Dataset: Diatom TPC parameters

Name: Thermal niche across three light levels for seven strains of a marine diatom Chaetoceros sp. isolated from Narragansett Bay March 2018
Published: 2019-11-20
Keywords: Chaetoceros, Psychrophile, Light Sensitivity, Eppley-Norberg Curve, temperature, Narragansett Bay, biota, oceans

Cite This Dataset

DOI:10.1575/1912/bco-dmo.782839.1

Spatial Extent: N:41.7129 E:-71.2674 S:41.4471 W:-71.4007

Temporal Extent: 2017-01-01 - 2018-10-31

Project:

Dimensions: Collaborative Research: Genetic, functional and phylogenetic diversity determines marine phytoplankton community responses to changing temperature and nutrients (Phytoplankton Community Responses)

Program:

Dimensions of Biodiversity (Dimensions of Biodiversity)

Principal Investigator:

David A. Hutchins (University of Southern California, USC)

BCO-DMO Data Manager:

Nancy Copley (Woods Hole Oceanographic Institution, WHOI BCO-DMO)

Version:

Version Date:

2019-11-20

Restricted:

Release Date:

2020-03-09

Validated:

Yes

Current State:

Final no updates expected

Thermal niche across three light levels for seven strains of a marine diatom Chaetoceros sp. isolated from Narragansett Bay March 2018

Abstract:

Thermal niche, as calculated from the Thermal Performance Curve (TPC), across three light levels for seven strains of a marine diatom Chaetoceros sp. isolated from Narragansett Bay March 2018.

Expand/Collapse All

Archival Copy

Version Date	Archive	Persistent Identifier (PID)	Date PID Issued
2019-11-20	Marine Biological Laboratory/Woods Hole Oceanographic Institution Library (MBLWHOI DLA)	10.1575/1912/bco-dmo.782839.1	2020-03-09

Description

Thermal niche, as calculated from the Thermal Performance Curve (TPC), across three light levels for seven strains of a marine diatom Chaetoceros sp. isolated from Narragansett Bay March 2018.

Methods & Sampling

These calculations were generated using previously calculated growth rates across six to seven temperatures. The calculations were done in R and used the calculations for thermal niche used in Thomas et al. 2012.

Data Processing Description

BCO-DMO Processing Notes:
- added conventional header with dataset name, PI name, version date
- modified parameter names to conform with BCO-DMO naming conventions (replaced spaces with underscores)
- reduced temperature precision from 8 to 1 decimal place

Data Files

File
diatom_tpc_parameters.csv (Comma Separated Values (.csv), 606 bytes) MD5:aa9adb852ce5804358f9b2127422983b Primary data file for dataset ID 782839

More Information about this dataset

Funding Sources

Funding Source	Award Number
NSF Division of Ocean Sciences	OCE-1638804

Deployments

None available yet

Instruments

Turner Designs Fluorometer 10-AU

Supplied Name:

Supplied Description:

Used to measure fluorescence.

Instrument Type

Generic Name: Turner Designs Fluorometer 10-AU

Acronym: Turner Fluorometer 10-AU

Community Identifier: http://vocab.nerc.ac.uk/collection/L22/current/TOOL0393/

Generic Description:

The Turner Designs 10-AU Field Fluorometer is used to measure Chlorophyll fluorescence. The 10AU Fluorometer can be set up for continuous-flow monitoring or discrete sample analyses. A variety of compounds can be measured using application-specific optical filters available from the manufacturer. (read more from Turner Designs, turnerdesigns.com, Sunnyvale, CA, USA)

Parameters

Date and time formats are described in python strftime() syntax.

Supplied Name	Supplied description	Supplied Units	Standard Name
Strain	strain code for Chaetoceros sp.	unitless	sample
Light	light level during experiment	umol Photons per m2 per second	irradiance
topt	the temperature level to support fastest growth	degrees Celsius	temp
tmin	the lowest temperature able to support growth	degrees Celsius	temp
tmax	the highest temperature able to support growth	degrees Celsius	temp
rsqr	R-squared for thermal performance curve model	unitless	temp
width	thermal niche width: temperature range able to support growth	degrees Celsius	temp