Microbial activity from sediments collected Fall 2019 in the Santa Barbara Basin using ROV Jason during R/V Atlantis cruise AT42-19

Website: https://www.bco-dmo.org/dataset/867221
Data Type: Cruise Results
Version: 1
Version Date: 2021-12-28

Project
» Collaborative Research: Do benthic feedbacks couple sulfur, nitrogen and carbon biogeochemistry during transient deoxygenation? (BASIN)
ContributorsAffiliationRole
Treude, TinaUniversity of California-Los Angeles (UCLA)Principal Investigator, Contact
Valentine, David L.University of California-Santa Barbara (UCSB)Co-Principal Investigator
Gerlach, Dana StuartWoods Hole Oceanographic Institution (WHOI BCO-DMO)BCO-DMO Data Manager

Abstract
Sediments were collected in Fall 2019 across three transects in the Santa Barbara Basin using the ROV Jason during R/V Atlantis cruise AT42-19. Microbial activity in the sediments was determined by measuring sulfate reduction rates.


Coverage

Spatial Extent: N:34.36270433 E:-120.0147509 S:34.14209313 W:-120.1164661
Temporal Extent: 2019-10-31 - 2019-11-09

Methods & Sampling

Sediments were collected with push cores (6 cm inner diameter) along three depth transects across the Santa Barbara Basin using the ROV Jason. 

Sulfate reduction rates were determined by injecting carrier-free 35S-Sulfate into intact whole round cores (2.8 cm inner diameter) according to Jørgensen (1978) and incubated for 1 day. Sediment samples were then analyzed according to the cold-chromium distillation (Kallmeyer et al., 2004).


Data Processing Description

BCO-DMO Data Processing
- Imported data from source file "Treude_Valentine_BASIN_2019_datasets_BCO-DMO.xlsx" into the BCO-DMO processing tool
- Combined data from multiple stations into a single file
- Separated data for porewater, microbial, and sediment into individual tables
- Modified parameter (column) names to conform with BCO-DMO naming conventions
      The only allowed characters are A-Z,a-z,0-9, and underscores
       No spaces, hyphens, commas, parentheses, or Greek letters

- Added column for Cruise
- Changed date format from m/d/yyyy to yyyy-mm-dd (ISO Date 8601 format)
- Added conventional header with dataset name, PI name, version date


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Related Publications

Jorgensen, B. B. (1978). A comparison of methods for the quantification of bacterial sulfate reduction in coastal marine sediments. Geomicrobiology Journal, 1(1), 11–27. doi:10.1080/01490457809377721
Methods
Kallmeyer, J., Ferdelman, T. G., Weber, A., Fossing, H., & Jørgensen, B. B. (2004). A cold chromium distillation procedure for radiolabeled sulfide applied to sulfate reduction measurements. Limnology and Oceanography: Methods, 2(6), 171–180. doi:10.4319/lom.2004.2.171
Methods

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Related Datasets

IsRelatedTo
Treude, T., Valentine, D. L. (2022) Porewater geochemistry of sediments collected Fall 2019 in the Santa Barbara Basin using ROV Jason during R/V Atlantis cruise AT42-19. Biological and Chemical Oceanography Data Management Office (BCO-DMO). (Version 1) Version Date 2021-12-23 doi:10.26008/1912/bco-dmo.867007.1 [view at BCO-DMO]
Treude, T., Valentine, D. L. (2022) Porosity and density of sediments collected Fall 2019 in the Santa Barbara Basin using ROV Jason during R/V Atlantis cruise AT42-19. Biological and Chemical Oceanography Data Management Office (BCO-DMO). (Version 1) Version Date 2021-12-28 doi:10.26008/1912/bco-dmo.867113.1 [view at BCO-DMO]

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Parameters

ParameterDescriptionUnits
Cruise

Cruise ID

unitless
Location

Sampling and cruise location

unitless
Latitude

Latitude of sample collection

decimal degrees
Longitude

Longitude of sample collection; west is negative

decimal degrees
ISO_DateTime_UTC

Date and time in ISO8601 standard format (YYYY-MM-DDThh:mm:ssZ)

unitless
Station

Station

unitless
Water_Depth

Water depth at sampling location

meters (m)
Sampling_Instrument

Type of coring instrument used to obtain sediments

unitless
Sediment_Depth

Depth of sediment core

centimeters (cm)
Sulfate_Reduction_Rate

Bacterial sulfate reduction rate

nanomoles per cubic centimeter per day (nmol/cm3/d)


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Instruments

Dataset-specific Instrument Name
Gravity Core
Generic Instrument Name
Gravity Corer
Generic Instrument Description
The gravity corer allows researchers to sample sediment layers at the bottom of lakes or oceans. The coring device is deployed from the ship and gravity carries it to the seafloor. (http://www.whoi.edu/instruments/viewInstrument.do?id=1079).

Dataset-specific Instrument Name
ROV push cores
Generic Instrument Name
Push Corer
Dataset-specific Description
Sediments were collected with push cores (6 cm i.d.) along three depth transects across the Santa Barbara Basin using the ROV Jason.
Generic Instrument Description
Capable of being performed in numerous environments, push coring is just as it sounds. Push coring is simply pushing the core barrel (often an aluminum or polycarbonate tube) into the sediment by hand. A push core is useful in that it causes very little disturbance to the more delicate upper layers of a sub-aqueous sediment. Description obtained from: http://web.whoi.edu/coastal-group/about/how-we-work/field-methods/coring/

Dataset-specific Instrument Name
ROV Jason
Generic Instrument Name
ROV Jason
Dataset-specific Description
Sediments were collected with push cores in the Santa Barbara Basin using the ROV Jason.
Generic Instrument Description
The Remotely Operated Vehicle (ROV) Jason is operated by the Deep Submergence Laboratory (DSL) at Woods Hole Oceanographic Institution (WHOI). WHOI engineers and scientists designed and built the ROV Jason to give scientists access to the seafloor that didn't require them leaving the deck of the ship. Jason is a two-body ROV system. A 10-kilometer (6-mile) fiber-optic cable delivers electrical power and commands from the ship through Medea and down to Jason, which then returns data and live video imagery. Medea serves as a shock absorber, buffering Jason from the movements of the ship, while providing lighting and a bird’s eye view of the ROV during seafloor operations. During each dive (deployment of the ROV), Jason pilots and scientists work from a control room on the ship to monitor Jason’s instruments and video while maneuvering the vehicle and optionally performing a variety of sampling activities. Jason is equipped with sonar imagers, water samplers, video and still cameras, and lighting gear. Jason’s manipulator arms collect samples of rock, sediment, or marine life and place them in the vehicle’s basket or on "elevator" platforms that float heavier loads to the surface. More information is available from the operator site at URL.


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Deployments

AT42-19

Website
Platform
R/V Atlantis
Start Date
2019-10-29
End Date
2019-11-10
Description
BASIN project cruise to study chemical processes that occur in oxygen-limited waters along the continental margins. See more information at R2R: https://www.rvdata.us/search/cruise/AT42-19


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Project Information

Collaborative Research: Do benthic feedbacks couple sulfur, nitrogen and carbon biogeochemistry during transient deoxygenation? (BASIN)

Coverage: Santa Barbara Basin, California, USA


NSF Award Abstract:
This study focuses on chemical processes that occur in oxygen-limited waters along the world's continental margins. These processes are influenced by the activities of microbes and control the fate of key elements that are deposited to sediments in these areas including carbon, nitrogen and sulfur. As a result, they are key to the health and function of the ocean. The intellectual merit of this research is to study the coupled chemical and microbial processes that occur in these environments by combining robotic technology with experiments that will be conducted at the ocean floor and in the shipboard laboratory. The broader impacts of this project will provide at-sea training and educational opportunities to undergraduate and graduate students and the results will be broadly distributed to stakeholders and interested parties. Results from this research promise to identify and quantify rates for key processes that couple carbon, nitrogen and sulfur in marine environments adjacent to the continents. The project addresses an important aspect of environmental change in the ocean (i.e., decreased oxygen due to warming and nutrient enrichment) and its influence on chemical and biological cycles and ocean ecosystems.

The dynamics of oxygen minimum zones along continental margins, and their potential for future expansion, are important because of their intersection with global biogeochemical cycles and because of their far-reaching impacts on ocean ecosystems. However, the impacts of transient deoxygenation on biogeochemical cycles of carbon, nitrogen and sulfur at the sea floor are not well established and are the focus of this study. This study will test the overarching hypothesis that deoxygenation triggers a positive feedback loop between bacterial mats at the sea floor that consume hydrogen sulfide, a sulfur species that can be toxic to higher organisms, and an underlying community of bacteria that produce hydrogen sulfide. By this hypothesis, the establishment of sea floor mats, which depend on inorganic nitrogen sources to run their sulfur metabolism, accelerates nitrogen cycling in the uppermost sediment horizon following deoxygenation. The accelerated nitrogen cycling allows for upward expansion of the sulfide-producing bacteria, which in-turn provide a shallow source of sulfide as substrate to further support nitrogen cycling in the sea floor mat. The results of this study will enable understanding of the relationship between oxygen dynamics in the water column and the biogeochemical processes at the sea floor that link the transformations of carbon, nitrogen and sulfur. The results of this study promise to define the environmental conditions under which the sulfur and nitrogen cycles are coupled and subject to strong positive feedbacks at the seafloor, as well as the conditions under which they are decoupled. This study provides training in research and innovative analytical and experimental techniques to four graduate students and several undergraduates. Undergraduates will be engaged in research at two institutions, one of which has recently been designated as a Hispanic serving institution. Approximately 10 undergraduate students (20 in total) will participate in each of the two proposed oceanographic expeditions, through an established course entitled: Field Studies in Marine Biogeochemistry. This course provides an opportunity for students to develop an independent research project in advance of the expedition, to participate on the expedition, and to conduct research projects while at sea.

This award reflects NSF's statutory mission and has been deemed worthy of support through evaluation using the Foundation's intellectual merit and broader impacts review criteria.



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Funding

Funding SourceAward
NSF Division of Ocean Sciences (NSF OCE)
NSF Division of Ocean Sciences (NSF OCE)

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