Contributors | Affiliation | Role |
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Hughes, A. Randall | Northeastern University | Principal Investigator |
Rauch, Shannon | Woods Hole Oceanographic Institution (WHOI BCO-DMO) | BCO-DMO Data Manager |
Data Processing:
We analyzed the number of vegetative shoots per 0.0625 m^2 quadrat using a generalized linear model (GLM) with a negative binomial regression and site, depth, and time (week) as fixed effects and including all possible interactions. We did the same for the density of flowering shoots and the density of all shoots (total density). We analyzed the proportion of flowering shoots (% flowering by density) using a GLM with a quasi binomial distribution and logit link function with site, depth, and time (week) as our fixed effects and including all possible interactions. For all of these analyses week was treated as a categorical factor.
Statistical analyses were conducted using R Statistical Software v. 3.6.0 (R Core Team 2019). Negative binomial regressions were done using the glm.nb function in the MASS package (Venables and Ripley 2002). We used a significance level of α = 0.05 for all of our analyses.
BCO-DMO Processing:
- changed date format to YYYY-MM-DD;
- renamed fields to conform with BCO-DMO naming conventions;
- replaced "NA" with "nd" to indicate "no data".
File |
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permanent_plot_density.csv (Comma Separated Values (.csv), 10.02 KB) MD5:2060ef8d775aa7737924edd66fff5ddc Primary data file for dataset ID 847062 |
Parameter | Description | Units |
Date | The date of sample collection; format: YYYY-MM-DD | unitless |
Month | The month of the survey (June or August) *one of the first surveys was conducted on July 1, but is counted as June. | unitless |
Site | The site of collection. WB (West Beach, Beverly, MA), DC (Curlew Beach, Nahant, MA), NB (Niles Beach, Gloucester, MA), or LP (Lynch Park, Beverly, MA) | unitless |
Depth | SH (shallow zone) or DP (deep zone) | unitless |
Permanent_Quadrat | For the first surveys (June/July) the permanent quadrat that data came from (there are 3 permanent quadrats per depth per site) | unitless |
Transect_Meter_Mark | For the second surveys (August), the corresponding transect meter mark that samples were taken from | unitless |
Cattle_Tag | For the first round of sampling, the corresponding cattle tag number for each sample | unitless |
Vegetative_Density | The number of vegetative shoots in each quadrat | number of shoots per quadrat |
Flowering_Density | The number of flowering shoots in each quadrat | number of shoots per quadrat |
Total_Density | The number of vegetative AND flowering shoots found in each quadrat | number of shoots per quadrat |
NSF Award Abstract:
Understanding how species cope with spatial variation in their environment (e.g. gradients in light and temperature) is necessary for informed management as well as for predicting how they may respond to change. This project will examine how key traits vary with depth in common eelgrass (Zostera marina), one of the most important foundation species in temperate nearshore ecosystems worldwide. The investigators will use a combination of experiments in the field and lab, paired with fine-scale molecular analyses, to determine the genetic and environmental components of seagrass trait variation. This work will provide important information on the microevolutionary mechanisms that allow a foundation species to persist in a variable environment, and thus to drive the ecological function of whole nearshore communities. The Northeastern University graduate and Keene State College (KSC) undergraduate students supported by this project will receive training in state-of-the-art molecular techniques, as well as mentorship and experience in scientific communication and outreach. A significant portion of KSC students are from groups under-represented in science. Key findings of the research will be incorporated into undergraduate courses and outreach programs for high school students from under-represented groups, and presented at local and national meetings of scientists and stakeholders.
Local adaptation, the superior performance of "home" versus "foreign" genotypes in a local environment, is a powerful demonstration of how natural selection can overcome gene flow and drift to shape phenotypes to match their environment. The classic test for local adaptation is a reciprocal transplant. However, such experiments often fail to capture critical aspects of the immigration process that may mediate realized gene flow in natural systems. For example, reciprocal transplant experiments typically test local and non-local phenotypes at the same (often adult) life history stage, and at the same abundance or density, which does not mirror how dispersal actually occurs for most species. In real populations, migrants (non-local) often arrive at low numbers compared to residents (local), and relative frequency itself can impact fitness. In particular, rare phenotypes may experience reduced competition for resources, or relative release from specialized pathogens. Such negative frequency dependent selection can reduce fitness differences between migrants and residents due to local adaptation, and magnify effective gene flow, thus maintaining greater within-population genetic diversity. The investigators will combine spatially paired sampling and fine-scale molecular analyses to link seed/seedling trait variation across the depth gradient at six meadows to key factors that may drive these patterns: local environmental conditions, population demography, and gene flow across depths. The team will then experimentally test the outcome of cross-gradient dispersal in an ecologically relevant context, by reciprocally out-planting seeds from different depths and manipulating relative frequency in relation to both adults and other seedling lineages. The possible interaction between local adaptation and frequency-dependence is particularly relevant for Zostera marina, which represents one of the best documented examples of the ecological effects of genetic diversity and identity. Further, a better understanding of seagrass trait differentiation is not simply a matter of academic interest, but critical to successful seagrass restoration and conservation.
This award reflects NSF's statutory mission and has been deemed worthy of support through evaluation using the Foundation's intellectual merit and broader impacts review criteria.
Funding Source | Award |
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NSF Division of Ocean Sciences (NSF OCE) |