Contributors | Affiliation | Role |
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John, Seth G. | University of Southern California (USC) | Principal Investigator |
Bian, Xiaopeng | University of Southern California (USC) | Student |
Yang, Shun-Chung | University of Southern California (USC) | Contact |
Rauch, Shannon | Woods Hole Oceanographic Institution (WHOI BCO-DMO) | BCO-DMO Data Manager |
Samples were obtained from the GEOTRACES GP15 cruise aboard the R/V Roger Revelle (RR1814 from September 18 to October 21 of 2018, and RR1815 from October 24 to November 23 of 2018). The Revelle was equipped with the GEOTRACES CTD/rosette (Model 32G, Sea-Bird Electronics). This rosette contained 24 Teflon-coated 12-liter (L) GO-FLO bottles for trace metal clean sampling (Model 10812 T, General Oceanics) with sensors for dissolved oxygen, conductivity, chlorophyll fluorescence, pressure, beam transmittance, and temperature. These samples were preserved by filtering them through 0.2-micrometer (µm) Acropak-200 Supor capsule filter (Pall Corporation) and storing them in acid-washed 1 L Low-Density Polyethylene (Nalgene; LDPE) bottles. Samples (1L) were acidified to pH = 1.8 with 1 mL concentrated distilled HCl and added with 1 mL 30% H2O2 (Optimaᵀᴹ grade; Fisher; CAS#: 7722-84-1), and left for over 1 month.
Metal concentration analyses were identical to those used in Hawco et al. (2020). For each sample, 15 milliliters (mL) seawater was transferred to a acid-washed 15 mL polypropylene Falcon tube (VWR; Catalog #89049-172), then 50 microliters (µL) of an isotope spike (containing ⁵⁷Fe, ⁶²Ni, ⁶⁵Cu, ⁶⁷Zn, ²⁰⁷Pb, and ¹¹⁰Cd) was added to the 15 mL tube and thoroughly mixed with the sample. The samples would then sit overnight before they were preconcentrated by a SC-DX seaFAST system (Elemental Scientific; M-SFS2-MG-52). The seaFAST system helped to preconcentrate the seawater samples and remove the salt matrix. About 10 mL of seawater was injected through the Nobias PA-1 column of seaFAST and 0.5 mL eluent (1M HNO₃ containing 1 ppb In) was used to elute trace metals for concentration measurement. The trace metal concentrations were then measured by a Thermo Element 2ᵀᴹ Inductively Coupled Plasma - Mass Spectrometer. Concentrations of copper (Cu) and nickel (Ni) were derived by using an isotope dilution method.
Data Processing:
Excel 2016 with home-made data reduction algorithms.
Quality Flags:
Quality flags were assigned following the GEOTRACES Quality Flag Policy (https://www.geotraces.org/geotraces-quality-flag-policy/), which recommends the SeaDataNet Scheme. Flags are defined as:
0 = no quality control;
1 = good value;
2 = probably good value;
3 = probably bad value;
4 = bad value;
5 = changed value;
6 = value below detection (BDL);
7 = value in excess;
8 = interpolated value;
9 = missing value;
A = value phenomenon uncertain.
BCO-DMO Processing:
- renamed fields to comply with BCO-DMO naming conventions;
- moved rows for station 18.6 to the leg 2 (RR1815) dataset;
- created the ISO8601 date-time fields;
- replaced "N/A" and "-999" with "nd" (no data).
File |
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Ni_Cu_Leg1.csv (Comma Separated Values (.csv), 56.15 KB) MD5:7332f6fcbae52a573c84e445ff3379b1 Primary data file for dataset ID 885319 |
Parameter | Description | Units |
Cruise_ID | Cruise ID number | unitless |
Station_ID | Station ID number | unitless |
Start_Date_UTC | Date (UTC) at start of sample collection | unitless |
Start_Time_UTC | Time (UTC) at start of sample collection | unitless |
Start_ISO_DateTime_UTC | Date and time (UTC) at start of sample collection in ISO8601 format | unitless |
End_Date_UTC | Date (UTC) at end of sample collection | unitless |
End_Time_UTC | Time (UTC) at end of sample collection | unitless |
End_ISO_DateTime_UTC | Date and time (UTC) at end of sample collection in ISO8601 format | unitless |
Start_Latitude | Latitude at start of sample collection | degrees North |
Start_Longitude | Longitude at start of sample collection | degrees East |
End_Latitude | Latitude at end of sample collection | degrees North |
End_Longitude | Longitude at end of sample collection | degrees East |
Cast_number | Cast number | unitless |
Event_ID | Event number | unitless |
Sample_ID | GEOTRACES sample ID number | unitless |
Sample_Depth | Sample depth | meters (m) |
Ni_D_CONC_BOTTLE_yls3r7 | Total dissolved Ni (<0.2 um) by Niskin or similar water sampling bottle | nanomoles per kilogram (nmol/kg) |
SD1_Ni_D_CONC_BOTTLE_yls3r7 | One standard deviation of Ni_D_CONC_BOTTLE_yls3r7 | nanomoles per kilogram (nmol/kg) |
Flag_Ni_D_CONC_BOTTLE_yls3r7 | Quality flag for Ni_D_CONC_BOTTLE_yls3r7 | unitless |
Cu_D_CONC_BOTTLE_assjff | Total dissolved Cu (<0.2 um) by Niskin or similar water sampling bottle | nanomoles per kilogram (nmol/kg) |
SD1_Cu_D_CONC_BOTTLE_assjff | One standard deviation of Cu_D_CONC_BOTTLE_assjff | nanomoles per kilogram (nmol/kg) |
Flag_Cu_D_CONC_BOTTLE_assjff | Quality flag for Cu_D_CONC_BOTTLE_assjff | unitless |
Ni_D_CONC_FISH_lw70p6 | Total dissolved Ni (<0.2 um) by trace-metal clean towed surface sampler | nanomoles per kilogram (nmol/kg) |
SD1_Ni_D_CONC_FISH_lw70p6 | One standard deviation of Ni_D_CONC_FISH_lw70p6 | nanomoles per kilogram (nmol/kg) |
Flag_Ni_D_CONC_FISH_lw70p6 | Quality flag for Ni_D_CONC_FISH_lw70p6 | unitless |
Cu_D_CONC_FISH_dyigib | Total dissolved Cu (<0.2 um) by trace-metal clean towed surface sampler | nanomoles per kilogram (nmol/kg) |
SD1_Cu_D_CONC_FISH_dyigib | One standard deviation of Cu_D_CONC_FISH_dyigib | nanomoles per kilogram (nmol/kg) |
Flag_Cu_D_CONC_FISH_dyigib | Quality flag for Cu_D_CONC_FISH_dyigib | unitless |
Dataset-specific Instrument Name | GEOTRACES CTD/rosette (Model 32G, Sea-Bird Electronics) |
Generic Instrument Name | CTD Sea-Bird |
Generic Instrument Description | Conductivity, Temperature, Depth (CTD) sensor package from SeaBird Electronics, no specific unit identified. This instrument designation is used when specific make and model are not known. See also other SeaBird instruments listed under CTD. More information from Sea-Bird Electronics. |
Dataset-specific Instrument Name | Teflon-coated 12 L GO-FLO bottles (Model 10812 T, General Oceanics) |
Generic Instrument Name | GO-FLO Teflon Trace Metal Bottle |
Generic Instrument Description | GO-FLO Teflon-lined Trace Metal free sampling bottles are used for collecting water samples for trace metal, nutrient and pigment analysis. The GO-FLO sampling bottle is designed specifically to avoid sample contamination at the surface, internal spring contamination, loss of sample on deck (internal seals), and exchange of water from different depths. |
Dataset-specific Instrument Name | Thermo Element 2 Inductively Coupled Plasma - Mass Spectrometer (ICP-MS) |
Generic Instrument Name | Inductively Coupled Plasma Mass Spectrometer |
Dataset-specific Description | The concentrations were determined using an high-resolution ICP-MS (Thermo Element 2TM) with a PC3 desolvation system (Elemental Scientific). |
Generic Instrument Description | An ICP Mass Spec is an instrument that passes nebulized samples into an inductively-coupled gas plasma (8-10000 K) where they are atomized and ionized. Ions of specific mass-to-charge ratios are quantified in a quadrupole mass spectrometer. |
Dataset-specific Instrument Name | SC-DX seaFAST system (Elemental Scientific; M-SFS2-MG-52) |
Generic Instrument Name | SeaFAST Automated Preconcentration System |
Generic Instrument Description | The seaFAST is an automated sample introduction system for analysis of seawater and other high matrix samples for analyses by ICPMS (Inductively Coupled Plasma Mass Spectrometry). |
Website | |
Platform | R/V Roger Revelle |
Report | |
Start Date | 2018-09-18 |
End Date | 2018-10-21 |
Description | Additional cruise information is available from the Rolling Deck to Repository (R2R): https://www.rvdata.us/search/cruise/RR1814 |
A 60-day research cruise took place in 2018 along a transect form Alaska to Tahiti at 152° W. A description of the project titled "Collaborative Research: Management and implementation of the US GEOTRACES Pacific Meridional Transect", funded by NSF, is below. Further project information is available on the US GEOTRACES website and on the cruise blog. A detailed cruise report is also available as a PDF.
Description from NSF award abstract:
GEOTRACES is a global effort in the field of Chemical Oceanography in which the United States plays a major role. The goal of the GEOTRACES program is to understand the distributions of many elements and their isotopes in the ocean. Until quite recently, these elements could not be measured at a global scale. Understanding the distributions of these elements and isotopes will increase the understanding of processes that shape their distributions and also the processes that depend on these elements. For example, many "trace elements" (elements that are present in very low amounts) are also important for life, and their presence or absence can play a vital role in the population of marine ecosystems. This project will launch the next major U.S. GEOTRACES expedition in the Pacific Ocean between Alaska and Tahiti. The award made here would support all of the major infrastructure for this expedition, including the research vessel, the sampling equipment, and some of the core oceanographic measurements. This project will also support the personnel needed to lead the expedition and collect the samples.
This project would support the essential sampling operations and infrastructure for the U.S. GEOTRACES Pacific Meridional Transect along 152° W to support a large variety of individual science projects on trace element and isotope (TEI) biogeochemistry that will follow. Thus, the major objectives of this management proposal are: (1) plan and coordinate a 60 day research cruise in 2018; (2) obtain representative samples for a wide variety of TEIs using a conventional CTD/rosette, GEOTRACES Trace Element Sampling Systems, and in situ pumps; (3) acquire conventional CTD hydrographic data along with discrete samples for salinity, dissolved oxygen, algal pigments, and dissolved nutrients at micro- and nanomolar levels; (4) ensure that proper QA/QC protocols are followed and reported, as well as fulfilling all GEOTRACES intercalibration protocols; (5) prepare and deliver all hydrographic data to the GEOTRACES Data Assembly Centre (via the US BCO-DMO data center); and (6) coordinate all cruise communications between investigators, including preparation of a hydrographic report/publication. This project would also provide baseline measurements of TEIs in the Clarion-Clipperton fracture zone (~7.5°N-17°N, ~155°W-115°W) where large-scale deep sea mining is planned. Environmental impact assessments are underway in partnership with the mining industry, but the effect of mining activities on TEIs in the water column is one that could be uniquely assessed by the GEOTRACES community. In support of efforts to communicate the science to a wide audience the investigators will recruit an early career freelance science journalist with interests in marine science and oceanography to participate on the cruise and do public outreach, photography and/or videography, and social media from the ship, as well as to submit articles about the research to national media. The project would also support several graduate students.
NSF Award Abstract:
The goal of the international GEOTRACES program is to understand the distributions of many chemical elements and their isotopes in the oceans. The National Science Foundation is supporting a U.S. GEOTRACES sampling expedition in the Pacific Ocean 2018, from Alaska to Tahiti. This award will focus on measurement of the stable isotopes of iron (Fe), nickel (Ni), zinc (Zn), copper (Cu), and cadmium (Cd) in seawater, filtered particles, and atmospheric aerosol particles on this expedition. The trace metals Fe, Ni, Zn, Cu, and Cd strongly influence marine biogeochemistry and carbon cycling. Measurements of isotope ratios -- the relative abundance of different forms of the same chemical element -- provide insights not possible from concentration measurements alone. The investigators will use isotope data to learn more about the inputs and outputs of these elements to the ocean as well as the biological processes that influence their distributions within the oceans, leading to greater understanding of the role these metals play in oceanic carbon cycling. The award will also host an international inter-lab comparison exercise for Cd isotope ratios at low concentrations in seawater. The project will support an early career investigator, a postdoctoral researcher, and undergraduate and graduate students.
The investigators will measure delta-56Fe, delta-60Ni, delta-65Cu, delta-66Zn, and delta-114Cd at high spatial resolution along the U.S. GEOTRACES Pacific Meridional Transect (PMT). The resulting oceanic sections of all five isotope systems will enable them to distinguish between competing ideas about the controls on trace metal distributions. A wide variety of hypotheses about marine biogeochemical trace metal cycling, addressing topics of global importance will be explored and tested, including: 1) How do different sources, productivity and export regimes, coupled with overturning circulation, control the distribution of Fe, Ni, Zn, Cu and Cd and their isotopes in the Pacific? 2) Do oxygen minimum zones act as sinks for Cd, Zn, Cu and Ni, while acting as sources for Fe? and 3) What sources are most important for supplying Fe to the North Pacific Ocean? The PMT section crosses two high nutrient-low chlorophyll (HNLC) regions and two oligotrophic gyres, as well as transecting the oldest waters in the ocean, allowing the investigators to use high-resolution isotope datasets to investigate competing hypotheses about the effect of vertical, horizontal and in situ biogeochemical processes on the distribution of all five metals and their isotopes. Aerosol dust, volcanogenic and reducing margin sediments, and hydrothermal vents such as the East Pacific Rise have all been hypothesized as major contributors to the dissolved Fe cycle in the Pacific. Measurement of iron isotope signatures in aerosols and near to oceanic sources will enable the identification and quantification the importance of these different iron sources and processes in supplying iron to the iron-limited surface ocean, especially important for the two HNLC regions along the PMT section.
GEOTRACES is a SCOR sponsored program; and funding for program infrastructure development is provided by the U.S. National Science Foundation.
GEOTRACES gained momentum following a special symposium, S02: Biogeochemical cycling of trace elements and isotopes in the ocean and applications to constrain contemporary marine processes (GEOSECS II), at a 2003 Goldschmidt meeting convened in Japan. The GEOSECS II acronym referred to the Geochemical Ocean Section Studies To determine full water column distributions of selected trace elements and isotopes, including their concentration, chemical speciation, and physical form, along a sufficient number of sections in each ocean basin to establish the principal relationships between these distributions and with more traditional hydrographic parameters;
* To evaluate the sources, sinks, and internal cycling of these species and thereby characterize more completely the physical, chemical and biological processes regulating their distributions, and the sensitivity of these processes to global change; and
* To understand the processes that control the concentrations of geochemical species used for proxies of the past environment, both in the water column and in the substrates that reflect the water column.
GEOTRACES will be global in scope, consisting of ocean sections complemented by regional process studies. Sections and process studies will combine fieldwork, laboratory experiments and modelling. Beyond realizing the scientific objectives identified above, a natural outcome of this work will be to build a community of marine scientists who understand the processes regulating trace element cycles sufficiently well to exploit this knowledge reliably in future interdisciplinary studies.
Expand "Projects" below for information about and data resulting from individual US GEOTRACES research projects.
Funding Source | Award |
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NSF Division of Ocean Sciences (NSF OCE) |