Contributors | Affiliation | Role |
---|---|---|
Subramaniam, Ajit | Lamont-Doherty Earth Observatory (LDEO) | Principal Investigator |
Rauch, Shannon | Woods Hole Oceanographic Institution (WHOI BCO-DMO) | BCO-DMO Data Manager |
The samples were collected using a CTD rosette and an appropriate volume of water was filtered through a 25mm GF/F filter soon after collection. The filters were then stored in liquid nitrogen until analyzed.
The diagnostic pigments were measured using High-performance liquid chromatography as detailed in Van Heukelem and Thomas (2001) and Hooker et al (2005).
The HPLC used for pigment analysis is an Agilent RR1200 with a programmable autoinjector (900 ul syringe head), refrigerated autosampler, degasser, and photo-diode array detector with deuterium and tungsten lamps. The HPLC is controlled by Agilent Chemstation software. The 4.6 x 150 mm HPLC Eclipse XDB column (Agilent Technologies, Palo Alto, CA) is filled with a C8 stationary phase (3.5 um stationary phase); the mobile phase consists of a linear gradient from 5-95% solvent B over the 27 minutes, for which solvent A is 70 parts methanol, 30 parts 28 mM tetrabutylammononium acetate (pH 6.5) and solvent B is methanol. The column temperature is 60 C and the photo diode array detector is set to plot chromatograms at 450, 665, and 222 nm to acquire visible absorbance spectra between 350 and 750 nm.
BCO-DMO Processing:
- renamed fields to comply with BCO-DMO naming conventions;
- created ISO_DateTime_UTC field.
File |
---|
EN640_HPLC.csv (Comma Separated Values (.csv), 32.16 KB) MD5:2ca1e56d614286e22e3d0cfe987891fd Primary data file for dataset ID 866351 |
Parameter | Description | Units |
Cruise | Cruise ID | unitless |
Station | Station ID | unitless |
Date | Date; format: mon-DD-YYYY | unitless |
Year | 4-digit year | unitless |
Month | Month | unitless |
Day | Day of month | unitless |
Time_GMT | Time (GMT); format: hh:mm:ss | unitless |
ISO_DateTime_UTC | Date and time (UTC) formatted to ISO8601 standard. Format: yyyy-mm-ddTHH:MM:SSZ (Z indicates UTC) | unitless |
Julian_day | Julian day number | unitless |
Total_Depth | Depth of the water column at the location the sample was collected as measured by the ship's echo sounder (bottom depth) | meters (m) |
Latitude | Latitude (negative = south) | decimal degrees North |
Longitude | Longitude (negative = west) | decimal degrees East |
Niskin | Niskin bottle number | unitless |
Depth | Depth of sample | meters (m) |
Temperature | Temperature | degrees Celsius |
salinity | Salinity | PSU |
BeamC | Beam attenuation | reciprocal meters (m-1) |
Trans | Percent light transmission | unitless (percent) |
Fluorometer | Fluorescence | milligrams per cubic meter (mg/m3) |
PAR | PAR | microEinsteins |
Surface_PAR | Surface PAR | microEinsteins |
sample | Sample ID | unitless |
volfilt | Volume of water filtered | liters (L) |
Tot_Chl_a | total chlorophyll a; DV_Chl_a + MV_Chl_a + Chlide_a + Chl_a allomers + Chl_a epimers | milligrams per cubic meter (mg/m3) |
Tot_Chl_b | total chlorophyll b; DV_Chl_b + MV_Chl_b + Chl_b epimers | milligrams per cubic meter (mg/m3) |
Tot_Chl_c | total chlorophyll c; Chl_c3 + Chl_c1c2 | milligrams per cubic meter (mg/m3) |
Alpha_beta_Car | carotenes; alpha (beta, epsilon) + beta (beta, beta) carotene. Unresolved and therefore undifferentiated. | milligrams per cubic meter (mg/m3) |
But_fuco | 19'-butanoyloxyfucoxanthin | milligrams per cubic meter (mg/m3) |
Hex_fuco | 19'-hexanoyloxyfucoxanthin | milligrams per cubic meter (mg/m3) |
Allo | alloxanthin | milligrams per cubic meter (mg/m3) |
Diadino | diadinoxanthin | milligrams per cubic meter (mg/m3) |
Diato | diatoxanthin | milligrams per cubic meter (mg/m3) |
Fuco | fucoxanthin | milligrams per cubic meter (mg/m3) |
Perid | Peridinin | milligrams per cubic meter (mg/m3) |
Zea | Zeaxanthin | milligrams per cubic meter (mg/m3) |
MV_Chl_a | monovinyl chlorophyll a | milligrams per cubic meter (mg/m3) |
DV_Chl_a | divinyl chlorophyll a | milligrams per cubic meter (mg/m3) |
Chlide_a | chlorophyllide a | milligrams per cubic meter (mg/m3) |
MV_Chl_b | monovinyl chlorophyll b | milligrams per cubic meter (mg/m3) |
DV_Chl_b | divinyl chlorophyll b | milligrams per cubic meter (mg/m3) |
Chl_c1c2 | Chlorophyll c2 + chlorophyll c1 + MGDVP Mg-2,4-divnyl pheoporphyrin a5 monomethyl ester | milligrams per cubic meter (mg/m3) |
Chl_c3 | Chlorophyll c3 | milligrams per cubic meter (mg/m3) |
Lut | Lutein | milligrams per cubic meter (mg/m3) |
Neo | Neoxanthin | milligrams per cubic meter (mg/m3) |
Viola | Violaxanthin | milligrams per cubic meter (mg/m3) |
Phytin_a | total pheophorbide a; multiple peaks | milligrams per cubic meter (mg/m3) |
Phide_a | total pheophytin a; pheophytin a + pheophytin a' | milligrams per cubic meter (mg/m3) |
Pras | Prasinoxanthin | milligrams per cubic meter (mg/m3) |
Gyro | Gyroxanthin diester | milligrams per cubic meter (mg/m3) |
Tchl | total chlorophylls; Tot_Chl_a +Tot_Chl_b +Tot_Chl_c | milligrams per cubic meter (mg/m3) |
PPC | photoprotective carotenoids; allo + diadino + diato + zea + alpha-beta-car | milligrams per cubic meter (mg/m3) |
PSC | photosynthetic carotenoids; but-fuco + fuco + hex-fuco + perid | milligrams per cubic meter (mg/m3) |
PSP | photosynthetic pigments; PSC + TChl | milligrams per cubic meter (mg/m3) |
Tcar | total carotenoids; PPC + PSC | milligrams per cubic meter (mg/m3) |
Tacc | total accessory pigments; PPC + PSC + Tot_Chl_b + Tot_Chl_c | milligrams per cubic meter (mg/m3) |
Tpg | total pigments; TAcc + Tot_Chl_a | milligrams per cubic meter (mg/m3) |
DP | total diagnostic pigments; PSC + allo + zea + Tot_Chl_b | milligrams per cubic meter (mg/m3) |
Tacc_Tchla | ratio of total accessory pigments to total chlorophyll a; [Tacc]/[Tchla] | unitless (ratio) |
PSC_Tcar | ratio of photosynthetic carotenoids to total carotenoids; [PSC]/[TCar] | unitless (ratio) |
PPC_Tcar | ratio of photoprotective carotenoids to total carotenoids; [PPC]/[Tcar] | unitless (ratio) |
Tchl_Tcar | ratio of total chlorophyll to total carotenoids; [TChl]/[TCaro] | unitless (ratio) |
PPC_Tpg | ratio of photoprotective carotenoids to total pigments; [PPC]/[Tpg] | unitless (ratio) |
PSP_Tpg | ratio of photosynthetic pigments to total pigments; [PSP]/[TPg] | unitless (ratio) |
Tchl_a_Tpg | ratio of total chlorophyll a to total pigments; [TChla]/[TPg] | unitless (ratio) |
Dataset-specific Instrument Name | Agilent RR1200 |
Generic Instrument Name | High-Performance Liquid Chromatograph |
Dataset-specific Description | The HPLC used for pigment analysis is an Agilent RR1200 with a programmable autoinjector (900 ul syringe head), refrigerated autosampler, degasser, and photo-diode array detector with deuterium and tungsten lamps. |
Generic Instrument Description | A High-performance liquid chromatograph (HPLC) is a type of liquid chromatography used to separate compounds that are dissolved in solution. HPLC instruments consist of a reservoir of the mobile phase, a pump, an injector, a separation column, and a detector. Compounds are separated by high pressure pumping of the sample mixture onto a column packed with microspheres coated with the stationary phase. The different components in the mixture pass through the column at different rates due to differences in their partitioning behavior between the mobile liquid phase and the stationary phase. |
Website | |
Platform | R/V Endeavor |
Start Date | 2019-06-13 |
End Date | 2019-07-08 |
Description | See more information from the Rolling Deck to Repository (R2R): https://www.rvdata.us/search/cruise/EN640 |
NSF Award Abstract:
This is a focused program of field research in waters of the Western Tropical North Atlantic influenced by the Amazon River Plume during the high river flow season. The Amazon Plume region supports diverse plankton communities in a dynamic system driven by nutrients supplied by transport from the river proper as well as nutrients entrained from offshore waters by physical mixing and upwelling. This creates strong interactions among physical, chemical, and biological processes across a range of spatial and temporal scales. The field program will link direct measurements of environmental properties with focused experimental studies of nutrient supply and nutrient limitation of phytoplankton, as well as the transfer of phytoplankton nitrogen to the zooplankton food web. The Amazon Plume exhibits a close juxtaposition of distinct communities during the high-flow season, making it an ideal site for evaluating how nutrient availability, nutrient supply, and habitat longevity interact to drive offshore ecosystem dynamics and function. This project will include German collaborators and will seamlessly integrate education and research efforts. The investigators and their institutions have a strong commitment to undergraduate and graduate education and to increasing the diversity of the ocean science community through active recruiting and training efforts. The team has a strong track record of involving both undergraduate and graduate students in their field and lab research. The two research cruises planned will provide opportunities for students and technicians to interact with an interdisciplinary and international research team.
The ultimate objectives of this project are to understand the processes and interactions that promote distinct communities of nitrogen-fixing organisms (diazotrophs) and other phytoplankton around the Amazon Plume and to explore the impacts of these diazotroph-rich communities on zooplankton biomass and production. The research team includes scientists with expertise in nutrient and stable isotope biogeochemistry, remote sensing as well as specialists in characterizing water mass origin and history using naturally occurring radium isotopes. This combination of approaches will provide a unique opportunity to address fundamental questions related to plankton community structure, primary production, and links to secondary production in pelagic ecosystems. The project will address the following key questions focused on fundamental issues in plankton ecology resulting from previous research in this region:
A. What mechanisms promote the preferential delivery of bioavailable phosphorus and the resulting strong nitrogen limitation associated with the northern reaches of the Amazon Plume during the high flow season?
B. What factors lead to the clear niche separation between diazotrophs within and around the Amazon Plume and how are the distinct diazotroph communities influenced by hydrographic and biogeochemical controls associated with the Amazon River Plume and offshore upwelling processes?
C. How does the nitrogen fixed by the different types of diazotrophs contribute to secondary production, and how efficiently does diazotroph nitrogen move through the food web?
Funding Source | Award |
---|---|
NSF Division of Ocean Sciences (NSF OCE) |