Contributors | Affiliation | Role |
---|---|---|
Sanudo-Wilhelmy, Sergio A. | University of Southern California (USC) | Principal Investigator |
Gómez-Consarnau, Laura | University of Southern California (USC) | Co-Principal Investigator, Contact |
Newman, Sawyer | Woods Hole Oceanographic Institution (WHOI BCO-DMO) | BCO-DMO Data Manager |
All sampling and analytical procedures are reported in [Estrada M, Delgado M, Blasco D, Latasa M, Cabello AM, Benítez-Barrios V, et al. (2016) Phytoplankton across Tropical and Subtropical Regions of the Atlantic, Indian and Pacific Oceans. PLoS ONE 11(3): e0151699. doi:10.1371/journal. pone.0151699] and are detailed below.
Hydrography and sampling details
In general, two vertical profiles of Conductivity-Temperature-Depth (CTD) were carried out at a fixed position every day, a first one down to 4000 m depth at 5:00 and a second one, starting around 10:00 local time, down to 200 m depth. The CTD, a SeaBird 9/11-plus, was equipped with dual conductivity and temperature sensors, calibrated at the SeaBird laboratory before the cruise. Water samples were obtained using a rosette of 24 10-liter Niskin bottles. Profiles of underwater photosynthetically active radiation (PAR) were obtained with a 4π Biospherical QCP2300-HP sensor attached to the CTD. The mixed layer depth (MLD) was defined [Monterey G, Levitus S (1997) Seasonal variability of mixed layer depth for the world ocean. Washington D. C.: U. S. Government Printing Office. 96 p] as the first depth (z) where σθ(z)- σθ(10)> 0.125 kg m-3, where σθ(z) and σθ(10) are, respectively, the potential density anomalies at depths z and 10 m. The Ocean Data View software [Schlitzer R (2013) Ocean Data View. http://odv.awi.de] was used to present the distribution of hydrographical variables.
Water samples for nutrient and total Chl a determination were collected from about 10 depths between surface and 200 m, including those selected for phytoplankton sampling. Water for fractionated Chl a analyses and for phytoplankton examination was taken from the Niskin bottles of the second cast of the rosette, at the depth of the 20% light level and at the depth of the subsurface chlorophyll a (Chl a) maximum (SCM). Additional surface seawater samples (3 m depth) were collected with a 30 L Niskin bottle.
Phytoplankton analysis
Approximately 250 cm3 of water were placed in a glass bottle and fixed with hexamine-buffered formaldehyde solution (4% final formalin concentration). A 100 cm3 composite chamber was filled with sample water and its content was allowed to settle for 48 hours. At least two transects of the chamber bottom were observed with an inverted microscope [Utermöhl H (1958) Zur Vervollkommung der quantitativen Phytoplankton-Methodik. Mitt Int Verein Limnol 9: 1–38.] at 312 X magnification to enumerate the most frequent, generally smaller, phytoplankton forms. Additionally, the whole chamber bottom was examined at 125 X magnification to count the larger, less frequent cells. In both cases, all cells encountered were tallied. Classification was done at the genus or species level when possible, but many taxa could not be identified and were pooled in categories such as “small flagellates” or “small dinoflagellates”.
Chlorophyll a, inorganic nutrient determinations and metal determination
To determine total Chl a concentration [Estrada M (2012) Determinación fluorimétrica de la clorofila a. In: Moreno-Ostos E, editor. Expedición de circunnavegación Malaspina 2010: Cambio global y exploración de la biodiversidad del océano Libro blanco de métodos y técnicas de trabajo oceanográfico. Madrid: CSIC. pp. 399–405], a volume of water ranging between 200 and 500 cm3 was filtered through GF/F glass fiber filters that were subsequently frozen at -20°C and, after a minimum of 6 hours, introduced in acetone 90% and left for 24 hours in a refrigerator, in the dark. The fluorescence of the acetonic extracts was determined with a Turner Designs fluorimeter calibrated with a Chl a standard (Sigma-Aldrich); no phaeopigment correction was applied. Chl a concentration for different size fractions was obtained by sequential filtering of
an additional 500 cm3 water sample through Poretics (polycarbonate) membrane filters of pore sizes 20 μm, 2 μm and 0.2 μm. Total Chl a values are those of the GF/F filters; however, as these filters tended systematically to collect more Chl a than 0.2 μm membrane filters, the proportion of Chl a in a particular size fraction was referred to the total obtained by adding up the Chl a collected in the three consecutive membrane filters. Dissolved inorganic nutrients were analyzed with a Skalar AutoAnalyzer, using the procedures of Grasshoff et al. [Grasshoff K, Kremling K, Erhardt M (1999) Methods of Seawater Analysis. Weinheim: Wiley-VCH. 632 p], as described in [Blasco D, De la Fuente Gamero P, Galindo M (2012) Muestreo y análisis de nutrientes inorgánicos disueltos en agua de mar. In: Moreno-Ostos E, editor. Expedición de circunnavegación Malaspina 2010: Cambio global y exploración de la biodiversidad del océano Libro blanco de métodos y técnicas de trabajo oceanográfico Madrid: CSIC. pp. 103–121]. Metal concentrations were analyzed as described in [Pinedo-González, P., et al. (2015), Surface distribution of dissolved trace metals in the oligotrophic ocean and their influence on phytoplankton biomass and productivity, Global Biogeochem. Cycles, 29, 1763–1781, doi:10.1002/ 2015GB005149] using a Thermo Element 2 HR-ICP-MS.
Units and special characters removed from dataset column headers
Spaces removed from column headers and replaced with underscores ("_")
Rounded latitude and longitude values to 5 precision points after the decimal
Converted date field value format from mm/dd/yy to yyyy-mm-dd
File |
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911258_v1_malaspina_expedition_nutrients_and_phytoplankton.csv (Comma Separated Values (.csv), 73.02 KB) MD5:d1616b1d2094b5ec5c8d63820c77226e Primary data file for dataset ID 911258, version 1 |
Parameter | Description | Units |
Cruise | Cruise associated with sample | unitless |
Station | Station associated with sample | unitless |
Date | Date sample was taken | unitless |
Longitude | Longitude of sample collection | unitless |
Latitude | Latitude of sample collection | unitless |
Depth | Water depth at time of sample collection | meters |
Mo | Molybdenum concentration | nano mol I-1 |
Cd | Cadmium concentration | pico mol I-1 |
V | vanadium concentration | pico mol I-1 |
Fe | Iron concentration | nano mol I-1 |
Co | Cobalt concentration | pico mol I-1 |
Ni | Nickel concentration | nano mol I-1 |
Cu | Copper concentration | nano mol I-1 |
Salinity | Salt concentration | psu |
Temp | Seawater temperature | degrees Celsius |
NO3 | Nitrate concentration | micro mol I-1 |
PO4 | Phosphate concentration | micro mol I-1 |
SiO4 | Silicate concentration | micro mol I-1 |
Chla | Chlorophyll-a concentration | micro gr I-1 |
iPP | Integrated Primary Productivity | milli gr C m-2 h-1 |
PP_mean | Primary Productivity Mean | milli gr C m-2 h-1 |
PP_sd | Primary Productivity Standard Deviation | milli gr C m-2 h-1 |
MLD | Mixed Layer Depth | meters |
DCML | Deep chlorophyll maximum layer | meters |
Bot_Dep | Bottle Depth | meters |
Dinoflagellates_ave_abundance | Average concentration of Dinoflagellate cells in seawater | cell mI-1 |
Actiniscus_pentasterias | Concentration of Actiniscus pentasterias cells in seawater | cell I-1 |
Akashiwo_sanguinea | Concentration of Akashiwo sanguinea cells in seawater | cell I-1 |
Alexandrium_minutum | Concentration of Alexandrium minutum cells in seawater | cell I-1 |
Alexandrium_sp_1 | Concentration of Alexandrium sp. 1 cells in seawater | cell I-1 |
Alexandrium_sp | Concentration of Alexandrium sp. cells in seawater | cell I-1 |
Blepharocysta_paulseni | Concentration of Blepharocysta paulseni cells in seawater | cell I-1 |
Blepharocysta_splendormaris | Concentration of Blepharocysta splendormaris cells in seawater | cell I-1 |
Brachydinium_capitatum | Concentration of Brachydinium capitatum cells in seawater | cell I-1 |
Centrodinium_sp | Concentration of Centrodinium sp. cells in seawater | cell I-1 |
Ceratium_arietinum | Concentration of Ceratium arietinum cells in seawater | cell I-1 |
Ceratium_belone | Concentration of Ceratium belone cells in seawater | cell I-1 |
Ceratium_candelabrum | Concentration of Ceratium candelabrum cells in seawater | cell I-1 |
Ceratium_contortum | Concentration of Ceratium contortum cells in seawater | cell I-1 |
Ceratium_contrarium | Concentration of Ceratium contrarium cells in seawater | cell I-1 |
Ceratium_declinatum | Concentration of Ceratium declinatum cells in seawater | cell I-1 |
Ceratium_extensum | Concentration of Ceratium extensum cells in seawater | cell I-1 |
Ceratium_furca | Concentration of Ceratium furca cells in seawater | cell I-1 |
Ceratium_fusus | Concentration of Ceratium fusus cells in seawater | cell I-1 |
Ceratium_kofoidi | Average concentration of Ceratium kofoidi cells in seawater | cell I-1 |
Ceratium_macroceros | Concentration of Ceratium macroceros cells in seawater | cell I-1 |
Ceratium_massiliense | Concentration of Ceratium massiliense cells in seawater | cell I-1 |
Ceratium_pentagonum | Concentration of Ceratium pentagonum cells in seawater | cell I-1 |
Ceratium_pulchellum | Concentration of Ceratium pulchellum cells in seawater | cell I-1 |
Ceratium_teres | Concentration of Ceratium teres cells in seawater | cell I-1 |
Ceratium_trichoceros | Concentration of Ceratium trichoceros cells in seawater | cell I-1 |
Ceratium_tripos | Average concentration of Ceratium tripos cells in seawater | cell I-1 |
Ceratium_spp | Average concentration of Ceratium spp. cells in seawater | cell I-1 |
Ceratocorys_armata | Average concentration of Ceratocorys armata cells in seawater | cell I-1 |
Ceratocorys_horrida | Concentration of Ceratocorys horrida cells in seawater | cell I-1 |
Ceratoperidinium_ye_ye | Concentration of Ceratoperidinium ye-ye cells in seawater | cell I-1 |
Citharistes_regius | Concentration of Citharistes regius cells in seawater | cell I-1 |
Cladopyxis_brachiolata | Concentration of Cladopyxis brachiolata cells in seawater | cell I-1 |
Cladopyxis_hemibrachiata | Concentration of Cladopyxis hemibrachiata cells in seawater | cell I-1 |
Cochlodinium_spp | Concentration of Cochlodinium spp cells in seawater | cell I-1 |
Corythodinium_tesselatum | Concentration of Corythodinium tesselatum cells in seawater | cell I-1 |
Dinophysis_cf_ovum | Concentration of Dinophysis cf ovum cells in seawater | cell I-1 |
Dinophysis_doryphora | Concentration of Dinophysis doryphora cells in seawater | cell I-1 |
Dinophysis_exigua | Concentration of Dinophysis exigua cells in seawater | cell I-1 |
Dinophysis_operculoides | Concentration of Dinophysis operculoides cells in seawater | cell I-1 |
Dinophysis_parvula | Concentration of Dinophysis parvula cells in seawater | cell I-1 |
Dinophysis_pusilla | Concentration of Dinophysis pusilla cells in seawater | cell I-1 |
Dinophysis_rotundata | Concentration of Dinophysis rotundata cells in seawater | cell I-1 |
Dinophysis_schroederi | Concentration of Dinophysis schroederi cells in seawater | cell I-1 |
Dinophysis_sp_2 | Concentration of Dinophysis sp 2 cells in seawater | cell I-1 |
Dinophysis_sp_3 | Concentration of Dinophysis sp 3 cells in seawater | cell I-1 |
Dinophysis_sp_5 | Concentration of Dinophysis sp 5 cells in seawater | cell I-1 |
Dinophysis_spp_peq_redondos | Concentration of Dinophysis spp peq redondos cells in seawater | cell I-1 |
Erythropsidinium_agile_Hertwig_Silva | Concentration of Erythropsidinium agile Hertwig Silva cells in seawater | cell I-1 |
Goniodoma_polyedricum | Concentration of Goniodoma polyedricum cells in seawater | cell I-1 |
Gonyaulax_birostris | Concentration of Gonyaulax birostris cells in seawater | cell I-1 |
Gonyaulax_dicantha | Concentration of Gonyaulax dicantha cells in seawater | cell I-1 |
Gonyaulax_monocantha | Concentration of Gonyaulax monocantha cells in seawater | cell I-1 |
Gonyaulax_polygramma | Concentration of Gonyaulax polygramma cells in seawater | cell I-1 |
Gonyaulax_spp | Concentration of Gonyaulax spp cells in seawater | cell I-1 |
Gymnodinium_spp_grandes_greater_than_40_um | Concentration of Gymnodinium spp grandes greater than 40 um cells in seawater | cell I-1 |
Gymnodinium_spp_20_to_40_um | Concentration of Gymnodinium spp 20 to 40 um cells in seawater | cell I-1 |
Gymnodinium_sp_calabaza | Concentration of Gymnodinium sp calabaza cells in seawater | cell I-1 |
Gymnodinium_catenatum | Concentration of Gymnodinium catenatum cells in seawater | cell I-1 |
Gymnodinium_elongatum | Concentration of Gymnodinium elongatum cells in seawater | cell I-1 |
Gymnodinium_cf_galeatum | Concentration of Gymnodinium cf galeatum cells in seawater | cell I-1 |
Gyrodinium_impudicum | Concentration of Gyrodinium impudicum cells in seawater | cell I-1 |
Gyrodinium_spp_heterotrofos | Concentration of Gyrodinium spp heterotrofos cells in seawater | cell I-1 |
Heterodinium_spp | Concentration of Heterodinium spp cells in seawater | cell I-1 |
Heterocapsa_spp | Concentration of Heterocapsa spp cells in seawater | cell I-1 |
Histioneis_inclinata | Concentration of Histioneis inclinata cells in seawater | cell I-1 |
Histioneis_oxypteris | Concentration of Histioneis oxypteris cells in seawater | cell I-1 |
Histioneis_paraformis | Concentration of Histioneis paraformis cells in seawater | cell I-1 |
Histioneis_robusta | Concentration of Histioneis robusta cells in seawater | cell I-1 |
Histioneis_rotundata | Concentration of Histioneis rotundata cells in seawater | cell I-1 |
Histioneis_speciosa | Concentration of Histioneis speciosa cells in seawater | cell I-1 |
Karenia_papilionacea | Concentration of Karenia papilionacea cells in seawater | cell I-1 |
Karlodinium_spp | Concentration of Karlodinium spp cells in seawater | cell I-1 |
Katodinium_glaucum | Concentration of Katodinium glaucum cells in seawater | cell I-1 |
Kofoidinium_velelloides | Concentration of Kofoidinium velelloides cells in seawater | cell I-1 |
Lingulodinium_polyedrum | Concentration of Lingulodinium polyedrum cells in seawater | cell I-1 |
Mesoporos_perforatus | Concentration of Mesoporos perforatus cells in seawater | cell I-1 |
Micracanthodinium_claytonii | Concentration of Micracanthodinium claytonii cells in seawater | cell I-1 |
Ornithocercus_magnificus | Concentration of Ornithocercus magnificus cells in seawater | cell I-1 |
Ornithocercus_quadratus | Concentration of Ornithocercus quadratus cells in seawater | cell I-1 |
Ornithocercus_thumi | Concentration of Ornithocercus thumi cells in seawater | cell I-1 |
Oxytoxum_areolatum | Concentration of Oxytoxum areolatum cells in seawater | cell I-1 |
Oxytoxum_caudatum | Concentration of Oxytoxum caudatum cells in seawater | cell I-1 |
Oxytoxum_constrictum | Concentration of Oxytoxum constrictum cells in seawater | cell I-1 |
Oxytoxum_coronatum | Concentration of Oxytoxum coronatum cells in seawater | cell I-1 |
Oxytoxum_curvatum | Concentration of Oxytoxum curvatum cells in seawater | cell I-1 |
Oxytoxum_diploconus | Concentration of Oxytoxum diploconus cells in seawater | cell I-1 |
Oxytoxum_longiceps | Concentration of Oxytoxum longiceps cells in seawater | cell I-1 |
Oxytoxum_margalefi | Concentration of Oxytoxum margalefi cells in seawater | cell I-1 |
Oxytoxum_mediterraneum | Concentration of Oxytoxum mediterraneum cells in seawater | cell I-1 |
Oxytoxum_minutum | Concentration of Oxytoxum minutum cells in seawater | cell I-1 |
Oxytoxum_mitra | Concentration of Oxytoxum mitra cells in seawater | cell I-1 |
Oxytoxum_ovale | Concentration of Oxytoxum ovale cells in seawater | cell I-1 |
Oxytoxum_rampii | Concentration of Oxytoxum rampii cells in seawater | cell I-1 |
Oxytoxum_sceptrum | Concentration of Oxytoxum sceptrum cells in seawater | cell I-1 |
Oxytoxum_scolopax | Concentration of Oxytoxum scolopax cells in seawater | cell I-1 |
Oxytoxum_tonollii | Concentration of Oxytoxum tonollii cells in seawater | cell I-1 |
Oxytoxum_variabile | Concentration of Oxytoxum variabile cells in seawater | cell I-1 |
Oxytoxum_sp_2 | Concentration of Oxytoxum sp 2 cells in seawater | cell I-1 |
Oxytoxum_sp_3 | Concentration of Oxytoxum sp 3 cells in seawater | cell I-1 |
Oxytoxum_sp_4 | Concentration of Oxytoxum sp 4 cells in seawater | cell I-1 |
Oxytoxum_sp_6 | Concentration of Oxytoxum sp 6 cells in seawater | cell I-1 |
Oxytoxum_sp_8 | Concentration of Oxytoxum sp 8 cells in seawater | cell I-1 |
Oxytoxum_sp_10 | Concentration of Oxytoxum sp 10 cells in seawater | cell I-1 |
Oxytoxum_sp_11 | Concentration of Oxytoxum sp 11 cells in seawater | cell I-1 |
Oxytoxum_spp | Concentration of Oxytoxum spp cells in seawater | cell I-1 |
Paleophalacroma_unicintum | Concentration of Paleophalacroma unicintum cells in seawater | cell I-1 |
Parahistioneis_paraformis | Concentration of Parahistioneis paraformis cells in seawater | cell I-1 |
Podolampas_bipes | Concentration of Podolampas bipes cells in seawater | cell I-1 |
Podolampas_elegans | Concentration of Podolampas elegans cells in seawater | cell I-1 |
Podolampas_palmipes | Concentration of Podolampas palmipes cells in seawater | cell I-1 |
Podolampas_reticulata | Concentration of Podolampas reticulata cells in seawater | cell I-1 |
Podolampas_spinifer | Concentration of Podolampas spinifer cells in seawater | cell I-1 |
Pronoctiluca_acuta | Concentration of Pronoctiluca acuta cells in seawater | cell I-1 |
Pronoctiluca_pelagica | Concentration of Pronoctiluca pelagica cells in seawater | cell I-1 |
Prorocentrum_balticum | Concentration of Prorocentrum balticum cells in seawater | cell I-1 |
Prorocentrum_compressum | Concentration of Prorocentrum compressum cells in seawater | cell I-1 |
Prorocentrum_dentatum | Concentration of Prorocentrum dentatum cells in seawater | cell I-1 |
Prorocentrum_cf_donghaiense | Concentration of Prorocentrum cf donghaiense cells in seawater | cell I-1 |
Prorocentrum_gracile | Concentration of Prorocentrum gracile cells in seawater | cell I-1 |
Prorocentrum_mexicanum | Concentration of Prorocentrum mexicanum cells in seawater | cell I-1 |
Prorocentrum_rostratum | Concentration of Prorocentrum rostratum cells in seawater | cell I-1 |
Prorocentrum_rotundatum | Concentration of Prorocentrum rotundatum cells in seawater | cell I-1 |
Prorocentrum_vaginulum | Concentration of Prorocentrum vaginulum cells in seawater | cell I-1 |
Prorocentrum_sp_1 | Concentration of Prorocentrum sp 1 cells in seawater | cell I-1 |
Prorocentrum_sp_5 | Concentration of Prorocentrum sp 5 cells in seawater | cell I-1 |
Protoceratium_areolatum | Concentration of Protoceratium areolatum cells in seawater | cell I-1 |
Protoceratium_reticulatum | Concentration of Protoceratium reticulatum cells in seawater | cell I-1 |
Protoperidinium_depressum | Concentration of Protoperidinium depressum cells in seawater | cell I-1 |
Protoperidinium_divergens | Concentration of Protoperidinium divergens cells in seawater | cell I-1 |
Protoperidinium_globulus | Concentration of Protoperidinium globulus cells in seawater | cell I-1 |
Protoperidinium_mite | Concentration of Protoperidinium mite cells in seawater | cell I-1 |
Protoperidinium_cf_oviforme | Concentration of Protoperidinium cf oviforme cells in seawater | cell I-1 |
Protoperidinium_steinii | Concentration of Protoperidinium steinii cells in seawater | cell I-1 |
Protoperidinium_sp_1 | Concentration of Protoperidinium sp 1 cells in seawater | cell I-1 |
Protoperidinium_sp_3 | Concentration of Protoperidinium sp 3 cells in seawater | cell I-1 |
Protoperidinium_sp_4 | Concentration of Protoperidinium sp 4 cells in seawater | cell I-1 |
Protoperidinium_sp_5 | Concentration of Protoperidinium sp 5 cells in seawater | cell I-1 |
Protoperidinium_sp_7 | Concentration of Protoperidinium sp 7 cells in seawater | cell I-1 |
Protoperidinium_sp_8 | Concentration of Protoperidinium sp 8 cells in seawater | cell I-1 |
Protoperidinium_spp | Concentration of Protoperidinium spp cells in seawater | cell I-1 |
Pseliodinium_vaubani | Concentration of Pseliodinium vaubani cells in seawater | cell I-1 |
Pyrocystis_obtusa | Concentration of Pyrocystis obtusa cells in seawater | cell I-1 |
Pyrocystis_robusta | Concentration of Pyrocystis robusta cells in seawater | cell I-1 |
Pyrophacus_horologium | Concentration of Pyrophacus horologium cells in seawater | cell I-1 |
Scrippsiella_spp | Concentration of Scrippsiella spp cells in seawater | cell I-1 |
Scaphodinium_mirabile | Concentration of Scaphodinium mirabile cells in seawater | cell I-1 |
Torodinium_robustum | Concentration of Torodinium robustum cells in seawater | cell I-1 |
Dino_sp_2 | Concentration of Dino sp 2 cells in seawater | cell I-1 |
Dino_sp_4 | Concentration of Dino sp 4 cells in seawater | cell I-1 |
Dino_sp_6 | Concentration of Dino sp 6 cells in seawater | cell I-1 |
Dino_sp_9 | Concentration of Dino sp 9 cells in seawater | cell I-1 |
Dino_sp_10 | Concentration of Dino sp 10 cells in seawater | cell I-1 |
Dino_sp_11 | Concentration of Dino sp 11 cells in seawater | cell I-1 |
Dino_sp_12 | Concentration of Dino sp 12 cells in seawater | cell I-1 |
Dino_sp_15 | Concentration of Dino sp 15 cells in seawater | cell I-1 |
Dino_sp_26 | Concentration of Dino sp 26 cells in seawater | cell I-1 |
Unidentified_dinoflagellates_with_inclusion_bodies | Concentration of Unidentified dinoflagellates with inclusion bodies cells in seawater | cell I-1 |
Dinoflagellate_cysts | Concentration of Dinoflagellate cysts cells in seawater | cell I-1 |
Unidentified_dinoflagellates_large | Concentration of Unidentified dinoflagellates large cells in seawater | cell I-1 |
Unidentified_dinoflagellates_small_less_than_20_um | Concentration of Unidentified dinoflagellates small less than 20 um cells in seawater | cell I-1 |
Diatoms_ave_abundance | Concentration of Diatoms ave abundance cells in seawater | cell I-1 |
Asterolampra_marylandica | Concentration of Asterolampra marylandica cells in seawater | cell I-1 |
Asterolampra_sp_6_radios | Concentration of Asterolampra sp 6 radios cells in seawater | cell I-1 |
Asteromphalus_heptactis | Concentration of Asteromphalus heptactis cells in seawater | cell I-1 |
Asteromphalus_hookeri | Concentration of Asteromphalus hookeri cells in seawater | cell I-1 |
Asteromphalus_spp | Concentration of Asteromphalus spp cells in seawater | cell I-1 |
Bacteriastrum_elongatum | Concentration of Bacteriastrum elongatum cells in seawater | cell I-1 |
Bacteriastrum_spp | Concentration of Bacteriastrum spp cells in seawater | cell I-1 |
Cerataulina_pelagica | Concentration of Cerataulina pelagica cells in seawater | cell I-1 |
Chaetoceros_atlanticus | Concentration of Chaetoceros atlanticus cells in seawater | cell I-1 |
Chaetoceros_dadayi | Concentration of Chaetoceros dadayi cells in seawater | cell I-1 |
Chaetoceros_didymus | Concentration of Chaetoceros didymus cells in seawater | cell I-1 |
Chaetoceros_lorenzianus | Concentration of Chaetoceros lorenzianus cells in seawater | cell I-1 |
Chaetoceros_peruvianus | Concentration of Chaetoceros peruvianus cells in seawater | cell I-1 |
Chaetoceros_sp_1 | Concentration of Chaetoceros sp 1 cells in seawater | cell I-1 |
Chaetoceros_spp_large_greater_than_20_um | Concentration of Chaetoceros spp large greater than 20 um cells in seawater | cell I-1 |
Chaetoceros_spp_peq_less_than_20_um | Concentration of Chaetoceros spp peq less than 20 um cells in seawater | cell I-1 |
Climacodium_frauenfeldianum | Concentration of Climacodium frauenfeldianum cells in seawater | cell I-1 |
Coscinodiscus_spp | Concentration of Coscinodiscus spp cells in seawater | cell I-1 |
Cylindrotheca_closterium | Concentration of Cylindrotheca closterium cells in seawater | cell I-1 |
Guinardia_cylindrus | Concentration of Guinardia cylindrus cells in seawater | cell I-1 |
Guinardia_striata | Concentration of Guinardia striata cells in seawater | cell I-1 |
Haslea_sp | Concentration of Haslea sp cells in seawater | cell I-1 |
Hemidiscus_cuneiformis | Concentration of Hemidiscus cuneiformis cells in seawater | cell I-1 |
Hemiaulus_hauckii | Concentration of Hemiaulus hauckii cells in seawater | cell I-1 |
Hemiaulus_membranaceus | Concentration of Hemiaulus membranaceus cells in seawater | cell I-1 |
Hemiaulus_sinensis | Concentration of Hemiaulus sinensis cells in seawater | cell I-1 |
Leptocylindrus_mediterraneus_Rhizomonas_setigera | Concentration of Leptocylindrus mediterraneus Rhizomonas setigera cells in seawater | cell I-1 |
Lioloma_spp | Concentration of Lioloma spp cells in seawater | cell I-1 |
Planktoniella_sol | Concentration of Planktoniella sol cells in seawater | cell I-1 |
Proboscia_alata | Concentration of Proboscia alata cells in seawater | cell I-1 |
Pseudo_nitzschia_spp | Concentration of Pseudo nitzschia spp cells in seawater | cell I-1 |
Pseudosolenia_calcar_avis | Concentration of Pseudosolenia calcar avis cells in seawater | cell I-1 |
Rhizosolenia_hebetata | Concentration of Rhizosolenia hebetata cells in seawater | cell I-1 |
Rhizosolenia_robusta | Concentration of Rhizosolenia robusta cells in seawater | cell I-1 |
Rhizosolenia_simplex | Concentration of Rhizosolenia simplex cells in seawater | cell I-1 |
Rhizosolenia_spp | Concentration of Rhizosolenia spp cells in seawater | cell I-1 |
Thalassionema_spp | Concentration of Thalassionema spp cells in seawater | cell I-1 |
Thalassiosira_spp | Concentration of Thalassiosira spp cells in seawater | cell I-1 |
Pennate_diatom_sp_1 | Concentration of Pennate diatom sp 1 cells in seawater | cell I-1 |
Pennate_diatom_sp_2 | Concentration of Pennate diatom sp 2 cells in seawater | cell I-1 |
Pennate_diatom_sp_3 | Concentration of Pennate diatom sp 3 cells in seawater | cell I-1 |
Unidentified_centric_diatoms | Concentration of Unidentified centric diatoms cells in seawater | cell I-1 |
Unidentified_pennate_diatoms | Concentration of Unidentified pennate diatoms cells in seawater | cell I-1 |
Pennate_diatoms_large | Concentration of Pennate diatoms large cells in seawater | cell I-1 |
Pennate_diatoms_less_than_20_um | Concentration of Pennate diatoms less than 20 um cells in seawater | cell I-1 |
Coccolithophores_ave_abundance | Concentration of Coccolithophores ave abundance cells in seawater | cell I-1 |
Acanthoica_quattrospina | Concentration of Acanthoica quattrospina cells in seawater | cell I-1 |
Algirosphaera_robusta | Concentration of Algirosphaera robusta cells in seawater | cell I-1 |
Calcidiscus_leptoporus | Concentration of Calcidiscus leptoporus cells in seawater | cell I-1 |
Calciosolenia_brasiliensis | Concentration of Calciosolenia brasiliensis cells in seawater | cell I-1 |
Calciosolenia_murrayi | Concentration of Calciosolenia murrayi cells in seawater | cell I-1 |
Calciopappus_rigidus | Concentration of Calciopappus rigidus cells in seawater | cell I-1 |
Ceratolithus_cristatus | Concentration of Ceratolithus cristatus cells in seawater | cell I-1 |
Discosphaera_tubifera | Concentration of Discosphaera tubifera cells in seawater | cell I-1 |
Helicosphaera_carteri | Concentration of Helicosphaera carteri cells in seawater | cell I-1 |
Michaelsarsia_adriaticus | Concentration of Michaelsarsia adriaticus cells in seawater | cell I-1 |
Michaelsarsia_elegans | Concentration of Michaelsarsia elegans cells in seawater | cell I-1 |
Oolithotus_spp | Concentration of Oolithotus spp cells in seawater | cell I-1 |
Ophiaster_hydroideus | Concentration of Ophiaster hydroideus cells in seawater | cell I-1 |
Palusphaera_spp | Concentration of Palusphaera spp cells in seawater | cell I-1 |
Papposphaera_sp | Concentration of Papposphaera sp cells in seawater | cell I-1 |
Poricalyptra_aurisinae | Concentration of Poricalyptra aurisinae cells in seawater | cell I-1 |
Pontosphaera_syracusana | Concentration of Pontosphaera syracusana cells in seawater | cell I-1 |
Reticulofenestra_sessilis | Concentration of Reticulofenestra sessilis cells in seawater | cell I-1 |
Rhabdosphaera_clavigera | Concentration of Rhabdosphaera clavigera cells in seawater | cell I-1 |
Scisphosphaera_apsteinii | Concentration of Scisphosphaera apsteinii cells in seawater | cell I-1 |
Syracosphaera_pulchra_HET | Concentration of Syracosphaera pulchra HET cells in seawater | cell I-1 |
Syracosphaera_pulchra_HOL | Concentration of Syracosphaera pulchra HOL cells in seawater | cell I-1 |
Syracosphaera_pirus | Concentration of Syracosphaera pirus cells in seawater | cell I-1 |
Syracosphaera_prolongata | Concentration of Syracosphaera prolongata cells in seawater | cell I-1 |
Syracosphaera_sp | Concentration of Syracosphaera sp cells in seawater | cell I-1 |
Syracosphaera_spp | Concentration of Syracosphaera spp cells in seawater | cell I-1 |
Umbellosphaera_irregularis | Concentration of Umbellosphaera irregularis cells in seawater | cell I-1 |
Umbilicosphaera_anulus | Concentration of Umbilicosphaera anulus cells in seawater | cell I-1 |
Umbilicosphaera_sibogae | Concentration of Umbilicosphaera sibogae cells in seawater | cell I-1 |
Coco_sp_1 | Concentration of Coco sp 1 cells in seawater | cell I-1 |
Coco_sp_2 | Concentration of Coco sp 2 cells in seawater | cell I-1 |
Coco_sp_4 | Concentration of Coco sp 4 cells in seawater | cell I-1 |
Coco_sp_5 | Concentration of Coco sp 5 cells in seawater | cell I-1 |
Coco_sp_6 | Concentration of Coco sp 6 cells in seawater | cell I-1 |
Coco_sp_9 | Concentration of Coco sp 9 cells in seawater | cell I-1 |
Coco_sp_11 | Concentration of Coco sp 11 cells in seawater | cell I-1 |
Coco_sp_12 | Concentration of Coco sp 12 cells in seawater | cell I-1 |
Coco_sp_15 | Concentration of Coco sp 15 cells in seawater | cell I-1 |
Coco_sp_18 | Concentration of Coco sp 18 cells in seawater | cell I-1 |
Coco_sp_19 | Concentration of Coco sp 19 cells in seawater | cell I-1 |
Unidentified_coccolitjhophores_large | Concentration of Unidentified coccolitjhophores large cells in seawater | cell I-1 |
Unidentified_coccolithophores_small_less_than_10um | Concentration of Unidentified coccolithophores small less than 10um cells in seawater | cell I-1 |
Dataset-specific Instrument Name | Conductivity-Temperature-Depth (CTD) divise SeaBird 9/11-plus |
Generic Instrument Name | CTD Sea-Bird 911 |
Dataset-specific Description | Two vertical profiles of Conductivity-Temperature-Depth (CTD) were carried out at
a fixed position every day, a first one down to 4000 m depth at 5:00 and a second one, starting
around 10:00 local time, down to 200 m depth. The CTD, a SeaBird 9/11-plus, was equipped
with dual conductivity and temperature sensors, calibrated at the SeaBird laboratory before the
cruise. Water samples were obtained using a rosette of 24 10-liter Niskin bottles. Profiles of
underwater photosynthetically active radiation (PAR) were obtained with a 4π Biospherical
QCP2300-HP sensor attached to the CTD. |
Generic Instrument Description | The Sea-Bird SBE 911 is a type of CTD instrument package. The SBE 911 includes the SBE 9 Underwater Unit and the SBE 11 Deck Unit (for real-time readout using conductive wire) for deployment from a vessel. The combination of the SBE 9 and SBE 11 is called a SBE 911. The SBE 9 uses Sea-Bird's standard modular temperature and conductivity sensors (SBE 3 and SBE 4). The SBE 9 CTD can be configured with auxiliary sensors to measure other parameters including dissolved oxygen, pH, turbidity, fluorescence, light (PAR), light transmission, etc.). More information from Sea-Bird Electronics. |
Dataset-specific Instrument Name | Thermo Element 2 HR-ICP-MS |
Generic Instrument Name | Elemental Analyzer |
Dataset-specific Description | Metal concentrations were analyzed as described in [25] using a Thermo Element 2 HR-ICP-MS. |
Generic Instrument Description | Instruments that quantify carbon, nitrogen and sometimes other elements by combusting the sample at very high temperature and assaying the resulting gaseous oxides. Usually used for samples including organic material. |
Dataset-specific Instrument Name | Turner Designs fluorimeter |
Generic Instrument Name | Fluorometer |
Dataset-specific Description | The fluorescence of the acetonic extracts was determined with a Turner Designs fluorimeter calibrated with a Chl a standard (Sigma-Aldrich); no phaeopigment correction was applied. |
Generic Instrument Description | A fluorometer or fluorimeter is a device used to measure parameters of fluorescence: its intensity and wavelength distribution of emission spectrum after excitation by a certain spectrum of light. The instrument is designed to measure the amount of stimulated electromagnetic radiation produced by pulses of electromagnetic radiation emitted into a water sample or in situ. |
Dataset-specific Instrument Name | Inverted microscope 125X magnification |
Generic Instrument Name | Inverted Microscope |
Dataset-specific Description | Approximately 250 cm3 of water were placed in a glass bottle and fixed with hexamine-buffered
formaldehyde solution (4% final formalin concentration). A 100 cm3 composite chamber
was filled with sample water and its content was allowed to settle for 48 hours. At least two
transects of the chamber bottom were observed with an inverted microscope [4] at 312 X
magnification to enumerate the most frequent, generally smaller, phytoplankton forms. Additionally,
the whole chamber bottom was examined at 125 X magnification to count the larger,
less frequent cells. In both cases, all cells encountered were tallied. |
Generic Instrument Description | An inverted microscope is a microscope with its light source and condenser on the top, above the stage pointing down, while the objectives and turret are below the stage pointing up. It was invented in 1850 by J. Lawrence Smith, a faculty member of Tulane University (then named the Medical College of Louisiana).
Inverted microscopes are useful for observing living cells or organisms at the bottom of a large container (e.g. a tissue culture flask) under more natural conditions than on a glass slide, as is the case with a conventional microscope. Inverted microscopes are also used in micromanipulation applications where space above the specimen is required for manipulator mechanisms and the microtools they hold, and in metallurgical applications where polished samples can be placed on top of the stage and viewed from underneath using reflecting objectives.
The stage on an inverted microscope is usually fixed, and focus is adjusted by moving the objective lens along a vertical axis to bring it closer to or further from the specimen. The focus mechanism typically has a dual concentric knob for coarse and fine adjustment. Depending on the size of the microscope, four to six objective lenses of different magnifications may be fitted to a rotating turret known as a nosepiece. These microscopes may also be fitted with accessories for fitting still and video cameras, fluorescence illumination, confocal scanning and many other applications. |
Dataset-specific Instrument Name | Skalar AutoAnalyzer |
Generic Instrument Name | Nutrient Autoanalyzer |
Dataset-specific Description | Dissolved inorganic nutrients were analyzed with a Skalar AutoAnalyzer, using the procedures of Grasshoff et al. [23], as described in [24]. Metal concentrations were analyzed as described in [25] using a Thermo Element 2 HR-ICP-MS. |
Generic Instrument Description | Nutrient Autoanalyzer is a generic term used when specific type, make and model were not specified. In general, a Nutrient Autoanalyzer is an automated flow-thru system for doing nutrient analysis (nitrate, ammonium, orthophosphate, and silicate) on seawater samples. |
Website | |
Platform | R/V Sarmiento de Gamboa |
Start Date | 2010-12-16 |
End Date | 2011-07-10 |
Description | The Malaspina circumnavigation of 2010 was an interdisciplinary research project whose main objectives were to evaluate the impact of global change on the ocean as well as to explore its biodiversity. It began in December 2010 with the departure from Cádiz of the oceanographic research vessel Hespérides operated by the Spanish Navy. After a voyage passing through Rio de Janeiro, Cape Town, Perth, Sydney, Auckland, Honolulu, Cartagena de Indias and Panama, it returned to Spain in July 2011. At the same time, the ship Sarmiento de Gamboa, operated by the Spanish National Research Council (CSIC), worked in parallel between Las Palmas de Gran Canaria, Santo Domingo and Vigo. In this way, for seven months, over 250 scientists aboard the two ships carried out an expedition combining cutting-edge scientific research with the training of young researchers, and the promotion of marine science and scientific culture in society.
(description from: https://sandrarebok.net/malaspina-2010) |
Website | |
Platform | R/V Hespérides |
Start Date | 2010-12-16 |
End Date | 2011-07-10 |
Description | The Malaspina circumnavigation of 2010 was an interdisciplinary research project whose main objectives were to evaluate the impact of global change on the ocean as well as to explore its biodiversity. It began in December 2010 with the departure from Cádiz of the oceanographic research vessel Hespérides operated by the Spanish Navy. After a voyage passing through Rio de Janeiro, Cape Town, Perth, Sydney, Auckland, Honolulu, Cartagena de Indias and Panama, it returned to Spain in July 2011. At the same time, the ship Sarmiento de Gamboa, operated by the Spanish National Research Council (CSIC), worked in parallel between Las Palmas de Gran Canaria, Santo Domingo and Vigo. In this way, for seven months, over 250 scientists aboard the two ships carried out an expedition combining cutting-edge scientific research with the training of young researchers, and the promotion of marine science and scientific culture in society.
(description from: https://sandrarebok.net/malaspina-2010) |
NSF Award Abstract:
B-vitamins (thiamin, B1; biotin B7; cobalamin, B12) are organic molecules necessary for all the biological transformations of the chemical elements that support life on Earth. Without the activity of those molecules, the chemistry of life on Earth—as we know it—would end. In marine systems, the availability of B-vitamins also affects food web dynamics by controlling both bacterial and phytoplankton growth and species diversity. Because many organisms that can make several B-vitamins lack the ability to synthesize others, their vitamin needs and environmental accessibility could define which, when, and where specific phytoplankton species flourish. As a result, planktonic communities in nature need to constantly share B-vitamins in a complex mosaic of interdependencies. Despite the early discovery of their relevance in the 1940s, most current marine vitamin research is still based on laboratory experiments or studies focusing on the biological responses of B-vitamin additions on algae and bacteria. Yet, vitamin distributions in the world ocean are mostly unknown, as they have only been measured in a few marine basins. Thus, the actual effect of their natural distributions in phytoplankton communities is still a mystery today. The main goal of this project is to elucidate the effects of B-vitamins availability on the spatial distributions of different phytoplankton species in surface waters of the world ocean. These data are needed to start untangling the rules by which members of the microbial plankton are interconnected through vitamin exchange and to determine how these essential interrelations may control surface ocean ecosystem functioning, such as phytoplankton and bacterial growth. Ultimately understanding these controls and their dynamics is critical to predicting future changes in the marine environment. In the future greenhouse world, the ocean is expected to be of paramount importance, providing the required protein to nurture future human populations and to reduce the levels of human-produced atmospheric CO2 through its uptake by photosynthetic organisms with different vitamin requirements.
This study is to establish the first global map of B-vitamin distributions in surface waters of the world ocean collected during the Malaspina circumnavigation expedition. This global map of vitamins is being used to determine their importance on phytoplankton species biogeography, a still unresolved ecological riddle. Another objective of the study is to establish how ambient vitamin concentrations, combined with bioactive trace elements and macronutrients, promote changes in the relative abundance of different eukaryotic and prokaryotic plankton species on the surface ocean. Overall, this is the first global study on the role of B-vitamins on ecosystem functioning and species composition in subtropical and tropical open ocean environments including the ocean gyres. The investigators are carrying out targeted metagenomic analyses to identify B-vitamins synthesizers and consumers within the planktonic community at several globally distributed stations across the Atlantic, Pacific, and Indian oceans. The extensive datasets already generated by the hundreds of participants of the Malaspina expedition is fully available to interpret the vitamin results. This study allows us to expand our understanding of B-vitamin distributions on a global scale and further investigate how surface ocean’s plankton community dynamics are intertwined with ambient B-vitamin pools.
This award reflects NSF's statutory mission and has been deemed worthy of support through evaluation using the Foundation's intellectual merit and broader impacts review criteria.
Funding Source | Award |
---|---|
NSF Division of Ocean Sciences (NSF OCE) |