Contributors | Affiliation | Role |
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Cutter, Gregory A. | Old Dominion University (ODU) | Principal Investigator |
Casciotti, Karen L. | Stanford University | Co-Principal Investigator |
Lam, Phoebe J. | University of California-Santa Cruz (UCSC) | Co-Principal Investigator |
Rauch, Shannon | Woods Hole Oceanographic Institution (WHOI BCO-DMO) | BCO-DMO Data Manager |
Pigments were sampled from the shallowest 6 depths (<=150 meters) on every "PigRaTh" cast (including the surface bottle) at all major stations (N=23 stations). Pigments were collected into 2-liter (L) amber bottles, triple-rinsed with sample prior to filling. They were immediately filtered under vacuum through 47-millimeter (mm) GF/F filters. They were folded and placed inside cryovials, labeled with appropriate GEOTRACES numbers, and frozen at -80° Celsius (C). Vials were shipped in LN2 dry shippers to Stanford, and then on dry ice to the HPLC Facility at Oregon State University (OSU) managed by Ricardo Letelier (https://ceoas.oregonstate.edu/ocean-ecology-and-biogeochemistry-facilities).
OSU HPLC facility methods: Our method for pigment analysis is based on the protocol described by Mantoura and Lewellyn (1983) and modified according to Bidigare et al. (1989). Briefly, samples are extracted for up to 48 hours in 100% acetone at -20°C, then analyzed on a Waters 2690 separations module equipped with a C18 column and full spectrum photodiode array detector. Pigment standards for calibration and response factor calculations are obtained from DHI Group in Denmark.
- Imported the first sheet ("HPLC_RR1814") of the original file "HPLC_Pigments_GP15_OSU_bco-dmo_barcodes.xlsx" into the BCO-DMO system.
- Renamed fields/columns to comply with BCO-DMO naming conventions.
- Converted Start_Date_UTC column to YYYY-mm-dd format.
- Removed rows of data dated after 2018-10-19 (those are part of Leg 2, RR1815).
- Saved the final file as "914655_v1_rr1814_hplc_pigments.csv".
File |
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914655_v1_rr1814_hplc_pigments.csv (Comma Separated Values (.csv), 10.31 KB) MD5:cb727443112924eed7a125ef2c058acf Primary data file for dataset ID 914655, version 1 |
Parameter | Description | Units |
Start_Date_UTC | Date (UTC) when sample was collected | unitless |
Event_ID | Event number | unitless |
Sample_ID | GEOTRACES sample number | unitless |
Niskin | Niskin bottle number | unitless |
Sample_Depth | Sample depth | meters (m) |
Station_ID | Station number | unitless |
Cast_number | Cast number | unitless |
Start_Latitude | Latitude where sample was collected; positive values = North | decimal degrees |
Start_Longitude | Longitude where samples were collected; negative values = West | decimal degrees |
But_fuco_HPLC_TP_CONC_BOTTLE_dnax4l | Concentration of 19'-But-Fucoxanthin | nanograms per liter (ng/L) |
Hex_fuco_HPLC_TP_CONC_BOTTLE_aeqqpa | Concentration of 19'-Hex-Fucoxanthin | nanograms per liter (ng/L) |
Allo_HPLC_TP_CONC_BOTTLE_n3dfmg | Concentration of Alloxanthin | nanograms per liter (ng/L) |
Beta_Car_HPLC_TP_CONC_BOTTLE_weksrk | Concentration of Beta Carotene | nanograms per liter (ng/L) |
Alpha_Car_HPLC_TP_CONC_BOTTLE_kc31kx | Concentration of Alpha Carotene | nanograms per liter (ng/L) |
Chl_a_HPLC_TP_CONC_BOTTLE_t7ylyl | Concentration of Chlorophyll a | nanograms per liter (ng/L) |
Chl_b_HPLC_TP_CONC_BOTTLE_0ocmnn | Concentration of Chlorophyll b | nanograms per liter (ng/L) |
Chl_c1_chl_c2_HPLC_TP_CONC_BOTTLE_q8hvyu | Concentration of Chlorophyll c 1&2 | nanograms per liter (ng/L) |
Chl_c3_HPLC_TP_CONC_BOTTLE_xghapc | Concentration of Chlorophyll c 3 | nanograms per liter (ng/L) |
Chlide_a_HPLC_TP_CONC_BOTTLE_b3wnjk | Concentration of Chlorophyllide | nanograms per liter (ng/L) |
Diadino_HPLC_TP_CONC_BOTTLE_edfcfg | Concentration of Diadinoxanthin | nanograms per liter (ng/L) |
Diato_HPLC_TP_CONC_BOTTLE_zldkgz | Concentration of Diatoxanthin | nanograms per liter (ng/L) |
Fuco_HPLC_TP_CONC_BOTTLE_e664mt | Concentration of Fucoxanthin | nanograms per liter (ng/L) |
Lut_HPLC_TP_CONC_BOTTLE_nhojjn | Concentration of Lutein | nanograms per liter (ng/L) |
Neo_HPLC_TP_CONC_BOTTLE_le5llo | Concentration of Neoxanthin | nanograms per liter (ng/L) |
Perid_HPLC_TP_CONC_BOTTLE_jhwjny | Concentration of Peridinin | nanograms per liter (ng/L) |
Pras_HPLC_TP_CONC_BOTTLE_jhhbgh | Concentration of Prasinoxanthin | nanograms per liter (ng/L) |
Viola_HPLC_TP_CONC_BOTTLE_hdckeg | Concentration of Violaxanthin | nanograms per liter (ng/L) |
Zea_HPLC_TP_CONC_BOTTLE_rlwxro | Concentration of Zeaxanthin | nanograms per liter (ng/L) |
Dataset-specific Instrument Name | HPLC |
Generic Instrument Name | High-Performance Liquid Chromatograph |
Dataset-specific Description | Samples are analyzed on a Waters 2690 separations module equipped with a C18 column and full spectrum photodiode array detector. Samples are extracted and analyzed on a Waters 996 absorbance photodiode array detector in combination with a Waters 2475 fluorescence detector in September 2019 at OSU. |
Generic Instrument Description | A High-performance liquid chromatograph (HPLC) is a type of liquid chromatography used to separate compounds that are dissolved in solution. HPLC instruments consist of a reservoir of the mobile phase, a pump, an injector, a separation column, and a detector. Compounds are separated by high pressure pumping of the sample mixture onto a column packed with microspheres coated with the stationary phase. The different components in the mixture pass through the column at different rates due to differences in their partitioning behavior between the mobile liquid phase and the stationary phase. |
Website | |
Platform | R/V Roger Revelle |
Report | |
Start Date | 2018-09-18 |
End Date | 2018-10-21 |
Description | Additional cruise information is available from the Rolling Deck to Repository (R2R): https://www.rvdata.us/search/cruise/RR1814 |
A 60-day research cruise took place in 2018 along a transect form Alaska to Tahiti at 152° W. A description of the project titled "Collaborative Research: Management and implementation of the US GEOTRACES Pacific Meridional Transect", funded by NSF, is below. Further project information is available on the US GEOTRACES website and on the cruise blog. A detailed cruise report is also available as a PDF.
Description from NSF award abstract:
GEOTRACES is a global effort in the field of Chemical Oceanography in which the United States plays a major role. The goal of the GEOTRACES program is to understand the distributions of many elements and their isotopes in the ocean. Until quite recently, these elements could not be measured at a global scale. Understanding the distributions of these elements and isotopes will increase the understanding of processes that shape their distributions and also the processes that depend on these elements. For example, many "trace elements" (elements that are present in very low amounts) are also important for life, and their presence or absence can play a vital role in the population of marine ecosystems. This project will launch the next major U.S. GEOTRACES expedition in the Pacific Ocean between Alaska and Tahiti. The award made here would support all of the major infrastructure for this expedition, including the research vessel, the sampling equipment, and some of the core oceanographic measurements. This project will also support the personnel needed to lead the expedition and collect the samples.
This project would support the essential sampling operations and infrastructure for the U.S. GEOTRACES Pacific Meridional Transect along 152° W to support a large variety of individual science projects on trace element and isotope (TEI) biogeochemistry that will follow. Thus, the major objectives of this management proposal are: (1) plan and coordinate a 60 day research cruise in 2018; (2) obtain representative samples for a wide variety of TEIs using a conventional CTD/rosette, GEOTRACES Trace Element Sampling Systems, and in situ pumps; (3) acquire conventional CTD hydrographic data along with discrete samples for salinity, dissolved oxygen, algal pigments, and dissolved nutrients at micro- and nanomolar levels; (4) ensure that proper QA/QC protocols are followed and reported, as well as fulfilling all GEOTRACES intercalibration protocols; (5) prepare and deliver all hydrographic data to the GEOTRACES Data Assembly Centre (via the US BCO-DMO data center); and (6) coordinate all cruise communications between investigators, including preparation of a hydrographic report/publication. This project would also provide baseline measurements of TEIs in the Clarion-Clipperton fracture zone (~7.5°N-17°N, ~155°W-115°W) where large-scale deep sea mining is planned. Environmental impact assessments are underway in partnership with the mining industry, but the effect of mining activities on TEIs in the water column is one that could be uniquely assessed by the GEOTRACES community. In support of efforts to communicate the science to a wide audience the investigators will recruit an early career freelance science journalist with interests in marine science and oceanography to participate on the cruise and do public outreach, photography and/or videography, and social media from the ship, as well as to submit articles about the research to national media. The project would also support several graduate students.
GEOTRACES is a SCOR sponsored program; and funding for program infrastructure development is provided by the U.S. National Science Foundation.
GEOTRACES gained momentum following a special symposium, S02: Biogeochemical cycling of trace elements and isotopes in the ocean and applications to constrain contemporary marine processes (GEOSECS II), at a 2003 Goldschmidt meeting convened in Japan. The GEOSECS II acronym referred to the Geochemical Ocean Section Studies To determine full water column distributions of selected trace elements and isotopes, including their concentration, chemical speciation, and physical form, along a sufficient number of sections in each ocean basin to establish the principal relationships between these distributions and with more traditional hydrographic parameters;
* To evaluate the sources, sinks, and internal cycling of these species and thereby characterize more completely the physical, chemical and biological processes regulating their distributions, and the sensitivity of these processes to global change; and
* To understand the processes that control the concentrations of geochemical species used for proxies of the past environment, both in the water column and in the substrates that reflect the water column.
GEOTRACES will be global in scope, consisting of ocean sections complemented by regional process studies. Sections and process studies will combine fieldwork, laboratory experiments and modelling. Beyond realizing the scientific objectives identified above, a natural outcome of this work will be to build a community of marine scientists who understand the processes regulating trace element cycles sufficiently well to exploit this knowledge reliably in future interdisciplinary studies.
Expand "Projects" below for information about and data resulting from individual US GEOTRACES research projects.
Funding Source | Award |
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NSF Division of Ocean Sciences (NSF OCE) | |
NSF Division of Ocean Sciences (NSF OCE) | |
NSF Division of Ocean Sciences (NSF OCE) |