Dataset: Pool-seq data from wild populations of copepods in the North Sea from May 2014 (Evolutionary genomics of a copepod project)

This dataset has not been validatedPreliminary and in progressVersion 1 (2023-06-27)Dataset Type:Other Field Results

Principal Investigator, Contact: Carol E. Lee (University of Wisconsin)

Scientist, Contact: Juanita A. Diaz (University of Wisconsin)

Scientist: David B. Stern (University of Wisconsin)

BCO-DMO Data Manager: Sawyer Newman (Woods Hole Oceanographic Institution)

Project: Evolutionary Responses to Global Changes in Salinity and Temperature (Evolutionary genomics of a copepod)

Abstract

This dataset was generated from studies of wild populations of Eurytemora affinis (E. affinis). Copepod populations were collected from three locations in the North Sea using bongo nets with 100 micrometer (μm) mesh and stored in RNAlater. Sampling locations included two freshwater lakes and one brackish estuary. Individual copepods (100 individuals, 50:50 male:female) were pooled and their DNA was extracted. Paired-end whole-genome sequencing libraries were prepared using the Illumina Nextera D...

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Cite Dataset

These data have been deposited in NCBI under BioProject number PRJNA923656.

Related Datasets

IsRelatedTo
Dataset: Evolve and re-sequence experiment - laboratory selection lines
Lee, C. E., Stern, D. B. (2022) Pool-seq data from laboratory selection lines of copepods collected from Kiel Canal in Germany in 2017 and 2018. Biological and Chemical Oceanography Data Management Office (BCO-DMO). (Version 1) Version Date 2022-08-29 doi:10.26008/1912/bco-dmo.878335.1

Related Publications

Results
Diaz, J., Stern, D., & Lee, C. E. (2023). Local adaptation despite gene flow in copepod populations across salinity and temperature gradients in the Baltic and North Seas. https://doi.org/10.22541/au.168311545.58858033/v1
Software
Diaz, Juanita & Stern, D. B. (2022). TheDBStern/Baltic_Lab_Wild: First release (Version v0.0.1)[Computer software]. Zenodo. https://doi.org/10.5281/ZENODO.6615047
Software
Diaz, Juanita (2023). juanitadiaz/Europe_Wild_LocalAdaptation_GeneFlow: v0.0.1 (Version v0.0.1) [Computer software]. Zenodo. https://doi.org/10.5281/ZENODO.7819560

Lee, C. E., Diaz, J. A., Stern, D. B. (2023) Pool-seq data from wild populations of copepods in the North Sea from May 2014 (Evolutionary genomics of a copepod project). Biological and Chemical Oceanography Data Management Office (BCO-DMO). (Version 1) Version Date 2023-06-27 [if applicable, indicate subset used]. http://lod.bco-dmo.org/id/dataset/897977 [access date]

Terms of Use

This dataset is licensed under Creative Commons Attribution 4.0.


If you wish to use this dataset, it is highly recommended that you contact the original principal investigators (PI). Should the relevant PI be unavailable, please contact BCO-DMO (info@bco-dmo.org) for additional guidance. For general guidance please see the BCO-DMO Terms of Use document.

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Funded by the U.S. National Science Foundation