Ecological monitoring of fish on Isla Natividad from 2006 to 2021

Website: https://www.bco-dmo.org/dataset/907363
Data Type: Other Field Results
Version: 1
Version Date: 2023-08-30

Project
» Collaborative Research: Evaluating how abalone populations in the California Current are structured by the interplay of large-scale oceanographic forcing and nearshore variability (Abalone Safe Places)
ContributorsAffiliationRole
Micheli, FiorenzaStanford UniversityPrincipal Investigator
Woodson, Clifton BrockUniversity of Georgia (UGA)Co-Principal Investigator
Hernández-Velasco, ArturoComunidad y Biodiversidad, A.C. (COBI)Scientist
Jacobson, Carolina OlguínStanford UniversityScientist
Torre, JorgeComunidad y Biodiversidad, A.C. (COBI)Scientist
Romero, AlfonsoComunidad y Biodiversidad, A.C. (COBI)Technician
York, Amber D.Woods Hole Oceanographic Institution (WHOI BCO-DMO)BCO-DMO Data Manager

Abstract
This dataset encompasses information about fish transects between 2006 to 2021 in Isla Natividad. Abundances, sex and size of fish can be found in the data set. Also, the dates when the transects were done, the site, the name of the diver, the depth the transect was laid, if the site was a marine reserve or not, if the site is inside a marine protected area or not, the latitude and longitude of the sites, the temperature of the water, the number of transect from where the information was counted, and the species name of the fish counted. Ecological monitoring is important to collect data of species that inhabit an specific ecosystem. For this data set, we present all the data form 2006 to 2021 on algae, marine invertebrates, fish and uniform point contact at six different sites in Isla Natividad off the coast of Baja California Sur, Mexico. Data was collected once a year by trained divers as a collaborative effort from Stanford University, non-governmental organizations, and fishing cooperative federations. These data provides the abundaces of algae, invertebrates, fish and substrate of Isla Natividad over the spam of 15 years and may be use to assess changes in the ecosystems after shocks such as hypoxic events or marine heatwaves.


Coverage

Spatial Extent: N:27.8952 E:-115.049 S:27.505 W:-115.521
Temporal Extent: 2006-08-14 - 2021-09-24

Methods & Sampling

Ecological monitoring was conducted once a year from 2006-2021 at six different sites in Isla Natividad, Baja California Sur, Mexico. Using SCUBA, trained divers laid 30 x 2 meters belt transects to collect in situ algae, marine invertebrates, fish and uniform point contact  (UPC) found along the transect. For algae, divers counted each algae and counted the number of stipes in the organism. 
 
For data access and methodology details for marine invertebrates, fish, and uniform point contact (UPC) data, see the "Related Datasets" section.  These four datasets related to each other in the way that the information from algae, invertebrates, fish and UPC was taken from the same site, on the same date, done by the same person.
 
These four related datasets were collected following the same methodology. Each year from 2006 to 2021, certified divers will lay several 30m transects along kelp forest in different sites in Isla Natividad, Baja California Sur, Mexico. Along the transects, the divers will collect information of algae, invertebrates, fish and UPC (Uniform Point Contact). Each transect was done in one single dive, collecting all the information already mentioned. At the end of the collecting season, the data was checked and transferred to the main dataset. 
 
Instruments:
SCUBA equipment 
30m transects
Diving slates 

Data Processing Description

All the data collected during the ecological monitoring was then transferred to excel files, where it was double checked for typos and errors. Every year since 2006, the data has been collected in one excel file.


BCO-DMO Processing Description

* File "COBI_Mexico_FishParameters_IslaNatividad_2006-2021_EnglishVersion.csv" imported into the BCO-DMO data system with missing data identifiers "NA" and "ND."
** Missing data values are displayed differently based on the file format you download. They are blank in csv files, "NaN" in MatLab files, etc.
* Column names adjusted to conform to BCO-DMO naming conventions designed to support broad re-use by a variety of research tools and scripting languages. [Only numbers, letters, and underscores. Can not start with a number
* Taxonomic names in this dataset were matched to known identifiers using the World Register of Marine Species (WoRMS) taxa match tool on 2023-08-31. A supplemental species list was added to this dataset containing the name used in the dataset, taxon name match information, and the associated LifeSciences Identifier (LSID) for the currently accepted name as of 2023-08-28.
* ISO_DateTime_UTC_Start column added in ISO 8601 format for UTC time zone using the supplied year, month, day, START_TIME (using "Mexico/BajaSur" UTC-7:00/-6:00). Time zone confirmed by submitter.
* Resolved mixed time formats in the time column. Integer hours in the time column were appended with 00 minutes (for example "8" became "8:00"). Subimtter explained that integer entry of hours was on the hour at 00 minutes.


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Data Files

File
Ecological monitoring of fish on Isla Natividad from 2006 to 2021
filename: 907363_v1_isla_natividad_fish.csv
(Comma Separated Values (.csv), 7.82 MB)
MD5:acfca5c54473680d0c6cd1cad9eecbf5
Primary data file for dataset ID 907363, version 1

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Supplemental Files

File
Fish species list
filename: species_list_fish.csv
(Comma Separated Values (.csv), 3.22 KB)
MD5:913382f35be5b5c5b77cbc645fb81405
Species list for identifications in the algae transect data. Includes columns:
ScientificName, Taxonomic name used in the dataset
AphiaID, The World Register of Marine Species (WoRMS) taxonomic identifier for the name in the dataset
Taxon_status_20230831, Status of the name in the dataset as of 2023-08-31. Indicates if the name is the currently accepted name or an unaccepted synonym
ScientificName_accepted, The accepted name (differs from ScientificName column if unaccepted synonym used there)
LSID_accepted_name, The Life Sciences Identifier (LSID) for the accepted name

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Related Datasets

IsRelatedTo
Micheli, F., Woodson, C. B., Hernández-Velasco, A., Jacobson, C. O., Torre, J. (2023) Ecological monitoring of algae on Isla Natividad from 2006 to 2021. Biological and Chemical Oceanography Data Management Office (BCO-DMO). (Version 1) Version Date 2023-08-29 doi:10.26008/1912/bco-dmo.907321.1 [view at BCO-DMO]
Relationship Description: Datasets collected as part of the same ecological monitoring study performed Isla Natividad off the coast of Baja California Sur, Mexico between 2006-2021.
Micheli, F., Woodson, C. B., Hernández-Velasco, A., Jacobson, C. O., Torre, J. (2023) Ecological monitoring of marine invertebrates on Isla Natividad from 2006 to 2021. Biological and Chemical Oceanography Data Management Office (BCO-DMO). (Version 1) Version Date 2023-08-30 doi:10.26008/1912/bco-dmo.907353.1 [view at BCO-DMO]
Relationship Description: Datasets collected as part of the same ecological monitoring study performed Isla Natividad off the coast of Baja California Sur, Mexico between 2006-2021.
Micheli, F., Woodson, C. B., Hernández-Velasco, A., Jacobson, C. O., Torre, J. (2023) Uniform point contact (UPC) transect data from Isla Natividad from 2006 to 2021. Biological and Chemical Oceanography Data Management Office (BCO-DMO). (Version 1) Version Date 2023-08-30 doi:10.26008/1912/bco-dmo.907373.1 [view at BCO-DMO]
Relationship Description: Datasets collected as part of the same ecological monitoring study performed Isla Natividad off the coast of Baja California Sur, Mexico between 2006-2021.

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Parameters

ParameterDescriptionUnits
ID

identification number

unitless
DAY

day when monitoring was conducted

unitless
MONTH

month when monitoring was conducted

unitless
YEAR

year when monitoring was conducted

unitless
STATE

State in Mexico: Baja California Sur

unitless
COMMUNITY

The community were the monitoring was done

unitless
SITE

The specific sites were monitoring was done

unitless
LAT

latitute

decimal degrees
LONG

longitude

decimal degrees
HABITAT

type of ecosystem where monitoring was conducted

unitless
ZONE

If it was a marine reserve or not: Control (not reserve), Reserve (marine reserve)

unitless
PROTECTION

If the site had any type of protection: none, community reserve, fishing refuge zone

unitless
MPA

If there is any type of marine protected area on a national level

unitless
DIVER

The person that did the monitoring

unitless
START_TIME

initial time of monitoring (HH:MM or HH) in Pacific Time Zone (UTC-8/-7)

unitless
FINAL_TIME

final time of monitoring (HH:MM or HH) in Pacific Time Zone (UTC-8/-7)

unitless
ISO_DateTime_UTC_Start

initial timestamp of monitoring in UTC time zone (ISO 8601 format)

unitless
START_DEPTH

initial depth

meters (m)
FINAL_DEPTH

final depth

meters (m)
TEMPERATURE

water temperature

degrees Celcius
VISIBILITY

visibility description

meters (m)
CURRENT

current descritpion

unitless
TRANSECT

the number of transect of the monitoring

meters (m)
GENUS

the genus of the species found along the transect on the monitoring

unitless
SPECIES

the species found along the transect on the monitoring

unitless
SEX

sex of the fish counted along the transect (female, male, adult, juvenile)

unitless
SIZE

size of the fish counted along the transect

centimeters (cm)
ABUNDANCE

quantity of species counted along the transect on the monitoring

per individual

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Project Information

Collaborative Research: Evaluating how abalone populations in the California Current are structured by the interplay of large-scale oceanographic forcing and nearshore variability (Abalone Safe Places)

Coverage: Pacific Coast of Baja California (26 N to 32 N)


NSF Award Abstract:
Oceanographic variability is increasingly recognized as a driver of change in marine ecosystems. Understanding the effects of this oceanographic variability and its extremes on organisms, populations, ecosystems and the critical services they deliver is of great scientific interest and pivotal for resource management and policy. The overarching goal of this project is to determine how small-scale heterogeneity in habitat quality and site-specific vulnerability to extreme oceanographic conditions might help identify safe spaces and protect coastal populations and fisheries from the detrimental effects of increasing frequency, intensity and durations of extreme oceanographic conditions. This project will combine detailed nearshore oceanographic studies with ecological experiments and coupled biophysical modeling to advance understanding of the drivers of local oceanographic variability and consequent effects on coastal marine animals. The research will determine how multiple, potentially stressful, environmental drivers co-vary in the field and how such variation affects the population dynamics of coastal species. Specifically, this project will provide key insights regarding how changes in ocean acidification, dissolved oxygen and temperature will affect green and pink abalone, an ecologically and economically important resource in the southern California Current. Team members will work with partner non-governmental organizations, resource agencies, and fishing cooperative federations to disseminate results and incorporate data and insights into fisheries management and adaptation initiatives in Baja California, Mexico and in California, USA. This project will also support the training and professional development of underrepresented groups at the high school, undergraduate, graduate and postdoctoral levels through direct involvement in research, intensive courses and international workshops.

Despite large-scale drivers and regional perturbations, local variability in ocean conditions may be a major driver of the overall performance and vulnerability of coastal marine species. Research performed as part of this project will test two specific hypotheses: (1) The relative influences of upwelling versus tides, as mediated by coastal geometry and structural complexity associated with rocky reefs and kelp forests act to create high local variability in physical conditions, at scales of 10s-1000s meters; and (2) Local variability in oceanographic conditions results in high local patchiness in the performance of sedentary marine organisms, providing for safe spaces in the face of escalating heat waves, hypoxia, and acidification, that have caused recent mass mortalities in multiple species across the California Current region. Integrated oceanographic-ecological field studies will be conducted along the coast of Baja California, Mexico, using green and pink abalone (Haliotis fulgens, H. corrugata) as model species. Complementary laboratory experiments will evaluate how different exposure regimes (frequency, intensity and duration of high temperature, and/or low dissolved oxygen and acidity events) may affect the demography and persistence of abalone populations under current and future environments. Coupled biophysical and population models will integrate results from the field and laboratory experiments to understand how local variability in ocean conditions affects population dynamics over longer periods. The research will advance the understanding of factors affecting the resilience coastal species by (1) ascertaining how large-scale oceanographic phenomena manifest in ocean conditions (dissolved oxygen, acidity, temperature) at local scales that are most relevant to coastal marine ecosystems and (2) determining the effects of current, and expected future, ocean conditions and variability on important marine species.



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Funding

Funding SourceAward
NSF Division of Ocean Sciences (NSF OCE)

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