Dataset: Ross Sea metaproteome protein spectral counts searched against Phaeocystis strain transcriptome from net tows during RVIB Nathaniel B. Palmer cruise NBP0601 in December of 2015

ValidatedFinal no updates expectedDOI: 10.26008/1912/bco-dmo.768237.1Version 1 (2024-04-29)Dataset Type:Cruise Results

Principal Investigator: Mak A. Saito (Woods Hole Oceanographic Institution)

Contact: Sara Bender (Woods Hole Oceanographic Institution)

BCO-DMO Data Manager: Amber D. York (Woods Hole Oceanographic Institution)

Program: Ocean Carbon and Biogeochemistry (OCB)

Project: Controls of Ross Sea Algal Community Structure (CORSACS)

Abstract

A net tow metaproteome of a Phaeocystis antarctica bloom in the Ross Sea, mapped here to Phaeocystis metatranscriptomes analyzed by 2D LCMS, in units of protein spectral counts.

Cite Dataset

These data are part of the Ocean Protein Portal "Ross Sea Net Tow (Bender)" dataset version 1 (https://proteinportal.whoi.edu/; Saito et al., 2020).

Related Datasets

IsRelatedTo
Dataset: https://proteinportal.whoi.edu/
Protein Portal (2024). Ocean Protein Portal. Available from https://proteinportal.whoi.edu/
IsRelatedTo
Dataset: Ross Sea metaproteome FASTA files
Relationship Description: Generated from the same sampling event and methodology. These data are part of the same dataset "Ross Sea Net Tow (Bender)" version 1 at the Ocean Protein Portal (https://proteinportal.whoi.edu/).
Saito, M. A. (2024) FASTA file of protein identifications from net tows during RVIB Nathaniel B. Palmer cruise NBP0601 in December of 2015. Biological and Chemical Oceanography Data Management Office (BCO-DMO). (Version 1) Version Date 2019-05-17 doi:10.26008/1912/bco-dmo.769266.1
IsRelatedTo
Dataset: Ross Sea metaproteome peptide spectral counts
Relationship Description: Generated from the same sampling event and methodology. These data are part of the same dataset "Ross Sea Net Tow (Bender)" version 1 at the Ocean Protein Portal (https://proteinportal.whoi.edu/).
Saito, M. A. (2024) Ross Sea metaproteome peptide spectral counts searched against Phaeocystis strain transcriptome from net tows during RVIB Nathaniel B. Palmer cruise NBP0601 in December of 2015. Biological and Chemical Oceanography Data Management Office (BCO-DMO). (Version 2) Version Date 2024-05-24 doi:10.26008/1912/bco-dmo.768259.2

Related Publications

Results
Bender, S. J., Moran, D. M., McIlvin, M. R., Zheng, H., McCrow, J. P., Badger, J., … Saito, M. A. (2018). Colony formation in Phaeocystis antarctica connecting molecular mechanisms with iron biogeochemistry. Biogeosciences, 15(16), 4923–4942. doi:10.5194/bg-15-4923-2018
Methods
Saito, M. A., Bertrand, E. M., Duffy, M. E., Gaylord, D. A., Held, N. A., Hervey, W. J., Hettich, R. L., Jagtap, P. D., Janech, M. G., Kinkade, D. B., Leary, D. H., McIlvin, M. R., Moore, E. K., Morris, R. M., Neely, B. A., Nunn, B. L., Saunders, J. K., Shepherd, A. I., Symmonds, N. I., & Walsh, D. A. (2019). Progress and Challenges in Ocean Metaproteomics and Proposed Best Practices for Data Sharing. Journal of Proteome Research, 18(4), 1461–1476. https://doi.org/10.1021/acs.jproteome.8b00761
Related Research
Saito, M. A., Saunders, J. K., Chagnon, M., Gaylord, D. A., Shepherd, A., Held, N. A., Dupont, C., Symmonds, N., York, A., Charron, M., & Kinkade, D. B. (2020). Development of an Ocean Protein Portal for Interactive Discovery and Education. Journal of Proteome Research, 20(1), 326–336. https://doi.org/10.1021/acs.jproteome.0c00382

Saito, M. A. (2024) Ross Sea metaproteome protein spectral counts searched against Phaeocystis strain transcriptome from net tows during RVIB Nathaniel B. Palmer cruise NBP0601 in December of 2015. Biological and Chemical Oceanography Data Management Office (BCO-DMO). (Version 1) Version Date 2024-04-29 [if applicable, indicate subset used]. doi:10.26008/1912/bco-dmo.768237.1 [access date]

Terms of Use

This dataset is licensed under Creative Commons Attribution 4.0.


If you wish to use this dataset, it is highly recommended that you contact the original principal investigators (PI). Should the relevant PI be unavailable, please contact BCO-DMO (info@bco-dmo.org) for additional guidance. For general guidance please see the BCO-DMO Terms of Use document.

NSF Logo©2020 Biological and Chemical Oceanography Data Management Office.
Funded by the U.S. National Science Foundation