Contributors | Affiliation | Role |
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Micheli, Fiorenza | Stanford University | Principal Investigator |
Woodson, Clifton Brock | University of Georgia (UGA) | Co-Principal Investigator |
Hernández-Velasco, Arturo | Comunidad y Biodiversidad, A.C. (COBI) | Scientist |
Jacobson, Carolina Olguín | Stanford University | Scientist |
Torre, Jorge | Comunidad y Biodiversidad, A.C. (COBI) | Scientist |
Romero, Alfonso | Comunidad y Biodiversidad, A.C. (COBI) | Technician |
York, Amber D. | Woods Hole Oceanographic Institution (WHOI BCO-DMO) | BCO-DMO Data Manager |
All the data collected during the ecological monitoring was then transferred to excel files, where it was double checked for typos and errors. Every year since 2006, the data has been collected in one excel file.
* File "COBI_Mexico_FishParameters_IslaNatividad_2006-2021_EnglishVersion.csv" imported into the BCO-DMO data system with missing data identifiers "NA" and "ND."
** Missing data values are displayed differently based on the file format you download. They are blank in csv files, "NaN" in MatLab files, etc.
* Column names adjusted to conform to BCO-DMO naming conventions designed to support broad re-use by a variety of research tools and scripting languages. [Only numbers, letters, and underscores. Can not start with a number
* Taxonomic names in this dataset were matched to known identifiers using the World Register of Marine Species (WoRMS) taxa match tool on 2023-08-31. A supplemental species list was added to this dataset containing the name used in the dataset, taxon name match information, and the associated LifeSciences Identifier (LSID) for the currently accepted name as of 2023-08-28.
* ISO_DateTime_UTC_Start column added in ISO 8601 format for UTC time zone using the supplied year, month, day, START_TIME (using "Mexico/BajaSur" UTC-7:00/-6:00). Time zone confirmed by submitter.
* Resolved mixed time formats in the time column. Integer hours in the time column were appended with 00 minutes (for example "8" became "8:00"). Subimtter explained that integer entry of hours was on the hour at 00 minutes.
File |
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Ecological monitoring of fish on Isla Natividad from 2006 to 2021 filename: 907363_v1_isla_natividad_fish.csv (Comma Separated Values (.csv), 7.82 MB) MD5:acfca5c54473680d0c6cd1cad9eecbf5 Primary data file for dataset ID 907363, version 1 |
File |
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Fish species list filename: species_list_fish.csv (Comma Separated Values (.csv), 3.22 KB) MD5:913382f35be5b5c5b77cbc645fb81405 Species list for identifications in the algae transect data. Includes columns:ScientificName, Taxonomic name used in the datasetAphiaID, The World Register of Marine Species (WoRMS) taxonomic identifier for the name in the datasetTaxon_status_20230831, Status of the name in the dataset as of 2023-08-31. Indicates if the name is the currently accepted name or an unaccepted synonymScientificName_accepted, The accepted name (differs from ScientificName column if unaccepted synonym used there)LSID_accepted_name, The Life Sciences Identifier (LSID) for the accepted name |
Parameter | Description | Units |
ID | identification number | unitless |
DAY | day when monitoring was conducted | unitless |
MONTH | month when monitoring was conducted | unitless |
YEAR | year when monitoring was conducted | unitless |
STATE | State in Mexico: Baja California Sur | unitless |
COMMUNITY | The community were the monitoring was done | unitless |
SITE | The specific sites were monitoring was done | unitless |
LAT | latitute | decimal degrees |
LONG | longitude | decimal degrees |
HABITAT | type of ecosystem where monitoring was conducted | unitless |
ZONE | If it was a marine reserve or not: Control (not reserve), Reserve (marine reserve) | unitless |
PROTECTION | If the site had any type of protection: none, community reserve, fishing refuge zone | unitless |
MPA | If there is any type of marine protected area on a national level | unitless |
DIVER | The person that did the monitoring | unitless |
START_TIME | initial time of monitoring (HH:MM or HH) in Pacific Time Zone (UTC-8/-7) | unitless |
FINAL_TIME | final time of monitoring (HH:MM or HH) in Pacific Time Zone (UTC-8/-7) | unitless |
ISO_DateTime_UTC_Start | initial timestamp of monitoring in UTC time zone (ISO 8601 format) | unitless |
START_DEPTH | initial depth | meters (m) |
FINAL_DEPTH | final depth | meters (m) |
TEMPERATURE | water temperature | degrees Celcius |
VISIBILITY | visibility description | meters (m) |
CURRENT | current descritpion | unitless |
TRANSECT | the number of transect of the monitoring | meters (m) |
GENUS | the genus of the species found along the transect on the monitoring | unitless |
SPECIES | the species found along the transect on the monitoring | unitless |
SEX | sex of the fish counted along the transect (female, male, adult, juvenile) | unitless |
SIZE | size of the fish counted along the transect | centimeters (cm) |
ABUNDANCE | quantity of species counted along the transect on the monitoring | per individual |
NSF Award Abstract:
Oceanographic variability is increasingly recognized as a driver of change in marine ecosystems. Understanding the effects of this oceanographic variability and its extremes on organisms, populations, ecosystems and the critical services they deliver is of great scientific interest and pivotal for resource management and policy. The overarching goal of this project is to determine how small-scale heterogeneity in habitat quality and site-specific vulnerability to extreme oceanographic conditions might help identify safe spaces and protect coastal populations and fisheries from the detrimental effects of increasing frequency, intensity and durations of extreme oceanographic conditions. This project will combine detailed nearshore oceanographic studies with ecological experiments and coupled biophysical modeling to advance understanding of the drivers of local oceanographic variability and consequent effects on coastal marine animals. The research will determine how multiple, potentially stressful, environmental drivers co-vary in the field and how such variation affects the population dynamics of coastal species. Specifically, this project will provide key insights regarding how changes in ocean acidification, dissolved oxygen and temperature will affect green and pink abalone, an ecologically and economically important resource in the southern California Current. Team members will work with partner non-governmental organizations, resource agencies, and fishing cooperative federations to disseminate results and incorporate data and insights into fisheries management and adaptation initiatives in Baja California, Mexico and in California, USA. This project will also support the training and professional development of underrepresented groups at the high school, undergraduate, graduate and postdoctoral levels through direct involvement in research, intensive courses and international workshops.
Despite large-scale drivers and regional perturbations, local variability in ocean conditions may be a major driver of the overall performance and vulnerability of coastal marine species. Research performed as part of this project will test two specific hypotheses: (1) The relative influences of upwelling versus tides, as mediated by coastal geometry and structural complexity associated with rocky reefs and kelp forests act to create high local variability in physical conditions, at scales of 10s-1000s meters; and (2) Local variability in oceanographic conditions results in high local patchiness in the performance of sedentary marine organisms, providing for safe spaces in the face of escalating heat waves, hypoxia, and acidification, that have caused recent mass mortalities in multiple species across the California Current region. Integrated oceanographic-ecological field studies will be conducted along the coast of Baja California, Mexico, using green and pink abalone (Haliotis fulgens, H. corrugata) as model species. Complementary laboratory experiments will evaluate how different exposure regimes (frequency, intensity and duration of high temperature, and/or low dissolved oxygen and acidity events) may affect the demography and persistence of abalone populations under current and future environments. Coupled biophysical and population models will integrate results from the field and laboratory experiments to understand how local variability in ocean conditions affects population dynamics over longer periods. The research will advance the understanding of factors affecting the resilience coastal species by (1) ascertaining how large-scale oceanographic phenomena manifest in ocean conditions (dissolved oxygen, acidity, temperature) at local scales that are most relevant to coastal marine ecosystems and (2) determining the effects of current, and expected future, ocean conditions and variability on important marine species.
Funding Source | Award |
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NSF Division of Ocean Sciences (NSF OCE) |