Dataset: 16S rRNA and genomes of particle associated taxa

ValidatedFinal no updates expectedDOI: 10.26008/1912/bco-dmo.849357.1Version 1 (2021-04-19)Dataset Type:Other Field Results

Principal Investigator: Otto X. Cordero (Massachusetts Institute of Technology)

BCO-DMO Data Manager: Shannon Rauch (Woods Hole Oceanographic Institution)

Project: Microbial interactions on particulate organic matter: from community structure to function (MINTPOM)

Abstract

This dataset includes National Center for Biotechnology Information (NCBI) accession numbers and related information for 16S rRNA and genomes of particle associated taxa. Sequences can be found in NCBI under BioProject PRJNA478695.

Cite Dataset

Our study was based on laboratory enrichments with seawater as the sole inoculum and model marine particles as source of carbon and scaffolds for community assembly. Particles were incubated in 1L Nalgene bottles with overhead rotation and subsequently harvested for genomic analysis and isolation. The data here deposited corresponds to the 16S rRNA of the particle-associated community and the genomes of 7 isolates.

Related Datasets

IsRelatedTo
Dataset: http://www.ncbi.nlm.nih.gov/bioproject/PRJNA478695
Massachusetts Institute of Technology. Marine Bacteria, Modular assembly of carbohydrate-degrading microbial communities in the ocean. 2018/06. In: BioProject [Internet]. Bethesda, MD: National Library of Medicine (US), National Center for Biotechnology Information. Available from: http://www.ncbi.nlm.nih.gov/bioproject/PRJNA478695. NCBI:BioProject: PRJNA478695.

Related Publications

General
Enke, T. N., Datta, M. S., Schwartzman, J., Cermak, N., Schmitz, D., Barrere, J., … Cordero, O. X. (2019). Modular Assembly of Polysaccharide-Degrading Marine Microbial Communities. Current Biology, 29(9), 1528–1535.e6. doi:10.1016/j.cub.2019.03.047

Cordero, O. X. (2021) 16S rRNA and genomes of particle associated taxa. Biological and Chemical Oceanography Data Management Office (BCO-DMO). (Version 1) Version Date 2021-04-19 [if applicable, indicate subset used]. doi:10.26008/1912/bco-dmo.849357.1 [access date]

Terms of Use

This dataset is licensed under Creative Commons Attribution 4.0.


If you wish to use this dataset, it is highly recommended that you contact the original principal investigators (PI). Should the relevant PI be unavailable, please contact BCO-DMO (info@bco-dmo.org) for additional guidance. For general guidance please see the BCO-DMO Terms of Use document.

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Funded by the U.S. National Science Foundation