Dataset: Microbial eukaryotic focused metatranscriptome data from seawater collected in coastal California in May of 2015

ValidatedFinal no updates expectedDOI: 10.26008/1912/bco-dmo.745518.2Version 2 (2018-10-15)Dataset Type:Other Field Results

Principal Investigator: David Caron (University of Southern California)

Co-Principal Investigator, Contact: Sarah K. Hu (University of Southern California)

BCO-DMO Data Manager: Amber D. York (Woods Hole Oceanographic Institution)

Project: Protistan, prokaryotic, and viral processes at the San Pedro Ocean Time-series (SPOT)

Abstract

Seawater was collected via Niskin bottles mounted with a CTD from the San Pedro Ocean Time-series (SPOT) station off the coast of Southern California near the surface (5 m), 150 and 890 m, in late May 2015. Raw sequence data was generated as part of a metatranscriptome study targeting the protistan community. Raw sequences are available at the National Center for Biotechnology Information (NCBI) Sequence Read Archive (SRA) database (SRA Study ID: SRP110974, BioProject: PRJNA391503). Sequences ...

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Cite Dataset

Seawater was collected via Niskin bottles mounted with a CTD from the San Pedro Ocean Time-series (SPOT) station off the coast of Southern California near the surface (5 m), 150 and 890 m, in late May 2015. Raw sequence data was generated as part of a metatranscriptome study targeting the protistan community. Raw sequences are available at the National Center for Biotechnology Information (NCBI) Sequence Read Archive (SRA) database (SRA Study ID: SRP110974, BioProject: PRJNA391503).

These data were published in Hu et al. (2018).

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Related Publications

Results
Hu, S. K., Liu, Z., Alexander, H., Campbell, V., Connell, P. E., Dyhrman, S. T., … Caron, D. A. (2018). Shifting metabolic priorities among key protistan taxa within and below the euphotic zone. Environmental Microbiology. doi:10.1111/1462-2920.14259
Methods
Hu, S. (2017). RNA (and optional DNA) extraction from environmental samples (filters) v2 (protocols.io.hk3b4yn). Protocols.io. doi:10.17504/protocols.io.hk3b4yn
Methods
Hu, S. (2017). Sample collection from the field for downstream molecular analysis - microbial eukaryote-focused v1. Protocols.io. doi:10.17504/protocols.io.hisb4ee
Software
Hu, S. (2018). Required code for data compilation and analysis for a eukaryotic-focused metatranscriptome survey in the North Pacific (Version bcodmo_v1) [Computer software]. GitHub. Retrieved October 15, 2018, from https://github.com/BCODMO/SPOT_metatranscriptome/tree/bcodmo_v1
Software
Hu, S. K. (2017). Shifting Metabolic Priorities Among Key Protistan Taxa Within And Below The Euphotic Zone [Data set]. Zenodo. https://doi.org/10.5281/zenodo.1202041

Caron, D., Hu, S. (2020) Microbial eukaryotic focused metatranscriptome data from seawater collected in coastal California in May of 2015. Biological and Chemical Oceanography Data Management Office (BCO-DMO). (Version 2) Version Date 2018-10-15 [if applicable, indicate subset used]. doi:10.26008/1912/bco-dmo.745518.2 [access date]

Terms of Use

This dataset is licensed under Creative Commons Attribution 4.0.


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Funded by the U.S. National Science Foundation