Dataset: Symbiont psbA and ORF host sequences generated as part of a study of pCO2 variability on the reef-building coral Pocillopora damicornis conducted at Heron Island Research Station, Heron Island, southern Great Barrier Reef in 2021

ValidatedFinal no updates expectedDOI: 10.26008/1912/bco-dmo.885679.1Version 1 (2022-12-20)Dataset Type:Other Field Results

Principal Investigator: Katie Barott (University of Pennsylvania)

Co-Principal Investigator: Kristen Brown (University of Pennsylvania)

BCO-DMO Data Manager: Amber D. York (Woods Hole Oceanographic Institution)

Project: Influence of environmental pH variability and thermal sensitivity on the resilience of reef-building corals to acidification stress (Coral Resilience)

Abstract

This dataset contains symbiont psbA and ORF host sequences and accession information at the National Center for Biotechnology Information (NCBI)'s Genbank database. These data were collected as part of a study of pCO2 variability on the reef-building coral Pocillopora damicornis conducted at Heron Island Research Station, Heron Island, southern Great Barrier Reef in 2021 (Brown et al., 2022). Abstract for all data from the study (Brown et al., 2022) including this dataset: Ocean acidifica...

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Cite Dataset

The truncates sequences were submitted to GenBank under the following accession numbers (accessible from the below "popsets"):

"Cladocopium latusorum photosystem II D1/D2 subunit (psbA) gene, partial cds; chloroplast."
* popset: https://www.ncbi.nlm.nih.gov/popset/2310683771
* accessions OP279755 – OP279774 

"Pocillopora damicornis ATP synthase subunit 6 (ATP6) gene, complete cds; and control region, complete sequence; mitochondrial."
* popset: https://www.ncbi.nlm.nih.gov/popset/2310683883
* accessions OP296521 - OP296503

This dataset contains two fasta files aggregating sequences from the above popsets at NCBI.

Related Datasets

IsRelatedTo
Dataset: https://www.ncbi.nlm.nih.gov/popset/2310683771
Brown, K. T., Mello-Athayde, M. A., Sampayo, E. M., Chai, A., Dove, S., & Barott, K. L. (2022). Cladocopium latusorum photosystem II D1/D2 subunit (psbA) gene, partial cds; chloroplast. The National Center for Biotechnology Information PopSet: 2310683771. Available from https://www.ncbi.nlm.nih.gov/popset/2310683771
IsRelatedTo
Dataset:
Brown, K. T., Mello-Athayde, M. A., Sampayo, E. M., Chai, A., Dove, S., & Barott, K. L. (2022). Pocillopora damicornis ATP synthase subunit 6 (ATP6) gene, complete cds; and control region, complete sequence; mitochondrial. The National Center for Biotechnology Information PopSet: 2310683883. Available from https://www.ncbi.nlm.nih.gov/popset/2310683883

Related Publications

Results
Brown, K. T., Mello-Athayde, M. A., Sampayo, E. M., Chai, A., Dove, S., & Barott, K. L. (2022). Environmental memory gained from exposure to extreme pCO2 variability promotes coral cellular acid–base homeostasis. Proceedings of the Royal Society B: Biological Sciences, 289(1982). https://doi.org/10.1098/rspb.2022.0941
Methods
Flot, J.-F., & Tillier, S. (2007). The mitochondrial genome of Pocillopora (Cnidaria: Scleractinia) contains two variable regions: The putative D-loop and a novel ORF of unknown function. Gene, 401(1-2), 80–87. doi:10.1016/j.gene.2007.07.006
Methods
LaJeunesse, T. C., & Thornhill, D. J. (2011). Improved Resolution of Reef-Coral Endosymbiont (Symbiodinium) Species Diversity, Ecology, and Evolution through psbA Non-Coding Region Genotyping. PLoS ONE, 6(12), e29013. https://doi.org/10.1371/journal.pone.0029013
Methods
LaJeunesse, T. C., Loh, W. K. W., van Woesik, R., Hoegh-Guldberg, O., Schmidt, G. W., & Fitt, W. K. (2003). Low symbiont diversity in southern Great Barrier Reef corals, relative to those of the Caribbean. Limnology and Oceanography, 48(5), 2046–2054. Portico. https://doi.org/10.4319/lo.2003.48.5.2046
Methods
Moore, R. B. (2003). Highly organized structure in the non-coding region of the psbA minicircle from clade C Symbiodinium. INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, 53(6), 1725–1734. https://doi.org/10.1099/ijs.0.02594-0

Barott, K., Brown, K. T. (2023) Symbiont psbA and ORF host sequences generated as part of a study of pCO2 variability on the reef-building coral Pocillopora damicornis conducted at Heron Island Research Station, Heron Island, southern Great Barrier Reef in 2021. Biological and Chemical Oceanography Data Management Office (BCO-DMO). (Version 1) Version Date 2022-12-20 [if applicable, indicate subset used]. doi:10.26008/1912/bco-dmo.885679.1 [access date]

Terms of Use

This dataset is licensed under Creative Commons Attribution 4.0.


If you wish to use this dataset, it is highly recommended that you contact the original principal investigators (PI). Should the relevant PI be unavailable, please contact BCO-DMO (info@bco-dmo.org) for additional guidance. For general guidance please see the BCO-DMO Terms of Use document.

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Funded by the U.S. National Science Foundation