	Genotype data for an individual fish two alleles per locus. Each of the 59 loci have two columns: a and b. This column contains unique genotype IDs.	unitless	sample
Goby198_a	Genotype data for an individual fish two alleles per locus. Each of the 59 loci have two columns: a and b. This column contains unique genotype IDs.	unitless	sample
Goby198_b	Genotype data for an individual fish two alleles per locus. Each of the 59 loci have two columns: a and b. This column contains unique genotype IDs.	unitless	sample
Goby205_a	Genotype data for an individual fish two alleles per locus. Each of the 59 loci have two columns: a and b. This column contains unique genotype IDs.	unitless	sample
Goby205_b	Genotype data for an individual fish two alleles per locus. Each of the 59 loci have two columns: a and b. This column contains unique genotype IDs.	unitless	sample
Goby216_a	Genotype data for an individual fish two alleles per locus. Each of the 59 loci have two columns: a and b. This column contains unique genotype IDs.	unitless	sample
Goby216_b	Genotype data for an individual fish two alleles per locus. Each of the 59 loci have two columns: a and b. This column contains unique genotype IDs.	unitless	sample
Goby231_a	Genotype data for an individual fish two alleles per locus. Each of the 59 loci have two columns: a and b. This column contains unique genotype IDs.	unitless	sample
Goby231_b	Genotype data for an individual fish two alleles per locus. Each of the 59 loci have two columns: a and b. This column contains unique genotype IDs.	unitless	sample
Goby259_a	Genotype data for an individual fish two alleles per locus. Each of the 59 loci have two columns: a and b. This column contains unique genotype IDs.	unitless	sample
Goby259_b	Genotype data for an individual fish two alleles per locus. Each of the 59 loci have two columns: a and b. This column contains unique genotype IDs.	unitless	sample
Goby272_a	Genotype data for an individual fish two alleles per locus. Each of the 59 loci have two columns: a and b. This column contains unique genotype IDs.	unitless	sample
Goby272_b	Genotype data for an individual fish two alleles per locus. Each of the 59 loci have two columns: a and b. This column contains unique genotype IDs.	unitless	sample
Goby285_a	Genotype data for an individual fish two alleles per locus. Each of the 59 loci have two columns: a and b. This column contains unique genotype IDs.	unitless	sample
Goby285_b	Genotype data for an individual fish two alleles per locus. Each of the 59 loci have two columns: a and b. This column contains unique genotype IDs.	unitless	sample
Goby289_a	Genotype data for an individual fish two alleles per locus. Each of the 59 loci have two columns: a and b. This column contains unique genotype IDs.	unitless	sample
Goby289_b	Genotype data for an individual fish two alleles per locus. Each of the 59 loci have two columns: a and b. This column contains unique genotype IDs.	unitless	sample
Goby294_a	Genotype data for an individual fish two alleles per locus. Each of the 59 loci have two columns: a and b. This column contains unique genotype IDs.	unitless	sample
Goby294_b	Genotype data for an individual fish two alleles per locus. Each of the 59 loci have two columns: a and b. This column contains unique genotype IDs.	unitless	sample
Goby307_a	Genotype data for an individual fish two alleles per locus. Each of the 59 loci have two columns: a and b. This column contains unique genotype IDs.	unitless	sample
Goby307_b	Genotype data for an individual fish two alleles per locus. Each of the 59 loci have two columns: a and b. This column contains unique genotype IDs.	unitless	sample
Goby342_a	Genotype data for an individual fish two alleles per locus. Each of the 59 loci have two columns: a and b. This column contains unique genotype IDs.	unitless	sample
Goby342_b	Genotype data for an individual fish two alleles per locus. Each of the 59 loci have two columns: a and b. This column contains unique genotype IDs.	unitless	sample
Goby26_a	Genotype data for an individual fish two alleles per locus. Each of the 59 loci have two columns: a and b. This column contains unique genotype IDs.	unitless	sample
Goby26_b	Genotype data for an individual fish two alleles per locus. Each of the 59 loci have two columns: a and b. This column contains unique genotype IDs.	unitless	sample
Goby53_a	Genotype data for an individual fish two alleles per locus. Each of the 59 loci have two columns: a and b. This column contains unique genotype IDs.	unitless	sample
Goby53_b	Genotype data for an individual fish two alleles per locus. Each of the 59 loci have two columns: a and b. This column contains unique genotype IDs.	unitless	sample
Goby56_a	Genotype data for an individual fish two alleles per locus. Each of the 59 loci have two columns: a and b. This column contains unique genotype IDs.	unitless	sample
Goby56_b	Genotype data for an individual fish two alleles per locus. Each of the 59 loci have two columns: a and b. This column contains unique genotype IDs.	unitless	sample
Goby59_a	Genotype data for an individual fish two alleles per locus. Each of the 59 loci have two columns: a and b. This column contains unique genotype IDs.	unitless	sample
Goby59_b	Genotype data for an individual fish two alleles per locus. Each of the 59 loci have two columns: a and b. This column contains unique genotype IDs.	unitless	sample
Goby70_a	Genotype data for an individual fish two alleles per locus. Each of the 59 loci have two columns: a and b. This column contains unique genotype IDs.	unitless	sample
Goby70_b	Genotype data for an individual fish two alleles per locus. Each of the 59 loci have two columns: a and b. This column contains unique genotype IDs.	unitless	sample
Goby77_a	Genotype data for an individual fish two alleles per locus. Each of the 59 loci have two columns: a and b. This column contains unique genotype IDs.	unitless	sample
Goby77_b	Genotype data for an individual fish two alleles per locus. Each of the 59 loci have two columns: a and b. This column contains unique genotype IDs.	unitless	sample
Goby87_a	Genotype data for an individual fish two alleles per locus. Each of the 59 loci have two columns: a and b. This column contains unique genotype IDs.	unitless	sample
Goby87_b	Genotype data for an individual fish two alleles per locus. Each of the 59 loci have two columns: a and b. This column contains unique genotype IDs.	unitless	sample
Goby93_a	Genotype data for an individual fish two alleles per locus. Each of the 59 loci have two columns: a and b. This column contains unique genotype IDs.	unitless	sample
Goby93_b	Genotype data for an individual fish two alleles per locus. Each of the 59 loci have two columns: a and b. This column contains unique genotype IDs.	unitless	sample
Goby107_a	Genotype data for an individual fish two alleles per locus. Each of the 59 loci have two columns: a and b. This column contains unique genotype IDs.	unitless	sample
Goby107_b	Genotype data for an individual fish two alleles per locus. Each of the 59 loci have two columns: a and b. This column contains unique genotype IDs.	unitless	sample
Goby112_a	Genotype data for an individual fish two alleles per locus. Each of the 59 loci have two columns: a and b. This column contains unique genotype IDs.	unitless	sample
Goby112_b	Genotype data for an individual fish two alleles per locus. Each of the 59 loci have two columns: a and b. This column contains unique genotype IDs.	unitless	sample
Goby124_a	Genotype data for an individual fish two alleles per locus. Each of the 59 loci have two columns: a and b. This column contains unique genotype IDs.	unitless	sample
Goby124_b	Genotype data for an individual fish two alleles per locus. Each of the 59 loci have two columns: a and b. This column contains unique genotype IDs.	unitless	sample
Goby141_a	Genotype data for an individual fish two alleles per locus. Each of the 59 loci have two columns: a and b. This column contains unique genotype IDs.	unitless	sample
Goby141_b	Genotype data for an individual fish two alleles per locus. Each of the 59 loci have two columns: a and b. This column contains unique genotype IDs.	unitless	sample
Goby151_a	Genotype data for an individual fish two alleles per locus. Each of the 59 loci have two columns: a and b. This column contains unique genotype IDs.	unitless	sample
Goby151_b	Genotype data for an individual fish two alleles per locus. Each of the 59 loci have two columns: a and b. This column contains unique genotype IDs.	unitless	sample
Goby153_a	Genotype data for an individual fish two alleles per locus. Each of the 59 loci have two columns: a and b. This column contains unique genotype IDs.	unitless	sample
Goby153_b	Genotype data for an individual fish two alleles per locus. Each of the 59 loci have two columns: a and b. This column contains unique genotype IDs.	unitless	sample
Goby166_a	Genotype data for an individual fish two alleles per locus. Each of the 59 loci have two columns: a and b. This column contains unique genotype IDs.	unitless	sample
Goby166_b	Genotype data for an individual fish two alleles per locus. Each of the 59 loci have two columns: a and b. This column contains unique genotype IDs.	unitless	sample
Goby174_a	Genotype data for an individual fish two alleles per locus. Each of the 59 loci have two columns: a and b. This column contains unique genotype IDs.	unitless	sample
Goby174_b	Genotype data for an individual fish two alleles per locus. Each of the 59 loci have two columns: a and b. This column contains unique genotype IDs.	unitless	sample
Goby180_a	Genotype data for an individual fish two alleles per locus. Each of the 59 loci have two columns: a and b. This column contains unique genotype IDs.	unitless	sample
Goby180_b	Genotype data for an individual fish two alleles per locus. Each of the 59 loci have two columns: a and b. This column contains unique genotype IDs.	unitless	sample
Goby186_a	Genotype data for an individual fish two alleles per locus. Each of the 59 loci have two columns: a and b. This column contains unique genotype IDs.	unitless	sample
Goby186_b	Genotype data for an individual fish two alleles per locus. Each of the 59 loci have two columns: a and b. This column contains unique genotype IDs.	unitless	sample
Goby202_a	Genotype data for an individual fish two alleles per locus. Each of the 59 loci have two columns: a and b. This column contains unique genotype IDs.	unitless	sample
Goby202_b	Genotype data for an individual fish two alleles per locus. Each of the 59 loci have two columns: a and b. This column contains unique genotype IDs.	unitless	sample
Goby228_a	Genotype data for an individual fish two alleles per locus. Each of the 59 loci have two columns: a and b. This column contains unique genotype IDs.	unitless	sample
Goby228_b	Genotype data for an individual fish two alleles per locus. Each of the 59 loci have two columns: a and b. This column contains unique genotype IDs.	unitless	sample
Goby237_a	Genotype data for an individual fish two alleles per locus. Each of the 59 loci have two columns: a and b. This column contains unique genotype IDs.	unitless	sample
Goby237_b	Genotype data for an individual fish two alleles per locus. Each of the 59 loci have two columns: a and b. This column contains unique genotype IDs.	unitless	sample
Goby260_a	Genotype data for an individual fish two alleles per locus. Each of the 59 loci have two columns: a and b. This column contains unique genotype IDs.	unitless	sample
Goby260_b	Genotype data for an individual fish two alleles per locus. Each of the 59 loci have two columns: a and b. This column contains unique genotype IDs.	unitless	sample
Goby266_a	Genotype data for an individual fish two alleles per locus. Each of the 59 loci have two columns: a and b. This column contains unique genotype IDs.	unitless	sample
Goby266_b	Genotype data for an individual fish two alleles per locus. Each of the 59 loci have two columns: a and b. This column contains unique genotype IDs.	unitless	sample
Goby270_a	Genotype data for an individual fish two alleles per locus. Each of the 59 loci have two columns: a and b. This column contains unique genotype IDs.	unitless	sample
Goby270_b	Genotype data for an individual fish two alleles per locus. Each of the 59 loci have two columns: a and b. This column contains unique genotype IDs.	unitless	sample
Goby280_a	Genotype data for an individual fish two alleles per locus. Each of the 59 loci have two columns: a and b. This column contains unique genotype IDs.	unitless	sample
Goby280_b	Genotype data for an individual fish two alleles per locus. Each of the 59 loci have two columns: a and b. This column contains unique genotype IDs.	unitless	sample
Goby287_a	Genotype data for an individual fish two alleles per locus. Each of the 59 loci have two columns: a and b. This column contains unique genotype IDs.	unitless	sample
Goby287_b	Genotype data for an individual fish two alleles per locus. Each of the 59 loci have two columns: a and b. This column contains unique genotype IDs.	unitless	sample
Goby291_a	Genotype data for an individual fish two alleles per locus. Each of the 59 loci have two columns: a and b. This column contains unique genotype IDs.	unitless	sample
Goby291_b	Genotype data for an individual fish two alleles per locus. Each of the 59 loci have two columns: a and b. This column contains unique genotype IDs.	unitless	sample
Goby300_a	Genotype data for an individual fish two alleles per locus. Each of the 59 loci have two columns: a and b. This column contains unique genotype IDs.	unitless	sample
Goby300_b	Genotype data for an individual fish two alleles per locus. Each of the 59 loci have two columns: a and b. This column contains unique genotype IDs.	unitless	sample
Goby308_a	Genotype data for an individual fish two alleles per locus. Each of the 59 loci have two columns: a and b. This column contains unique genotype IDs.	unitless	sample
Goby308_b	Genotype data for an individual fish two alleles per locus. Each of the 59 loci have two columns: a and b. This column contains unique genotype IDs.	unitless	sample
Goby314_a	Genotype data for an individual fish two alleles per locus. Each of the 59 loci have two columns: a and b. This column contains unique genotype IDs.	unitless	sample
Goby314_b	Genotype data for an individual fish two alleles per locus. Each of the 59 loci have two columns: a and b. This column contains unique genotype IDs.	unitless	sample
Goby340_a	Genotype data for an individual fish two alleles per locus. Each of the 59 loci have two columns: a and b. This column contains unique genotype IDs.	unitless	sample
Goby340_b	Genotype data for an individual fish two alleles per locus. Each of the 59 loci have two columns: a and b. This column contains unique genotype IDs.	unitless	sample
Goby336_a	Genotype data for an individual fish two alleles per locus. Each of the 59 loci have two columns: a and b. This column contains unique genotype IDs.	unitless	sample
Goby336_b	Genotype data for an individual fish two alleles per locus. Each of the 59 loci have two columns: a and b. This column contains unique genotype IDs.	unitless	sample
Goby143_a	Genotype data for an individual fish two alleles per locus. Each of the 59 loci have two columns: a and b. This column contains unique genotype IDs.	unitless	sample
Goby143_b	Genotype data for an individual fish two alleles per locus. Each of the 59 loci have two columns: a and b. This column contains unique genotype IDs.	unitless	sample
Goby169_a	Genotype data for an individual fish two alleles per locus. Each of the 59 loci have two columns: a and b. This column contains unique genotype IDs.	unitless	sample
Goby169_b	Genotype data for an individual fish two alleles per locus. Each of the 59 loci have two columns: a and b. This column contains unique genotype IDs.	unitless	sample
Gobycytb	Genotype date gobycytb for an individual fish for a fragment of the mitochondrial DNA locus cytochrome b. This column contains unique genotype IDs.	unitless	sample

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