Dataset: Quantitative analysis of viral infection networks using previously published phytoplankton-virus networks newly compiled for results publication Edwards and Hayward (2024)

This dataset has not been validatedData not availableVersion 1 (2024-03-26)Dataset Type:Synthesis

Principal Investigator: Kyle F. Edwards (University of Hawaiʻi at Mānoa)

BCO-DMO Data Manager: Amber D. York (Woods Hole Oceanographic Institution)

Project: Giant viruses in the open ocean: Is large size adaptive where cells are scarce? (GVs NPSG)

Abstract

This dataset contains results of a quantitative analysis performed using previously published phytoplankton-virus networks newly compiled for results publication Edwards and Hayward (2024). Network dimensionality (in terms of the minimum embedding dimensionality) was analyzed using R code with input files containing 11 phytoplankton-virus cross-infection matrices collected from published sources.

Cite Dataset

Cross-infection matrices for viruses infecting eukaryotic phytoplankton were collected from published sources. 

The table provided in the "Data Files" section for this dataset corresponds to Table S1 of Edwards and Hayward (2024) and includes the results of a quantitative analysis of each viral infection network.  Citations for the eukaryote-virus networks are listed in the column "Reference" with full citations listed in the "Related Datasets" section. The bacteria-virus networks were taken from a previous compilation: Flores et al. (2011).

Related Datasets

No Related Datasets

Related Publications

Results
Edwards, K. F., & Hayward, C. (2024). The dimensionality of infection networks among viruses infecting microbial eukaryotes and bacteria. Ecology Letters, 27(2). Portico. https://doi.org/10.1111/ele.14383
IsDerivedFrom
Baudoux, A. ‐C., Lebredonchel, H., Dehmer, H., Latimier, M., Edern, R., Rigaut‐Jalabert, F., Ge, P., Guillou, L., Foulon, E., Bozec, Y., Cariou, T., Desdevises, Y., Derelle, E., Grimsley, N., Moreau, H., & Simon, N. (2015). Interplay between the genetic clades of <scp>M</scp>icromonas and their viruses in the <scp>W</scp>estern <scp>E</scp>nglish <scp>C</scp>hannel. Environmental Microbiology Reports, 7(5), 765–773. Portico. https://doi.org/10.1111/1758-2229.12309
IsDerivedFrom
Baudoux, A.-C., & Brussaard, C. P. D. (2005). Characterization of different viruses infecting the marine harmful algal bloom species Phaeocystis globosa. Virology, 341(1), 80–90. https://doi.org/10.1016/j.virol.2005.07.002
IsDerivedFrom
Bellec, L., Clerissi, C., Edern, R., Foulon, E., Simon, N., Grimsley, N., & Desdevises, Y. (2014). Cophylogenetic interactions between marine viruses and eukaryotic picophytoplankton. BMC Evolutionary Biology, 14(1). https://doi.org/10.1186/1471-2148-14-59
IsDerivedFrom
Clerissi, C., Desdevises, Y., & Grimsley, N. (2012). Prasinoviruses of the Marine Green Alga Ostreococcus tauri Are Mainly Species Specific. Journal of Virology, 86(8), 4611–4619. https://doi.org/10.1128/jvi.07221-11

Edwards, K. F. (2024) Quantitative analysis of viral infection networks using previously published phytoplankton-virus networks newly compiled for results publication Edwards and Hayward (2024). Biological and Chemical Oceanography Data Management Office (BCO-DMO). (Version 1) Version Date 2024-03-26 [if applicable, indicate subset used]. http://lod.bco-dmo.org/id/dataset/923515 [access date]

Terms of Use

This dataset is licensed under Creative Commons Attribution 4.0.


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Funded by the U.S. National Science Foundation