Dataset: Series 2A: photophysiology - computed

Experiments were conducted in the lab at the University of California Santa Barbara.

Experimental setup:

The experiments were designed to test the combined effects of six temperatures, and eight light intensities on growth and photophysiology of the diatom T. pseudonana CCMP1014 in a multifactorial design. Four temperatures were tested: 13.5°C, 20°C, 25°C, 29°C, 31°C and 32.5°C. Within each temperature, eight light levels were tested: 25, 50, 80,115,190, 300, 450 and 600 µmol photons · m-2 · s-1. All lights were set at a 12 h day: 12 h dark cycle. For logistical reasons, experiments were partially conducted in series.

Experiments were conducted in Multicultivator MC-1000 OD units (Photon Systems Instruments, Drasov, Czech Republic). Each unit consists of eight 85 ml test-tubes immersed in a thermostated water bath, each independently illuminated by an array of cool white LEDs set at specific intensity and timing. A 0.2µm filtered ambient air was bubbled through sterile artificial seawater, and the humidified air was supplied to each tube  Each experiment was split into two phases: An acclimation phase spanning 3 days, was used to acclimate cultures to their new environment. Pre-acclimated, exponentially-growing cultures were then inoculated into fresh media and incubated through a 4-day experimental phase during which assessments of growth, photophysiology, and nutrient cycling were carried out daily. All sampling started 6 hours into the daily light cycle to minimize effects of diurnal cycles.

Experiments were conducted with artificial seawater (ASW) prepared using previously described methods (Kester et. al 1967), and enriched with 50mL per liter of UV sterilized natural seawater and nitrate (NO3), phosphate (PO4), silicic acid (Si[OH]4), at levels ensuring that the cultures would remain nutrient-replete over the course of the experiment. Trace metals and vitamins were added as in f/2 (Guillard 1975). he pH of the growth media was measured spectrophometrically using the m-cresol purple method (Dickson 1993), and adjusted using 0.1N HCl or 0.1M NaOH.

Photophysiology

Photophysiology was assessed daily using a handheld Pulse Amplitude Modulated (PAM) fluorometer (AquaPen-C AP-C 100, Photon System Instruments, Czech Republic). A sample was collected from each light treatment for each, 5 hours after the start of the daily light cycle, and placed in the dark for a minimum of 30 minutes prior to measurements. The dark-adapted sample was used to generate light curves that provide measurements of in-vivo chlorophyll autofluorescence (F0), the maximum quantum yield (QYmax or Fv/Fm), and relative photosynthesis rates based on PSII quantum yields at varying light intensities - using the instrument’s LC3 protocol. The LC3 protocol involves measurements of baseline and maximal fluorescence over seven 60-second phases, with each phase representing a light intensity from 10 to 1000 μmol photons m-2 · s-1.  Blue light (455 nm) was used as actinic light in these experiments, and measurements were made at measuring illumination (f-pulse) intensity of 0.03 μmol photons m-2 · s-1, and saturating (F-pulse) illumination of 2100 μmol photons m-2 · s-1, and actinic illumination (A-pulse) controlled by the instrument’s protocol were set at 10, 20, 50, 100, 300, 500,and 1000  μmol photons m-2 · s-1 (for each 60-second phase).