Dataset: Sequences from the coral Acropora cervicornis determined before and after bleaching at the Mote Marine Laboratory in August and September 2015

ValidatedFinal no updates expectedDOI: 10.26008/1912/bco-dmo.847425.1Version 1 (2023-10-27)Dataset Type:Other Field Results

Principal Investigator: Rebecca Vega Thurber (Oregon State University)

Co-Principal Investigator: Erinn M. Muller (Mote Marine Laboratory)

Student, Contact: Grace J. Klinges (Oregon State University)

BCO-DMO Data Manager: Taylor Heyl (Woods Hole Oceanographic Institution)

BCO-DMO Data Manager: Shannon Rauch (Woods Hole Oceanographic Institution)

Project: Collaborative Research: Tracking the interacting roles of the environment, host genotype, and a novel Rickettsiales in coral disease susceptibility (Coral Rickettsiales)

Abstract

This dataset contains information about sequences of coral the Acropora cervicornis collected from host colonies (genets) at the Mote Marine Laboratory in situ coral nursery in Looe Key, Lower Florida Keys, USA in August and September of 2015. The sequence data can be found in the National Center for Biotechnology Information (NCBI) Sequence Read Archive (SRA) database under accession number SRP267474 with the associated BioProject PRJNA639601.

Cite Dataset

Sequence data can be found in the National Center for Biotechnology Information (NCBI) Sequence Read Archive (SRA) database under accession number SRP267474 with the associated BioProject PRJNA639601. Additional metadata related to the NCBI submission are provided in Supplemental File "MIMARKS.specimen.host-associated.5.0.xlsx".

Related Datasets

IsRelatedTo
Dataset: http://www.ncbi.nlm.nih.gov/bioproject/PRJNA639601
Oregon State University. Disease-susceptible and -resistant Acropora cervicornis genotypes before and after bleaching. 2020/06. In: BioProject [Internet]. Bethesda, MD: National Library of Medicine (US), National Center for Biotechnology Information; 2011-. Available from: http://www.ncbi.nlm.nih.gov/bioproject/PRJNA639601. NCBI:BioProject: PRJNA639601.
Software
Dataset: https://doi.org/10.1371/journal.pone.0061217
McMurdie, P. J., & Holmes, S. (2013). phyloseq: An R Package for Reproducible Interactive Analysis and Graphics of Microbiome Census Data. PLoS ONE, 8(4), e61217. doi:10.1371/journal.pone.0061217

Related Publications

Results
Klinges, G., Maher, R. L., Vega Thurber, R. L., & Muller, E. M. (2020). Parasitic 'Candidatus Aquarickettsia rohweri' is a marker of disease susceptibility in Acropora cervicornis but is lost during thermal stress. Environmental Microbiology, 22(12), 5341–5355. Portico. https://doi.org/10.1111/1462-2920.15245
Methods
Apprill, A., McNally, S., Parsons, R., & Weber, L. (2015). Minor revision to V4 region SSU rRNA 806R gene primer greatly increases detection of SAR11 bacterioplankton. Aquatic Microbial Ecology, 75(2), 129–137. doi:10.3354/ame01753
Methods
Baums, I., Hughes, C., & Hellberg, M. (2005). Mendelian microsatellite loci for the Caribbean coral Acropora palmata. Marine Ecology Progress Series, 288, 115–127. doi:10.3354/meps288115
Methods
Durham, B. P., Grote, J., Whittaker, K. A., Bender, S. J., Luo, H., Grim, S. L., Brown, J. M., Casey, J. R., Dron, A., Florez-Leiva, L., Krupke, A., Luria, C. M., Mine, A. H., Nigro, O. D., Pather, S., Talarmin, A., Wear, E. K., Weber, T. S., Wilson, J. M., … Rappé, M. S. (2014). Draft genome sequence of marine alphaproteobacterial strain HIMB11, the first cultivated representative of a unique lineage within the Roseobacter clade possessing an unusually small genome. Standards in Genomic Sciences, 9(3), 632–645. https://doi.org/10.4056/sigs.4998989
Methods
Muller, E. M., Bartels, E., & Baums, I. B. (2018). Bleaching causes loss of disease resistance within the threatened coral species Acropora cervicornis. eLife, 7. doi:10.7554/elife.35066

Klinges, G., Vega Thurber, R., Muller, E. (2023) Sequences from the coral Acropora cervicornis determined before and after bleaching at the Mote Marine Laboratory in August and September 2015. Biological and Chemical Oceanography Data Management Office (BCO-DMO). (Version 1) Version Date 2023-10-27 [if applicable, indicate subset used]. doi:10.26008/1912/bco-dmo.847425.1 [access date]

Terms of Use

This dataset is licensed under Creative Commons Attribution 4.0.


If you wish to use this dataset, it is highly recommended that you contact the original principal investigators (PI). Should the relevant PI be unavailable, please contact BCO-DMO (info@bco-dmo.org) for additional guidance. For general guidance please see the BCO-DMO Terms of Use document.

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Funded by the U.S. National Science Foundation