Phytoplankton diagnostic pigments from HPLC from samples collected on R/V Endeavor cruise EN640 in the tropical North Atlantic during June-July 2019

Website: https://www.bco-dmo.org/dataset/866351
Data Type: Cruise Results
Version: 1
Version Date: 2021-12-08

Project
» Collaborative Research: Impact of the Amazon River Plume on Nitrogen Availability and Planktonic Food Web Dynamics in the Western Tropical North Atlantic (Amazon River Plume Nitrogen)
ContributorsAffiliationRole
Subramaniam, AjitLamont-Doherty Earth Observatory (LDEO)Principal Investigator
Rauch, ShannonWoods Hole Oceanographic Institution (WHOI BCO-DMO)BCO-DMO Data Manager

Abstract
This dataset includes phytoplankton diagnostic pigments from HPLC from samples collected on R/V Endeavor cruise EN640 in the tropical North Atlantic during June-July 2019. These data are also available through NASA's SeaBASS repository.


Coverage

Spatial Extent: N:16.0128 E:-50.384 S:4.87925 W:-60.0025
Temporal Extent: 2019-06-15 - 2019-07-07

Methods & Sampling

The samples were collected using a CTD rosette and an appropriate volume of water was filtered through a 25mm GF/F filter soon after collection. The filters were then stored in liquid nitrogen until analyzed.

The diagnostic pigments were measured using High-performance liquid chromatography as detailed in Van Heukelem and Thomas (2001) and Hooker et al (2005).

The HPLC used for pigment analysis is an Agilent RR1200 with a programmable autoinjector (900 ul syringe head), refrigerated autosampler, degasser, and photo-diode array detector with deuterium and tungsten lamps. The HPLC is controlled by Agilent Chemstation software. The 4.6 x 150 mm HPLC Eclipse XDB column (Agilent Technologies, Palo Alto, CA) is filled with a C8 stationary phase (3.5 um stationary phase); the mobile phase consists of a linear gradient from 5-95% solvent B over the 27 minutes, for which solvent A is 70 parts methanol, 30 parts 28 mM tetrabutylammononium acetate (pH 6.5) and solvent B is methanol. The column temperature is 60 C and the photo diode array detector is set to plot chromatograms at 450, 665, and 222 nm to acquire visible absorbance spectra between 350 and 750 nm.


Data Processing Description

BCO-DMO Processing:
- renamed fields to comply with BCO-DMO naming conventions;
- created ISO_DateTime_UTC field.


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Data Files

File
EN640_HPLC.csv
(Comma Separated Values (.csv), 32.16 KB)
MD5:2ca1e56d614286e22e3d0cfe987891fd
Primary data file for dataset ID 866351

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Parameters

ParameterDescriptionUnits
Cruise

Cruise ID

unitless
Station

Station ID

unitless
Date

Date; format: mon-DD-YYYY

unitless
Year

4-digit year

unitless
Month

Month

unitless
Day

Day of month

unitless
Time_GMT

Time (GMT); format: hh:mm:ss

unitless
ISO_DateTime_UTC

Date and time (UTC) formatted to ISO8601 standard. Format: yyyy-mm-ddTHH:MM:SSZ (Z indicates UTC)

unitless
Julian_day

Julian day number

unitless
Total_Depth

Depth of the water column at the location the sample was collected as measured by the ship's echo sounder (bottom depth)

meters (m)
Latitude

Latitude (negative = south)

decimal degrees North
Longitude

Longitude (negative = west)

decimal degrees East
Niskin

Niskin bottle number

unitless
Depth

Depth of sample

meters (m)
Temperature

Temperature

degrees Celsius
salinity

Salinity

PSU
BeamC

Beam attenuation

reciprocal meters (m-1)
Trans

Percent light transmission

unitless (percent)
Fluorometer

Fluorescence

milligrams per cubic meter (mg/m3)
PAR

PAR

microEinsteins
Surface_PAR

Surface PAR

microEinsteins
sample

Sample ID

unitless
volfilt

Volume of water filtered

liters (L)
Tot_Chl_a

total chlorophyll a; DV_Chl_a + MV_Chl_a + Chlide_a + Chl_a allomers + Chl_a epimers

milligrams per cubic meter (mg/m3)
Tot_Chl_b

total chlorophyll b; DV_Chl_b + MV_Chl_b + Chl_b epimers

milligrams per cubic meter (mg/m3)
Tot_Chl_c

total chlorophyll c; Chl_c3 + Chl_c1c2

milligrams per cubic meter (mg/m3)
Alpha_beta_Car

carotenes; alpha (beta, epsilon) + beta (beta, beta) carotene. Unresolved and therefore undifferentiated.

milligrams per cubic meter (mg/m3)
But_fuco

19'-butanoyloxyfucoxanthin

milligrams per cubic meter (mg/m3)
Hex_fuco

19'-hexanoyloxyfucoxanthin

milligrams per cubic meter (mg/m3)
Allo

alloxanthin

milligrams per cubic meter (mg/m3)
Diadino

diadinoxanthin

milligrams per cubic meter (mg/m3)
Diato

diatoxanthin

milligrams per cubic meter (mg/m3)
Fuco

fucoxanthin

milligrams per cubic meter (mg/m3)
Perid

Peridinin

milligrams per cubic meter (mg/m3)
Zea

Zeaxanthin

milligrams per cubic meter (mg/m3)
MV_Chl_a

monovinyl chlorophyll a

milligrams per cubic meter (mg/m3)
DV_Chl_a

divinyl chlorophyll a

milligrams per cubic meter (mg/m3)
Chlide_a

chlorophyllide a

milligrams per cubic meter (mg/m3)
MV_Chl_b

monovinyl chlorophyll b

milligrams per cubic meter (mg/m3)
DV_Chl_b

divinyl chlorophyll b

milligrams per cubic meter (mg/m3)
Chl_c1c2

Chlorophyll c2 + chlorophyll c1 + MGDVP Mg-2,4-divnyl pheoporphyrin a5 monomethyl ester

milligrams per cubic meter (mg/m3)
Chl_c3

Chlorophyll c3

milligrams per cubic meter (mg/m3)
Lut

Lutein

milligrams per cubic meter (mg/m3)
Neo

Neoxanthin

milligrams per cubic meter (mg/m3)
Viola

Violaxanthin

milligrams per cubic meter (mg/m3)
Phytin_a

total pheophorbide a; multiple peaks

milligrams per cubic meter (mg/m3)
Phide_a

total pheophytin a; pheophytin a + pheophytin a'

milligrams per cubic meter (mg/m3)
Pras

Prasinoxanthin

milligrams per cubic meter (mg/m3)
Gyro

Gyroxanthin diester

milligrams per cubic meter (mg/m3)
Tchl

total chlorophylls; Tot_Chl_a +Tot_Chl_b +Tot_Chl_c

milligrams per cubic meter (mg/m3)
PPC

photoprotective carotenoids; allo + diadino + diato + zea + alpha-beta-car

milligrams per cubic meter (mg/m3)
PSC

photosynthetic carotenoids; but-fuco + fuco + hex-fuco + perid

milligrams per cubic meter (mg/m3)
PSP

photosynthetic pigments; PSC + TChl

milligrams per cubic meter (mg/m3)
Tcar

total carotenoids; PPC + PSC

milligrams per cubic meter (mg/m3)
Tacc

total accessory pigments; PPC + PSC + Tot_Chl_b + Tot_Chl_c

milligrams per cubic meter (mg/m3)
Tpg

total pigments; TAcc + Tot_Chl_a

milligrams per cubic meter (mg/m3)
DP

total diagnostic pigments; PSC + allo + zea + Tot_Chl_b

milligrams per cubic meter (mg/m3)
Tacc_Tchla

ratio of total accessory pigments to total chlorophyll a; [Tacc]/[Tchla]

unitless (ratio)
PSC_Tcar

ratio of photosynthetic carotenoids to total carotenoids; [PSC]/[TCar]

unitless (ratio)
PPC_Tcar

ratio of photoprotective carotenoids to total carotenoids; [PPC]/[Tcar]

unitless (ratio)
Tchl_Tcar

ratio of total chlorophyll to total carotenoids; [TChl]/[TCaro]

unitless (ratio)
PPC_Tpg

ratio of photoprotective carotenoids to total pigments; [PPC]/[Tpg]

unitless (ratio)
PSP_Tpg

ratio of photosynthetic pigments to total pigments; [PSP]/[TPg]

unitless (ratio)
Tchl_a_Tpg

ratio of total chlorophyll a to total pigments; [TChla]/[TPg]

unitless (ratio)


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Instruments

Dataset-specific Instrument Name
Agilent RR1200
Generic Instrument Name
High-Performance Liquid Chromatograph
Dataset-specific Description
The HPLC used for pigment analysis is an Agilent RR1200 with a programmable autoinjector (900 ul syringe head), refrigerated autosampler, degasser, and photo-diode array detector with deuterium and tungsten lamps.
Generic Instrument Description
A High-performance liquid chromatograph (HPLC) is a type of liquid chromatography used to separate compounds that are dissolved in solution. HPLC instruments consist of a reservoir of the mobile phase, a pump, an injector, a separation column, and a detector. Compounds are separated by high pressure pumping of the sample mixture onto a column packed with microspheres coated with the stationary phase. The different components in the mixture pass through the column at different rates due to differences in their partitioning behavior between the mobile liquid phase and the stationary phase.


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Deployments

EN640

Website
Platform
R/V Endeavor
Start Date
2019-06-13
End Date
2019-07-08
Description
See more information from the Rolling Deck to Repository (R2R): https://www.rvdata.us/search/cruise/EN640


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Project Information

Collaborative Research: Impact of the Amazon River Plume on Nitrogen Availability and Planktonic Food Web Dynamics in the Western Tropical North Atlantic (Amazon River Plume Nitrogen)

Coverage: Amazon River plume


NSF Award Abstract:
This is a focused program of field research in waters of the Western Tropical North Atlantic influenced by the Amazon River Plume during the high river flow season. The Amazon Plume region supports diverse plankton communities in a dynamic system driven by nutrients supplied by transport from the river proper as well as nutrients entrained from offshore waters by physical mixing and upwelling. This creates strong interactions among physical, chemical, and biological processes across a range of spatial and temporal scales. The field program will link direct measurements of environmental properties with focused experimental studies of nutrient supply and nutrient limitation of phytoplankton, as well as the transfer of phytoplankton nitrogen to the zooplankton food web. The Amazon Plume exhibits a close juxtaposition of distinct communities during the high-flow season, making it an ideal site for evaluating how nutrient availability, nutrient supply, and habitat longevity interact to drive offshore ecosystem dynamics and function. This project will include German collaborators and will seamlessly integrate education and research efforts. The investigators and their institutions have a strong commitment to undergraduate and graduate education and to increasing the diversity of the ocean science community through active recruiting and training efforts. The team has a strong track record of involving both undergraduate and graduate students in their field and lab research. The two research cruises planned will provide opportunities for students and technicians to interact with an interdisciplinary and international research team.

The ultimate objectives of this project are to understand the processes and interactions that promote distinct communities of nitrogen-fixing organisms (diazotrophs) and other phytoplankton around the Amazon Plume and to explore the impacts of these diazotroph-rich communities on zooplankton biomass and production. The research team includes scientists with expertise in nutrient and stable isotope biogeochemistry, remote sensing as well as specialists in characterizing water mass origin and history using naturally occurring radium isotopes. This combination of approaches will provide a unique opportunity to address fundamental questions related to plankton community structure, primary production, and links to secondary production in pelagic ecosystems. The project will address the following key questions focused on fundamental issues in plankton ecology resulting from previous research in this region:

A. What mechanisms promote the preferential delivery of bioavailable phosphorus and the resulting strong nitrogen limitation associated with the northern reaches of the Amazon Plume during the high flow season?

B. What factors lead to the clear niche separation between diazotrophs within and around the Amazon Plume and how are the distinct diazotroph communities influenced by hydrographic and biogeochemical controls associated with the Amazon River Plume and offshore upwelling processes?

C. How does the nitrogen fixed by the different types of diazotrophs contribute to secondary production, and how efficiently does diazotroph nitrogen move through the food web?



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Funding

Funding SourceAward
NSF Division of Ocean Sciences (NSF OCE)

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