Infauna abundance from seagrass bed core samples collected in Back Sound, North Carolina in June and July of 2013

Website: https://www.bco-dmo.org/dataset/748860
Data Type: Other Field Results
Version: 2
Version Date: 2018-06-18

Project
» Collaborative Research: Habitat fragmentation effects on fish diversity at landscape scales: experimental tests of multiple mechanisms (Habitat Fragmentation)
ContributorsAffiliationRole
Yeager, LaurenUniversity of Texas - Marine Science Institute (UTMSI)Principal Investigator, Contact
York, Amber D.Woods Hole Oceanographic Institution (WHOI BCO-DMO)BCO-DMO Data Manager

Abstract
Infauna abundance from seagrass bed core samples collected in Back Sound, North Carolina in June and July of 2013.


Coverage

Spatial Extent: N:34.70648 E:-76.37371 S:34.06503 W:-76.62355
Temporal Extent: 2013-06-13 - 2013-07-26

Dataset Description

These data were published in Yeager et al. (2019). See "Related Datasets" section for other datasets from the same core samples.

Methods & Sampling

We sampled 86 sites within seagrass habitats throughout Back Sound, North Carolina, USA (3442’ N to 3439’ N, 7637’ W to 7631’ W during July 2013. Sampling sites were located across 21 seagrass landscapes which were defined by 200m x 80m rectangles (matching common isolated bed size and shape within our system). These landscapes were previously selected to represent independent gradients in both total seagrass cover (260-11,764 m2) and landscape patchiness (1-75 individual patches; Yeager et al. 2016). Sampling sites in the current study were haphazardly placed across all 21 landscapes, but always located within seagrass itself, and not the unvegetated matrix. 

Seagrass core sampling and laboratory processing:
One core sample was taken from each sampling site. Each core measured 30 cm in diameter and captured the above ground seagrass habitat as well as the top 10 cm of the sediment surface. All cores were taken within 2 h of low tide and the GPS location of each core was marked with a Garmin 72H handheld unit (Garmin International, Olathe, Kansas, USA). Low-tide depth was measured in situ at each site at the time of sampling to the nearest 10 cm.  

Core samples were taken back to the lab and screened using a 500-m sieve; benthic macrofauna were sorted from larger debris and seagrass tissue and transferred to a 70% ETOH solution for storage. These organisms were then identified to the lowest taxon possible. Only polychaetes with intact anterior appendages were identified and counted for density estimates to prevent overestimation and because these are requisite features for accurate identification. 

The core (30-cm diameter, PVC) was gently placed by hand at each site and pushed down to a constant depth of 10 cm into the sediment.  The core was gently rotated to break seagrass rhizomes, then dug out by hand, lifted, and placed into a resealable 1.5-gallon plastic bag. The sample was transported back to the laboratory on ice. 

 


Data Processing Description

BCO-DMO Data Manager Processing Notes:
* added a conventional header with dataset name, PI name, version date
* modified parameter names to conform with BCO-DMO naming conventions
* date value "41429" changed to "6/4/2013"
* date format converted to ISO 8601 standard format yyyy-mm-dd
* data values that were a period, indicating no value, changed to the default missing data identifier in BCO-DMO, "nd" meaning "no data."

Data version 2 (2019-06-18)
* species column names updated to correct spelling and unaccepted synonyms. Species name columns and associated species list include accepted correct spellings and associated aphiaIDs as of 2019-06-18. Source of species names and accepted synonyms is the World Register of Marine Species. Species names reviewed and any ambiguous names cleared up with feedback from the data submitter.


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Data Files

File
infauna_abundance.csv
(Comma Separated Values (.csv), 21.71 KB)
MD5:3f0edf2a1831ec7a1e7b45e790ae641b
Primary data file for dataset ID 748860

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Supplemental Files

File
Core sample infauna species list
filename: infauna_abundance_species_list.csv
(Comma Separated Values (.csv), 7.57 KB)
MD5:1bbcefd631def200766add38026ad8f8
Species list containing the column names used in the dataset with the associated descriptive name of the identification, the lowest identifiable taxa, and the taxanomic identifier (aphiaID, World Register of Marine Speices) associated with the lowest identifiable taxa.

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Related Publications

Yeager, L. A., Geyer, J. K., & Fodrie, F. J. (2019). Trait sensitivities to seagrass fragmentation across spatial scales shape benthic community structure. Journal of Animal Ecology, 88(11), 1743–1754. Portico. https://doi.org/10.1111/1365-2656.13067
Results
Yeager, L. A., Keller, D. A., Burns, T. R., Pool, A. S., & Fodrie, F. J. (2016). Threshold effects of habitat fragmentation on fish diversity at landscapes scales. Ecology, 97(8), 2157–2166. doi:10.1002/ecy.1449
Methods

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Related Datasets

IsRelatedTo
Yeager, L. (2018) Infauna biomass from seagrass bed core samples collected in Back Sound, North Carolina in June and July of 2013. Biological and Chemical Oceanography Data Management Office (BCO-DMO). (Version 2) Version Date 2018-06-18 doi:10.1575/1912/bco-dmo.748852.2 [view at BCO-DMO]
Relationship Description: Data from the same core samples.
Yeager, L. (2019) Seagrass (Zostera marina and Halodule wrightii) shoot count, biomass and shoot height from seagrass bed core samples collected in Back Sound, North Carolina in June and July of 2013. Biological and Chemical Oceanography Data Management Office (BCO-DMO). (Version 2) Version Date 2019-06-18 doi:10.1575/1912/bco-dmo.748842.2 [view at BCO-DMO]
Relationship Description: Data from the same core samples.
Yeager, L. (2019) Trait data for epibenthic and infaunal seagrass macrofauna in North Carolina, USA from peer-reviewed literature and web-based identification guides. Biological and Chemical Oceanography Data Management Office (BCO-DMO). (Version 1) Version Date 2019-06-18 doi:10.1575/1912/bco-dmo.770626.1 [view at BCO-DMO]
Relationship Description: Data from the same core samples

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Parameters

ParameterDescriptionUnits
Site

Sampling location name

unitless
Date

Date (local) where core was taken. Local time zone is Eastern Daylight Time (EDT, UTC-4)

unitless
Replicate

Replicate core number at site

unitless
Latitude

Latitude of location of where core taken

decimal degrees (DD)
Longitude

Longitude of location where core taken

decimal degrees (DD)
Depth

Low tide depth where the core was taken

meters (m)
Solemya_velum

Solemya velum count within the core [Solemya velum; aphiaID:156994]

count
Ensis_directus

Ensis directus count within the core [Ensis directus; aphiaID:933783]

count
Ensis_minor

Ensis minor count within the core [Ensis minor; aphiaID:140734]

count
Modiolus_modiolus

Modiolus modiolus count within the core [Modiolus modiolus; aphiaID:140467]

count
Macoma_tenta_Macoma_sp

Macoma tenta/ Macoma sp. count within the core [Macoma; aphiaID:138531]

count
Nucula_proxima

Nucula proxima count within the core [Nucula proxima; aphiaID:156916]

count
Caryocorbula_contracta

Caryocorbula contracta count within the core [Caryocorbula contracta; aphiaID:420977]

count
Cumingia_tellinoides

Cumingia tellinoides count within the core [Cumingia tellinoides; aphiaID:156823]

count
Dallocardia_muricata

Dallocardia muricata count within the core [Dallocardia muricata; aphiaID:381280]

count
Lyonsia_hyalina

Lyonsia hyalina count within the core [Lyonsia hyalina; aphiaID:156793]

count
Brachidontes_exustus

Brachidontes exustus count within the core [Brachidontes exustus; aphiaID:397026]

count
Mytilus_edulis

Mytilus edulis count within the core [Mytilus edulis; aphiaID:140480]

count
Modiolus_squamosus

Modiolus squamosus count within the core [Modiolus squamosus; aphiaID:420706]

count
Anadara_transversa

Anadara transversa count within the core [Anadara transversa; aphiaID:156734]

count
Lucina_multilineata

Lucina multilineata count within the core [Lucina multilineata; aphiaID:758428]

count
Laevicardium_mortoni

Laevicardium mortoni count within the core [Laevicardium mortoni; aphiaID:156782]

count
Anadara_brasiliana

Anadara brasiliana count within the core [Anadara brasiliana; aphiaID:504322]

count
Abra_lioica

Abra lioica count within the core [Abra lioica; aphiaID:156730]

count
Argopecten_gibbus

Argopecten gibbus count within the core [Argopecten gibbus; aphiaID:394271]

count
Parvilucina_crenella

Parvilucina crenella count within the core [Parvilucina crenella; aphiaID:420799]

count
Strigilla_mirabilis

Strigilla mirabilis count within the core [Strigilla mirabilis; aphiaID:420895]

count
Spisula_solidissima

Spisula solidissima count within the core [Spisula solidissima; aphiaID:156996]

count
Serratina_aequistriata

Serratina aequistriata count within the core [Serratina aequistriata; aphiaID:877243]

count
Tagelus_divisus

Tagelus divisus count within the core [Tagelus divisus; aphiaID:156999]

count
Tagelus_plebeius

Tagelus plebeius count within the core [Tagelus plebeius; aphiaID:157001]

count
Limaria_pellucida

Limaria pellucida count within the core [Limaria pellucida; aphiaID:420751]

count
Semele_spp

Semele spp. count within the core [Semele; aphiaID:138476]

count
Chione_cancellata

Chione cancellata count within the core [Chione cancellata; aphiaID:397040]

count
Mercenaria_mercenaria

Mercenaria mercenaria count within the core [Mercenaria mercenaria; aphiaID:141919]

count
Chioneryx_grus

Chioneryx grus count within the core [Chioneryx grus; aphiaID:507508]

count
Drilonereis_spp

Drilonereis spp. count within the core [Drilonereis; aphiaID:129200]

count
Arabella_iricolor

Arabella iricolor count within the core [Arabella iricolor; aphiaID:129854]

count
Lumbrineris_spp

Lumbrineris spp. count within the core [Lumbrineris; aphiaID:129337]

count
Nereis_spp

Nereis spp. count within the core [Nereis; aphiaID:129379]

count
Ceratonereis_spp

Ceratonereis spp. count within the core [Ceratonereis; aphiaID:129372]

count
Platynereis_dumerilii

Platynereis dumerilii count within the core [Platynereis dumerilii; aphiaID:130417]

count
Nereiphylla_fragilis

Nereiphylla fragilis count within the core [Nereiphylla fragilis; aphiaID:157502]

count
Marphysa_sanguinea_Marphysa_sp

Marphysa sanguinea/Marphysa sp. count within the core [Marphysa; aphiaID:129281]

count
Glycera_spp

Glycera spp. count within the core [Glycera; aphiaID:129296]

count
Artacama_proboscidea

Artacama proboscidea count within the core [Artacama proboscidea; aphiaID:131482]

count
Maldane_sp

Maldane sp. count within the core [Maldane; aphiaID:129352]

count
Amphitrite_sp

Amphitrite sp. count within the core [Amphitrite; aphiaID:129686]

count
Neoamphitrite_figulus

Neoamphitrite figulus count within the core [Neoamphitrite figulus; aphiaID:131504]

count
Piromis_eruca

Piromis eruca count within the core [Piromis eruca; aphiaID:130114]

count
Melinna_spp

Melinna spp. count within the core [Melinna; aphiaID:129168]

count
Amphicteis_gunneri

Amphicteis gunneri count within the core [Amphicteis gunneri; aphiaID:129784]

count
Diopatra_cuprea

Diopatra cuprea count within the core [Diopatra cuprea; aphiaID:157339]

count
Kinbergonuphis_sp

Kinbergonuphis sp. count within the core [Kinbergonuphis; aphiaID:173767]

count
Pista_maculata

Pista maculata count within the core [Pista maculata; aphiaID:868065]

count
Clymenella_torquata

Clymenella torquata count within the core [Clymenella torquata; aphiaID:130279]

count
Sabaco_elongatus

Sabaco elongatus count within the core [Sabaco elongatus; aphiaID:157550]

count
Hobsonia_florida

Hobsonia florida count within the core [Hobsonia florida; aphiaID:333624]

count
Potamilla_neglecta

Potamilla neglecta count within the core [Potamilla neglecta; aphiaID:130954]

count
Capitellidae

Capitellidae count within the core [Capitellidae; aphiaID:921]

count
Lepidametria_commensalis

Lepidametria commensalis count within the core [Lepidametria commensalis; aphiaID:236706]

count
Sthenelais_limicola

Sthenelais limicola count within the core [Sthenelais limicola; aphiaID:131077]

count
Sthenelais_boa_Sthenelais_sp

Sthenelais boa/ Sthenelais sp. count within the core [Sthenelais; aphiaID:129595]

count
Lepidonotus_sp

Lepidonotus sp. count within the core [Lepidonotus; aphiaID:129496]

count
Phyllodocida_order

Phyllodocida (order) count within the core [Phyllodocida; aphiaID:892]

count
Melanella_polita

Melanella polita count within the core [Melanella polita; aphiaID:139859]

count
Astyris_lunata

Astyris lunata count within the core [Astyris lunata; aphiaID:160102]

count
Bittiolum_varium

Bittiolum varium count within the core [Bittiolum varium; aphiaID:160174]

count
Crepidula_convexa

Crepidula convexa count within the core [Crepidula convexa; aphiaID:160228]

count
Terebra_sp

Terebra sp. count within the core [Terebra; aphiaID:160427]

count
Acteocina_canaliculata

Acteocina canaliculata count within the core [Acteocina canaliculata; aphiaID:160065]

count
Crepidula_maculosa

Crepidula maculosa count within the core [Crepidula maculosa; aphiaID:419704]

count
Tritia_trivittata

Tritia trivittata count within the core [Tritia trivittata; aphiaID:737284]

count
Costoanachis_avara

Costoanachis avara count within the core [Costoanachis avara; aphiaID:160222]

count
Pyrgocythara_plicosa

Pyrgocythara plicosa count within the core [Pyrgocythara plicosa; aphiaID:160476]

count
Phrontis_vibex

Phrontis vibex count within the core [Phrontis vibex; aphiaID:877061]

count
Boonea_sp

Boonea sp. count within the core [Boonea; aphiaID:397023]

count
Hippolyte_sp

Hippolyte sp. count within the core [Hippolyte; aphiaID:106987]

count
Palaemon_sp

Palaemon sp. count within the core [Palaemon; aphiaID:107032]

count
Panopeus_herbistii_Dyspanopeus_sayi

Panopeus herbistii/Dyspanopeus sayi count within the core [Panopeidae; aphiaID:106765]

count
Callinectes_sapidus

Callinectes sapidus count within the core [Callinectes sapidus; aphiaID:107379]

count
Callinectes_similis

Callinectes similis count within the core [Callinectes similis; aphiaID:158055]

count
Pinnixa_spp

Pinnixa spp. count within the core [Pinnixa; aphiaID:158444]

count
Alpheus_heterochaelis

Alpheus heterochaelis count within the core [Alpheus heterochaelis; aphiaID:158348]

count
Pagurus_pollicaris_Pagurus_sp

Pagurus pollicaris/Pagurus sp. count within the core [Pagurus; aphiaID:106854]

count
Upogebia_affinis

Upogebia affinis count within the core [Upogebia affinis; aphiaID:158389]

count
Caprella_penantis

Caprella penantis count within the core [Caprella penantis; aphiaID:101846]

count
Amphipod

Amphipod count within the core [Amphipoda; aphiaID:1135]

count
Erichsonella_spp

Erichsonella spp. count within the core [Erichsonella; aphiaID:157886]

count
Cyathura_polita

Cyathura polita count within the core [Cyathura polita; aphiaID:157847]

count
Sphaeroma_sp

Sphaeroma sp. count within the core [Sphaeroma; aphiaID:955716]

count
Sclerodactyla_briareus

Sclerodactyla briareus count within the core [Sclerodactyla briareus; aphiaID:158532]

count
Thyonella_gemmata

Thyonella gemmata count within the core [Thyonella gemmata; aphiaID:158534]

count
Ophioderma_brevispina

Ophioderma brevispina count within the core [Ophioderma brevispina; aphiaID:158073]

count
Amphioplus_abditus

Amphioplus abditus count within the core [Amphioplus (Amphioplus) abditus; aphiaID:244985]

count
Chaetopleura_sp

Chaetopleura sp. count within the core [Chaetopleura; aphiaID:138086]

count
Lagodon_rhomboides

Lagodon rhomboides count within the core [Lagodon rhomboides; aphiaID:159249]

count
Gobionellus_sp

Gobionellus sp. count within the core [Gobionellus; aphiaID:159751]

count
Gobiosoma_bosc

Gobiosoma bosc count within the core [Gobiosoma bosc; aphiaID:159767]

count
UNID_Fish_species

Unidentified Fish species count within the core [Actinopterygii; aphiaID:10194]

count
UNID_polychaetes

Unidentified polychaete(s) count within the core [Polychaeta; aphiaID:883]

count
UNID_Bivalve

Unidentified bivalve count within the core [Bivalvia; aphiaID:105]

count
UNID_Shrimp

Unidentified shrimp count within the core [Decapoda; aphiaID:1130]

count
UNID_BARNACLE

Unidentified barnacle count within the core [Cirripedia; aphiaID:1082]

count
UNID_Gastropod

Unidentified Gastropod count within the core [Gastropoda; aphiaID:101]

count


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Instruments

Dataset-specific Instrument Name
Garmin 72H handheld unit (Garmin International, Olathe, Kansas, USA)
Generic Instrument Name
GPS receiver
Generic Instrument Description
Acquires satellite signals and tracks your location. This term has been deprecated. Use instead: https://www.bco-dmo.org/instrument/560


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Project Information

Collaborative Research: Habitat fragmentation effects on fish diversity at landscape scales: experimental tests of multiple mechanisms (Habitat Fragmentation)

Coverage: North Carolina


Amount and quality of habitat is thought to be of fundamental importance to maintaining coastal marine ecosystems. This research will use large-scale field experiments to help understand how and why fish populations respond to fragmentation of seagrass habitats. The question is complex because increased fragmentation in seagrass beds decreases the amount and also the configuration of the habitat (one patch splits into many, patches become further apart, the amount of edge increases, etc). Previous work by the investigators in natural seagrass meadows provided evidence that fragmentation interacts with amount of habitat to influence the community dynamics of fishes in coastal marine landscapes. Specifically, fragmentation had no effect when the habitat was large, but had a negative effect when habitat was smaller. In this study, the investigators will build artificial seagrass habitat to use in a series of manipulative field experiments at an ambitious scale. The results will provide new, more specific information about how coastal fish community dynamics are affected by changes in overall amount and fragmentation of seagrass habitat, in concert with factors such as disturbance, larval dispersal, and wave energy. The project will support two early-career investigators, inform habitat conservation strategies for coastal management, and provide training opportunities for graduate and undergraduate students. The investigators plan to target students from underrepresented groups for the research opportunities.

Building on previous research in seagrass environments, this research will conduct a series of field experiments approach at novel, yet relevant scales, to test how habitat area and fragmentation affect fish diversity and productivity. Specifically, 15 by 15-m seagrass beds will be created using artificial seagrass units (ASUs) that control for within-patch-level (~1-10 m2) factors such as shoot density and length. The investigators will employ ASUs to manipulate total habitat area and the degree of fragmentation within seagrass beds in a temperate estuary in North Carolina. In year one, response of the fishes that colonize these landscapes will be measured as abundance, biomass, community structure, as well as taxonomic and functional diversity. Targeted ASU removals will then follow to determine species-specific responses to habitat disturbance. In year two, the landscape array and sampling regime will be doubled, and half of the landscapes will be seeded with post-larval fish of low dispersal ability to test whether pre- or post-recruitment processes drive landscape-scale patterns. In year three, the role of wave exposure (a natural driver of seagrass fragmentation) in mediating fish community response to landscape configuration will be tested by deploying ASU meadows across low and high energy environments.



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Funding

Funding SourceAward
NSF Division of Ocean Sciences (NSF OCE)

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