Contributors | Affiliation | Role |
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Young, Jodi N. | University of Washington (UW) | Principal Investigator |
Rauch, Shannon | Woods Hole Oceanographic Institution (WHOI BCO-DMO) | BCO-DMO Data Manager |
Field sampling:
Ice samples for primary production measurements were collected mid-morning from 6 stations along the western Antarctic Peninsula in November and December of 2019 on board the R/V Nathaniel B. Palmer along a north-south transect from 64.8°S to 67.8°S. For Stations (Stns) 2 and 3, the ice was "rotten" (sufficiently melted to be disintegrating structurally, present only in small pieces) and collected as an ice-seawater slurry. Small ice chunks were collected directly from the sea surface via a crane-suspended "personnel basket". At the additional 4 stations, sea ice was collected by coring the ice. At Stns 4 and 7, algal samples were collected from internal ice-core layers. Stns 4 and 7 were rafted floes with a flooded internal layer, with Stn 7 > 2500 square meters (m²) in size. Stns 5 and 6 were on landfast sea ice, where the algae were collected from the bottom 10 centimeters (cm) of the ice. At these 4 stations (Stns 4 through 7), ice cores were taken with a 7.5 cm Kovacs corer separated by at least 1 m horizontally. Cores were shaded from direct sunlight, while 5 to 10 cm of the visible algal band at the bottom or middle was sectioned with an ethanol-cleaned saw and placed into acid-washed (10% HCl) containers. Each replicate consisted of either a single core (for 10 cm sections) or pools of two cores (for 5 cm sections).
All ice samples were stored in dark, insulated containers for a maximum of 4 hours. On the ship, all ice samples used for primary production measurements were melted in a 3:1 volumetric ratio of melting solution to ice to minimize the effect of the melt on sea-ice communities. The melting solution was a 0.2 micrometer (μm) filtered artificial salt mixture containing three main sea salts plus bicarbonate according to ESAW artificial seawater (3.63 x 10⁻¹ molar (M) NaCl, 4.71 x 10⁻² M MgCl₂.6H₂O, 2.5 x 10⁻² M Na₂SO₄, and 2 x 10⁻³ M NaHCO₃⁻, salinity 35). Additional ice cores collected for ancillary biological measurements were melted in a 1:1 volumetric ratio of melting solution to ice. Melts were conducted in the dark at approximately 20° Celsius (C). To speed the melting process, ice samples were further broken into pieces with acid-washed pickaxes with most ice completely melted within 5 hours. Volume and salinity were measured as soon as the ice was completely melted, with sample temperatures remaining below 0°C. All reported volumes were corrected to the original ice volume.
Pigments:
A subsample of 1:1 melt volume was filtered on 25-millimeter (mm) GF/Fs for pigment analysis by high-performance liquid chromatography (HPLC). Filters were promptly flash-frozen in liquid nitrogen and stored at -80°C until analysis. Reverse-phase high-pressure liquid chromatography was conducted at the University of South Carolina after the method detailed by Pinckney et al. (1998). To estimate the relative abundance of diatoms, Phaeocystis, and cryptophytes (as contribution to Chl a in milligrams per liter (mg L⁻¹)), the respective diagnostic pigments of fucoxanthin, 19' hexanoyloxyfucoxanthin, and alloxanthin were used as in Everitt et al. (1990) and Arrigo et al. (2000). Pigment data was qualitatively confirmed via light microscopy.
Analysis was carried out at the University of South Carolina Photopigment Analysis Facility. Details of instrumentation and protocols can be found at https://phytoninja.com/lab-protocols/ (see "HPLC Photopigment Analysis Method (technical version)") or in the attached PDF "Long_HPLC_Method.pdf".
- Imported original file "phspigments.csv" into the BCO-DMO system.
- Converted the Date field to YYYY-MM-DD format.
- Split the Location column into two separate columns for Latitude and Longitude and made the values negative (for South and West directions).
- Renamed fields to comply with BCO-DMO naming conventions.
- Corrected a typo in the description column (replaced '0' with a closing parens ')' symbol in the last 5 rows).
- Saved the final file as "913222_v1_photosynthetic_pigments.csv".
File |
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913222_v1_photosynthetic_pigments.csv (Comma Separated Values (.csv), 4.84 KB) MD5:8f44a15d4095554c36e2d7d3dc505827 Primary data file for dataset ID 913222, version 1. |
File |
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Long_HPLC_Method.pdf (Portable Document Format (.pdf), 184.42 KB) MD5:ced361470d4febd1f03a6f0da007594d Description of the HPLC methods; originally from https://phytoninja.com/lab-protocols/ |
Parameter | Description | Units |
Date | date sample was collected | unitless |
Latitude | latitude where sample was collected; negative values = South | decimal degrees |
Longitude | longitude where sample was collected; negative values = West | decimal degrees |
Description | description of sample | unitless |
Sample_id | unique identifier of sample | unitless |
Replicate | unique replicate | unitless |
Chl_c3 | concentration of chlorophyll c3 | micrograms per liter (ug/L) |
Chl_c1c2 | concentration of chlorophyll c1 and C2 | micrograms per liter (ug/L) |
Perid | concentration of peridinin | micrograms per liter (ug/L) |
ButFuc19 | concentration of 19'-butanoyloxyfucoxanthin | micrograms per liter (ug/L) |
Fuco | concentration of Fucoxanthin | micrograms per liter (ug/L) |
HexFuc19 | concentration of 19'-hexanoyloxyfucoxanthin | micrograms per liter (ug/L) |
Neo | concentration of cis-neoxanthin | micrograms per liter (ug/L) |
Prasino | concentration of prasinoxanthin | micrograms per liter (ug/L) |
Viola | concentration of violaxanthin | micrograms per liter (ug/L) |
Diad | concentration of diadinoxanthin | micrograms per liter (ug/L) |
Anther | concentration of antheraxanthin | micrograms per liter (ug/L) |
Allox | concentration of alloxanthin | micrograms per liter (ug/L) |
Diat | concentration of diatoxanthin | micrograms per liter (ug/L) |
Lutein | concentration of Lutein | micrograms per liter (ug/L) |
Zeax | concentration of Zeaxanthin | micrograms per liter (ug/L) |
Gyro | concentration of gryoxanthin-diester | micrograms per liter (ug/L) |
Chl_b | concentration of chlorophyll b | micrograms per liter (ug/L) |
Chla_Allomer | concentration of chlorophyll a allomer | micrograms per liter (ug/L) |
Chl_a | concentration of chlorophyll a + divinyl chlorophyll a | micrograms per liter (ug/L) |
Chla_prime | concentration of chlorophyll a' | micrograms per liter (ug/L) |
alpha_Carotene | concentration of alpha Carotene | micrograms per liter (ug/L) |
beta_Carotene | concentration of beta Carotene | micrograms per liter (ug/L) |
Chl_ide_a | concentration of chlorophyllide a | micrograms per liter (ug/L) |
Total_Chl_a | concentration of chl a + chl-ide a + divinyl chl a | micrograms per liter (ug/L) |
ALL_Chl_a | concentration of chla + chla isomers | micrograms per liter (ug/L) |
Dataset-specific Instrument Name | |
Generic Instrument Name | High-Performance Liquid Chromatograph |
Generic Instrument Description | A High-performance liquid chromatograph (HPLC) is a type of liquid chromatography used to separate compounds that are dissolved in solution. HPLC instruments consist of a reservoir of the mobile phase, a pump, an injector, a separation column, and a detector. Compounds are separated by high pressure pumping of the sample mixture onto a column packed with microspheres coated with the stationary phase. The different components in the mixture pass through the column at different rates due to differences in their partitioning behavior between the mobile liquid phase and the stationary phase. |
Dataset-specific Instrument Name | |
Generic Instrument Name | Ice Corer |
Generic Instrument Description | An ice corer is used to drill into deep ice and remove long cylinders of ice from which information about the past and present can be inferred. Polar ice cores contain a record of the past atmosphere - temperature, precipitation, gas content, chemical composition, and other properties. This can reveal a broad spectrum of information on past environmental, and particularly climatic, changes. They can also be used to study bacteria and chlorophyll production in the waters from which the ice core was extracted. |
Dataset-specific Instrument Name | light microscopy |
Generic Instrument Name | Microscope - Optical |
Generic Instrument Description | Instruments that generate enlarged images of samples using the phenomena of reflection and absorption of visible light. Includes conventional and inverted instruments. Also called a "light microscope". |
Website | |
Platform | RVIB Nathaniel B. Palmer |
Start Date | 2019-11-01 |
End Date | 2019-12-15 |
Description | See more information in R2R: https://www.rvdata.us/search/cruise/NBP1910 |
NSF Award Abstract
Rapid changes in the extent and thickness of sea ice during the austral spring subject microorganisms within or attached to the ice to large fluctuations in temperature, salinity, light and nutrients. This project aims to identify cellular responses in sea-ice algae to increasing temperature and decreasing salinity during the spring melt along the western Antarctic Peninsula and to determine how associated changes at the cellular level can potentially affect dynamic, biologically driven processes. Understanding how sea-ice algae cope with, and are adapted to, their environment will not only help predict how polar ecosystems may change as the extent and thickness of sea ice change, but will also provide a better understanding of the widespread success of photosynthetic life on Earth. The scientific context and resulting advances from the research will be communicated to the general public through outreach activities that includes work with Science Communication Fellows and the popular Polar Science Weekend at the Pacific Science Center in Seattle, Washington. The project will provide student training to college students as well as provide for educational experiences for K-12 school children.
There is currently a poor understanding of feedback relationships that exist between the rapidly changing environment in the western Antarctic Peninsula region and sea-ice algal production. The large shifts in temperature and salinity that algae experience during the spring melt affect critical cellular processes, including rates of enzyme-catalyzed reactions involved in photosynthesis and respiration, and the production of stress-protective compounds. These changes in cellular processes are poorly constrained but can be large and may have impacts on local ecosystem productivity and biogeochemical cycles. In particular, this study will focus on the thermal sensitivity of enzymes and the cycling of compatible solutes and exopolymers used for halo- and cryo-protection, and how they influence primary production and the biogeochemical cycling of carbon and nitrogen. Approaches will include field sampling during spring melt, incubation experiments of natural sea-ice communities under variable temperature and salinity conditions, and controlled manipulation of sea-ice algal species in laboratory culture. Employment of a range of techniques, from fast repetition rate fluorometry and gross and net photosynthetic measurements to metabolomics and enzyme kinetics, will tease apart the mechanistic effects of temperature and salinity on cell metabolism and primary production with the goal of quantifying how these changes will impact biogeochemical processes along the western Antarctic Peninsula.
This award reflects NSF's statutory mission and has been deemed worthy of support through evaluation using the Foundation's intellectual merit and broader impacts review criteria.
Funding Source | Award |
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NSF Office of Polar Programs (formerly NSF PLR) (NSF OPP) |