Dataset: DNA and cDNA (RNA) V4 tag sequence genetic accessions from microbial eukaryotes sampled in the upper euphotic zone of the eastern North Pacific during R/V Yellowfin cruises from 2003-2018

ValidatedRelease Date:2021-10-01Final no updates expectedVersion 1 (2019-06-07)Dataset Type:Cruise Results

Principal Investigator: David Caron (University of Southern California)

Co-Principal Investigator: Lisa Mesrop (University of Southern California)

BCO-DMO Data Manager: Amber D. York (Woods Hole Oceanographic Institution)

Project: Protistan, prokaryotic, and viral processes at the San Pedro Ocean Time-series (SPOT)

Abstract

DNA and cDNA (RNA) V4 tag sequences that characterize the spatiotemporal (monthly and seasonal) variability of eukaryotic microbial assemblages in the upper euphotic zone of the eastern North Pacific at 5m depth and Deep chlorophyll maximum (DCM) from 2003 - 2018. These genetic sequences under BioProject PRJNA311248 (https://www.ncbi.nlm.nih.gov/bioproject/PRJNA311248) will be made available at the National Center for Biotechnology Information (NCBI) on October 1st, 2021.

Cite Dataset

DNA and cDNA (RNA) V4 tag sequences that characterize the spatiotemporal (monthly and seasonal) variability of eukaryotic microbial assemblages in the upper euphotic zone of the eastern North Pacific at 5m depth and Deep chlorophyll maximum (DCM) from 2003 - 2018.

These genetic sequences under BioProject PRJNA311248 will be made available at National Center for Biotechnology Information (NCBI) on June 1st, 2020.

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Related Publications

Results
Hu, S. K., Campbell, V., Connell, P., Gellene, A. G., Liu, Z., Terrado, R., & Caron, D. A. (2016). Protistan diversity and activity inferred from RNA and DNA at a coastal ocean site in the eastern North Pacific. FEMS Microbiology Ecology, fiw050. doi:10.1093/femsec/fiw050

Caron, D., Mesrop, L. (2019) DNA and cDNA (RNA) V4 tag sequence genetic accessions from microbial eukaryotes sampled in the upper euphotic zone of the eastern North Pacific during R/V Yellowfin cruises from 2003-2018. Biological and Chemical Oceanography Data Management Office (BCO-DMO). (Version 1) Version Date 2019-06-07 [if applicable, indicate subset used]. http://lod.bco-dmo.org/id/dataset/770110 [access date]

Terms of Use

This dataset is licensed under Creative Commons Attribution 4.0.


If you wish to use this dataset, it is highly recommended that you contact the original principal investigators (PI). Should the relevant PI be unavailable, please contact BCO-DMO (info@bco-dmo.org) for additional guidance. For general guidance please see the BCO-DMO Terms of Use document.

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Funded by the U.S. National Science Foundation