Contributors | Affiliation | Role |
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Pinsky, Malin | Rutgers University | Principal Investigator |
Stuart, Michelle | Rutgers University | Co-Principal Investigator, Contact |
Copley, Nancy | Woods Hole Oceanographic Institution (WHOI BCO-DMO) | BCO-DMO Data Manager |
Dive log of anemone observations from the west coast of Leyte, the Philippines in the municipalities of Albuera (10.91667, 124.69667) and Bay Bay City (11.07611, 124.87528), 2012-2018.
Anemone surveyor procedure:
- searches adjacent area for anemone tag (anemone could have moved a few feet since last encounter)
- records time, species, size of anemone, tag number if present
- watches anemone and counts the number of fish and estimates sizes (same procedure regardless of species)
- records species of fish, estimates sizes
- adds tag after the fact if one was missing or if there was only one zip tie tag (old system tag)
- flags anemone with flagging tape that it is ready to be hunted if APCL were present.
Data entry was made with Excel or Google sheets, depending on the internet connection.
Data cleaning was performed in R using the tidyverse package.
For species codes, see: https://www.bco-dmo.org/dataset/785633
File |
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anemone_log.csv (Comma Separated Values (.csv), 712.18 KB) MD5:c43d118581444bba3e772b5e0ad58875 Primary data file for dataset ID 781443 |
Parameter | Description | Units |
anem_table_id | unique identifier of observation event (whole number), links to the clownfish table | unitless |
dive_table_id | unique dive identifier (whole number), links to the diveinfo table | unitless |
anem_obs_time | time of observation event in Asia/Manila time zone, military time, (text) - this field is text for easier movement of data from SQL to R | unitless |
anem_collector | initials of the person who filled out the data sheet (text) | unitless |
depth_m | the depth of the anemone if recorded in meters | meters |
depth_ft | the depth of the anemone if recorded in feet | feet |
anem_spp | species code of anemone: ENQD = Entacmea quadricolor; STME = Stichodactyla mertensii; HECR = Heteractis cripsa; HEMG = H. magnifica; STHD = S. haddoni; HEAR = H. aurora; MADO = Macrodactyla doreensis; HEMA = H. malu, STGI = S. gigantea; ???? = a fish that cannot be traced to an anemone; EMPT = anemone tags found without an accompanying anemone | unitless |
anem_dia | estimated diameter in cm of the anemone | centimeters |
anem_obs | a unique identifier of anemones that have more than one observation, links to other rows in the anemones table | unitless |
old_anem_id | the tag number of an anemone with only one old zip tie tag, a new tag should be installed, -9999 signifies unreadable | unitless |
anem_id | the tag number identifying the anemone, -9999 signifies unreadable | unitless |
anem_sample_id | the id of an anemone tissue sample, if collected (rarely) | unitless |
anem_notes | any notes pertaining to the anemone | unitless |
anem_correction | if a Y is present, a correction has been made to the data since data entry from the data sheet | unitless |
anem_corr_date | the date of the most recent correction | unitless |
anem_corr_editor | the editor of the most recent correction | unitless |
anem_corr_message | which field was changed from what old value to what new value and why, based on what evidence. If another correction was already present, amend the message to include the date and correction editor of previous corrections | unitless |
Dataset-specific Instrument Name | Biomark 601 PIT tag reader |
Generic Instrument Name | tracking tag |
Dataset-specific Description | Passive Integrated Transponder (PIT) tags help scientists track individual organisms by providing a reliable lifetime 'barcode' for an individual animal. PIT tags are dormant until activated; they therefore do not require any internal source of power throughout their lifespan.To activate the tag, a low-frequency radio signal is emitted by a scanning device that generates a close-range electromagnetic field. The tag then sends a unique alpha-numeric code back to the reader (Keck 1994). Scanners are available as handheld, portable, battery-powered models and as stationary, automated models that are usually used for automated scanning. |
Generic Instrument Description | Devices attached to living organisms with the purpose of determining the location of those organisms as a function of time after tagging and release. |
Website | |
Platform | SCUBA Pinsky Leyte |
Start Date | 2012-05-05 |
End Date | 2018-04-10 |
Description | Field seasons (SCUBA) in Leyte, Philippines to study coral reef fish resilience.
West coast of Leyte, Philippines in the municipalities of Albuera (10.91667, 124.69667) and Bay Bay City (10.676940, 124.799170) |
Description from NSF award abstract:
When Typhoon Haiyan hit the Philippines it had sustained winds of 305 to 315 kph and was the strongest storm ever to make landfall. Storms are one of the most important disturbances to coral reef ecosystems. Previous research has primarily emphasized that habitat recovery is important for the recovery of reef fish communities after disturbance. We understand little, however, about the role of larval dispersal in mediating species responses to disturbance. Reef fish function as metapopulations connected by larval dispersal among reefs, and larval connectivity is therefore a critical process for their dynamics. A field site directly in Typhoon Haiyan's path provides an ideal opportunity to address the role of larval dispersal during recovery. Over the course of four field seasons (2008 to 2013), nearly two thousand clownfish were surveyed along 20km of coastline. Clownfish possess the same basic life history as most reef fish (sedentary adults and pelagic larvae), but are sufficiently rare and visible that genetic parentage methods can be used to follow larval dispersal. This study site is therefore a unique location in which to understand the metapopulation impacts of a massive storm. This project will focus on three hypotheses: 1) Habitat destruction determines the short-term impacts of storms disturbance, 2) Metapopulation processes shape recolonization after disturbance, and 3) Disturbance allows rare competitors to increase in abundance. The project will address these questions with a combination of fixed and random transects to assess reef habitat and reef fish abundance and diversity, as well as detailed, spatially explicit surveys of anemones and clownfish. Genetic mark-recapture and parentage methods with yellowtail clownfish will pinpoint the origin of new recruits that recolonize the reef post-typhoon.
Funding Source | Award |
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NSF Division of Ocean Sciences (NSF OCE) |