Dataset: Specimen log with OTU identifiers collected from Palau marine lakes

Final no updates expectedDOI: 10.26008/1912/bco-dmo.768138.2Version 2 (2021-12-30)Dataset Type:Other Field Results

Principal Investigator: Michael N. Dawson (University of California-Merced)

BCO-DMO Data Manager: Nancy Copley (Woods Hole Oceanographic Institution)

Program: Dimensions of Biodiversity (Dimensions of Biodiversity)

Project: Do Parallel Patterns Arise from Parallel Processes? (PaPaPro)

Abstract

List of all barcoded specimens of collected invertebrates with OTU identifiers collected from Palau marine lakes. FASTA files for major invertebrate groups are included in supplemental files.

Cite Dataset

List of all barcoded specimens of collected invertebrates with OTU identifiers collected from Palau marine lakes. FASTA files for major invertebrate groups are included in supplemental files. These data are presented in Rapacciuolo, et al (2019).

* NOTE: All columns with taxonomic data have been removed per request of PI. Please contact them before using these data to make sure you are not duplicating efforts. 

Related Datasets

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Related Publications

Results
Rapacciuolo, G., Beman, J. M., Schiebelhut, L. M., & Dawson, M. N. (2019). Microbes and macro-invertebrates show parallel β-diversity but contrasting α-diversity patterns in a marine natural experiment. Proceedings of the Royal Society B: Biological Sciences, 286(1912), 20190999. doi:10.1098/rspb.2019.0999
Methods
BROWN, S. D. J., COLLINS, R. A., BOYER, S., LEFORT, M.-C., MALUMBRES-OLARTE, J., VINK, C. J., & CRUICKSHANK, R. H. (2012). Spider: An R package for the analysis of species identity and evolution, with particular reference to DNA barcoding. Molecular Ecology Resources, 12(3), 562–565. doi:10.1111/j.1755-0998.2011.03108.x
Methods
Dawson, M. N., Raskoff, K. A., & Jacobs, D. K. (1998). Field preservation of marine invertebrate tissue for DNA analyses. Molecular marine biology and biotechnology, 7(2), 145-152.
Methods
Edgar, R. C. (2004). MUSCLE: multiple sequence alignment with high accuracy and high throughput. Nucleic Acids Research, 32(5), 1792–1797. doi:10.1093/nar/gkh340
Methods
Huang, D., Meier, R., Todd, P. A., & Chou, L. M. (2008). Slow Mitochondrial COI Sequence Evolution at the Base of the Metazoan Tree and Its Implications for DNA Barcoding. Journal of Molecular Evolution, 66(2), 167–174. doi:10.1007/s00239-008-9069-5

Dawson, M. N. (2021) Specimen log with OTU identifiers collected from Palau marine lakes. Biological and Chemical Oceanography Data Management Office (BCO-DMO). (Version 2) Version Date 2021-12-30 [if applicable, indicate subset used]. doi:10.26008/1912/bco-dmo.768138.2 [access date]

Terms of Use

This dataset is licensed under Creative Commons Attribution 4.0.


If you wish to use this dataset, it is highly recommended that you contact the original principal investigators (PI). Should the relevant PI be unavailable, please contact BCO-DMO (info@bco-dmo.org) for additional guidance. For general guidance please see the BCO-DMO Terms of Use document.

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Funded by the U.S. National Science Foundation